View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4968_high_2 (Length: 569)

Name: NF4968_high_2
Description: NF4968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4968_high_2
NF4968_high_2
[»] chr8 (2 HSPs)
chr8 (147-327)||(27106528-27106707)
chr8 (34-106)||(27106447-27106519)
[»] chr1 (6 HSPs)
chr1 (34-106)||(962790-962862)
chr1 (34-104)||(944320-944388)
chr1 (152-306)||(962876-963028)
chr1 (147-263)||(944399-944513)
chr1 (272-327)||(963022-963077)
chr1 (467-540)||(944599-944672)
[»] chr6 (1 HSPs)
chr6 (163-245)||(14290104-14290186)


Alignment Details
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 147 - 327
Target Start/End: Original strand, 27106528 - 27106707
Alignment:
Q  147 gcatgagacttgaaaattgagatttgatagagaaacaattagagctttccatgatagacatgggagattacagatgaaagttgagggtgacacttgaaaa 246  Q
    |||| |||||||||||||||||| ||| ||||||| |||| | | ||||||||||| |||||  |  ||| ||||||||||||| |||||||||||| ||    
T  27106528 gcataagacttgaaaattgagatctgagagagaaa-aattgggg-tttccatgataaacatgaaaatttatagatgaaagttgacggtgacacttgagaa 27106625  T
Q  247 attgtttggttatgtgtttg-tattctgaaatgttggaaattttgggtgagttgtgaaattgtgggtagatctcttaaaaaa 327  Q
    ||||| ||  |  ||||    | || |||||| ||| ||||||| ||||||||||||||||||||||||||||||| |||||    
T  27106626 attgtatgtatcagtgtcacatgttgtgaaattttgaaaattttaggtgagttgtgaaattgtgggtagatctcttcaaaaa 27106707  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 27106447 - 27106519
Alignment:
Q  34 tcttctaactcagatcacatcctccactccaagttggtaatataaatctctctcccttctatgttggtgttgt 106  Q
    |||||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||| |||| || |||||||    
T  27106447 tcttctaattcatatcgcatcctccagtccaagttggtaatataaatctctctccctcctatattcgtgttgt 27106519  T

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Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 962790 - 962862
Alignment:
Q  34 tcttctaactcagatcacatcctccactccaagttggtaatataaatctctctcccttctatgttggtgttgt 106  Q
    |||||||||||||||| || ||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||    
T  962790 tcttctaactcagatcgcaacctccacaccatgttggtaatataaatctatctccctcctatgttggtgttgt 962862  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 944320 - 944388
Alignment:
Q  34 tcttctaactcagatcacatcctccactccaagttggtaatataaatctctctcccttctatgttggtgtt 104  Q
    ||||||||||||||||  |||||||||||||||||||| |||||||  ||||||||| |||||||||||||    
T  944320 tcttctaactcagatcgtatcctccactccaagttggttatataaa--tctctccctcctatgttggtgtt 944388  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 152 - 306
Target Start/End: Original strand, 962876 - 963028
Alignment:
Q  152 agacttgaaaattgagatttgatagagaaacaattagagctttccatgatagacatgggagattacagatgaaagttgagggtgacacttgaaaaattgt 251  Q
    |||||||||||||||||||||| |||||||  ||| | | ||| ||||||||| |||  | ||||   ||||||||||| | | ||| |||| |||||||    
T  962876 agacttgaaaattgagatttgagagagaaa--atttggggttttcatgatagaaatgacaaattattaatgaaagttgacgataacaattgagaaattgt 962973  T
Q  252 ttggttatgtgtttgtattctgaaatgttggaaattttgggtgagttgtgaaatt 306  Q
    |||||| ||| | ||  || |||||| |||||||||||| |||||||||||||||    
T  962974 ttggttctgtttatgagttgtgaaattttggaaattttgagtgagttgtgaaatt 963028  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 263
Target Start/End: Original strand, 944399 - 944513
Alignment:
Q  147 gcatgagacttgaaaattgagatttgatagagaaacaattagagctttccatgatagacatgggagattacagatgaaagttgagggtgacacttgaaaa 246  Q
    |||| |||||||||| ||| ||||||| |||||||  ||| | |  ||||||||||||||||  | |||| | ||||||||||| ||||||| ||||  |    
T  944399 gcataagacttgaaatttgggatttgagagagaaa--atttggggcttccatgatagacatgacaaattatatatgaaagttgacggtgacaattgagga 944496  T
Q  247 attgtttggttatgtgt 263  Q
    |||||||||||||||||    
T  944497 attgtttggttatgtgt 944513  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 963022 - 963077
Alignment:
Q  272 tgaaatgttggaaattttgggtgagttgtgaaattgtgggtagatctcttaaaaaa 327  Q
    |||||| |||||||||||| | |||||||||||||||||| ||||||||| |||||    
T  963022 tgaaattttggaaattttgagagagttgtgaaattgtgggcagatctcttcaaaaa 963077  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 540
Target Start/End: Original strand, 944599 - 944672
Alignment:
Q  467 caacatctgtgacagctgaaatcgtaaaaatcttaaggcaaccgtgactgtgaccgttatttaaaaccttgatc 540  Q
    |||||||||||||||| | |||||  |||||||||| |  | |||||  | |||||||||||||||||||||||    
T  944599 caacatctgtgacagccggaatcgcgaaaatcttaacgtgaacgtgatcgcgaccgttatttaaaaccttgatc 944672  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 245
Target Start/End: Complemental strand, 14290186 - 14290104
Alignment:
Q  163 ttgagatttgatagagaaacaattagagctttccatgatagacatgggagattacagatgaaagttgagggtgacacttgaaa 245  Q
    ||||||||||| ||||||| |||| || ||||||||| |||||||  ||||||| ||||||||||||||||||||| ||||||    
T  14290186 ttgagatttgagagagaaaaaattggaactttccatgttagacattagagattatagatgaaagttgagggtgacaattgaaa 14290104  T

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