View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4968_high_5 (Length: 469)
Name: NF4968_high_5
Description: NF4968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4968_high_5 |
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| [»] scaffold0524 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 67 - 454
Target Start/End: Complemental strand, 9801667 - 9801282
Alignment:
| Q |
67 |
gtaaaagagaaaacacttaaatgatgtgactaaatttatctcatttacatgtatgtacctaagtatttttcatttgtaattgtgtttaaataaaacttgc |
166 |
Q |
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| T |
9801667 |
gtaaaagagaaaacact-aaatgatgtgactaaatttatctcatttacatgcatgtacctaagtatttttcatttgtaattgtgtttaaataaaacttgc |
9801569 |
T |
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| Q |
167 |
gtaattcggtttctaagaagattattatggaaggaaaaacatgtgtactcaagaaattcttaatacttaccaatctgcttctgattaacttatcaatttg |
266 |
Q |
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| T |
9801568 |
gtaattcggtttctaagaagattattagggaaggaaaaacatgtgtattcaagaagtttttgatatttaccaatctgcttctgattaacttattaatttg |
9801469 |
T |
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| Q |
267 |
gataaatataaaatctcttttgaccgaaatgtacttgatgatagtcaaatcttgttccaaggttggatgcaaattaaagttgttgggtgtaattaaaaag |
366 |
Q |
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| T |
9801468 |
gataaatatgaaatcacttttgaccgaaatgtacttgatgatagtcaaatcttgttccaaggttggatgcaaattaaagttgttgcgtgtaatt-aaaag |
9801370 |
T |
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| Q |
367 |
tatttgggggcttcctgcttttgttgatagacctaagcaataggttttcaattttgtccaagataaagtgtggaagaagctgaaaggt |
454 |
Q |
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| T |
9801369 |
tatttgggggcttcctgcttttgttggcagacctaagcaataagttttcaattttgtccaagatagagtgtggaagaagctgaaaggt |
9801282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 222 - 350
Target Start/End: Complemental strand, 3349353 - 3349225
Alignment:
| Q |
222 |
attcttaatacttaccaatctgcttctgattaacttatcaatttggataaatataaaatctcttttgaccgaaatgtacttgatgatagtcaaatcttgt |
321 |
Q |
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| T |
3349353 |
attcttaatacttaccaatatgcttttggtcaacttattaatttggataaatttgaaatctcttttagccaaaaggtacatgatgatcgtaaaatcatgt |
3349254 |
T |
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| Q |
322 |
tccaaggttggatgcaaattaaagttgtt |
350 |
Q |
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| T |
3349253 |
tccaaagttggatgcaaattaaagttgtt |
3349225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 380 - 454
Target Start/End: Original strand, 7102350 - 7102424
Alignment:
| Q |
380 |
cctgcttttgttgatagacctaagcaataggttttcaattttgtccaagataaagtgtggaagaagctgaaaggt |
454 |
Q |
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| T |
7102350 |
cctgctttttttggtagatctaagaaacaggttttcaattttgtccaagatagggtgtggaagaagctgaaaggt |
7102424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 409 - 450
Target Start/End: Complemental strand, 3349170 - 3349129
Alignment:
| Q |
409 |
ggttttcaattttgtccaagataaagtgtggaagaagctgaa |
450 |
Q |
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| T |
3349170 |
ggttttcaattttgtccaagatagggtgtggaagaagctgaa |
3349129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 9806679 - 9806642
Alignment:
| Q |
76 |
aaaacacttaaatgatgtgactaaatttatctcattta |
113 |
Q |
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| T |
9806679 |
aaaacacttaaataatgtgactaaatttatctcattta |
9806642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 215 - 343
Target Start/End: Complemental strand, 14071196 - 14071068
Alignment:
| Q |
215 |
tcaagaaattcttaatacttaccaatctgcttctgattaacttatcaatttggataaatataaaatctcttttgaccgaaatgtacttgatgatagtcaa |
314 |
Q |
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| T |
14071196 |
tcaagaaattcttaatacttaccaatctgcttctggacaacttattaatttggataaatttgaaatctcttttagccgaaaggtacctgatgatcgtaaa |
14071097 |
T |
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| Q |
315 |
atcttgttccaaggttggatgcaaattaa |
343 |
Q |
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| T |
14071096 |
atcttcttccaaggttggatgcaaattaa |
14071068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 215 - 343
Target Start/End: Complemental strand, 14381224 - 14381096
Alignment:
| Q |
215 |
tcaagaaattcttaatacttaccaatctgcttctgattaacttatcaatttggataaatataaaatctcttttgaccgaaatgtacttgatgatagtcaa |
314 |
Q |
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| T |
14381224 |
tcaagaaattcttaatacttaccaatctgcttctggacaacttattaatttggataaatttgaaatctcttttagccgaaaggtacctgatgatcgtaaa |
14381125 |
T |
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| Q |
315 |
atcttgttccaaggttggatgcaaattaa |
343 |
Q |
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| T |
14381124 |
atcttcttccaaggttggatgcaaattaa |
14381096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 215 - 454
Target Start/End: Complemental strand, 11793753 - 11793516
Alignment:
| Q |
215 |
tcaagaaattcttaatacttaccaatctgcttctgattaacttatcaatttggataaatataaaatctcttttgaccgaaatgtacttgatgatagtcaa |
314 |
Q |
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| T |
11793753 |
tcaagaaactcttaatacttaccaatcttctttcggtcaacttattaattttgacaaatcagaaatctgttttagccgaaatgtacctgatgatcgtaaa |
11793654 |
T |
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| Q |
315 |
atcttgttccaaggttggatgcaaattaaagttgttgggtgtaattaaaaagtatttgggggcttcctgcttttgttgatagacctaagcaataggtttt |
414 |
Q |
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| T |
11793653 |
atcttgttgcaaggttggatacaaatcaaggctgttaagtgtcatt-taaagtattt-ggggctacctgcttttgttggtaggtctaagaaacatgtatt |
11793556 |
T |
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| Q |
415 |
caattttgtccaagataaagtgtggaagaagctgaaaggt |
454 |
Q |
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| T |
11793555 |
caattttgtccaagatagggtgtggaagaagctgaaaggt |
11793516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0524 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0524
Description:
Target: scaffold0524; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 290 - 454
Target Start/End: Complemental strand, 11597 - 11435
Alignment:
| Q |
290 |
ccgaaatgtacttgatgatagtcaaatcttgttccaaggttggatgcaaattaaagttgttgggtgtaattaaaaagtatttgggggcttcctgcttttg |
389 |
Q |
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| T |
11597 |
ccgaaatgtacctgatgatcgtaaaatcttgttccaaggttggatgcaaattaaggttgttgagtgtcatt-taaagtatct-gggactgcctgcttttg |
11500 |
T |
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| Q |
390 |
ttgatagacctaagcaataggttttcaattttgtccaagataaagtgtggaagaagctgaaaggt |
454 |
Q |
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||| ||| |||| || ||||||| |||||||||||||||| ||| |||||||||||||||| |
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| T |
11499 |
ttggtaggtctaataaacaggttttaaattttgtccaagatagggtgcagaagaagctgaaaggt |
11435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 343
Target Start/End: Complemental strand, 25190688 - 25190598
Alignment:
| Q |
253 |
aacttatcaatttggataaatataaaatctcttttgaccgaaatgtacttgatgatagtcaaatcttgttccaaggttggatgcaaattaa |
343 |
Q |
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||||||||||||||||||||| ||||||| || ||||||||||| | ||||| || |||| |||||||||| ||||||| ||||||| |
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| T |
25190688 |
aacttatcaatttggataaattagaaatctccttcagccgaaatgtacctaatgattgtaaaattttgttccaagattggatgaaaattaa |
25190598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 39607650 - 39607708
Alignment:
| Q |
292 |
gaaatgtacttgatgatagtcaaatcttgttccaaggttggatgcaaattaaagttgtt |
350 |
Q |
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| T |
39607650 |
gaaatgtatctgacgattgtaaaatgttgttccaaggttggatgcaaattaaggttgtt |
39607708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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