View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4968_high_7 (Length: 385)
Name: NF4968_high_7
Description: NF4968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4968_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 10 - 363
Target Start/End: Original strand, 24358479 - 24358831
Alignment:
| Q |
10 |
tagattattcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
24358479 |
tagattattcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggacgaatggcttaattggaa |
24358578 |
T |
|
| Q |
110 |
gaaggctaaacaaagatcaccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttcttttcagtgtgcatatatat |
208 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
24358579 |
gaaggctaaacaaagatcacctttcgtttctcctcgaccacataaaaaagttcgaggtttggtttggtttcttgattttcttttcagtgt--acatatat |
24358676 |
T |
|
| Q |
209 |
aatacataatggattgatgctcttcaagagtttcttcgatgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24358677 |
aatacataatggattgatgctcttcaagagtttcttctttgatttacattgcacgcatatatgcaggtgatgatgagaagactactaaaagaacttcatc |
24358776 |
T |
|
| Q |
309 |
aatcaattggccaaaggatgttagagctcaggaagttgctcaaaatttcatctca |
363 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
24358777 |
aataaattggccaaaggatgttagagctcagaaagtagctcaaaatttcatctca |
24358831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 24369844 - 24370020
Alignment:
| Q |
19 |
cttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggctaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24369844 |
cttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggatgaatggcttaatcggaagaaggctag |
24369943 |
T |
|
| Q |
119 |
acaaagatcaccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttcttttca |
194 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
24369944 |
acaaagatcaccttttgtttcttctcgaccacataagaaagttcaaggtttggtttggtttcttgattttcttttca |
24370020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 24364806 - 24364625
Alignment:
| Q |
16 |
attcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggc |
115 |
Q |
| |
|
|||||||| |||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24364806 |
attcttcaagtgacactaatgatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggatgaatggcttaatcggaagaaggc |
24364707 |
T |
|
| Q |
116 |
taaacaaagatcaccttttgtttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttcttttcagt |
196 |
Q |
| |
|
|| |||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24364706 |
tagacaaagatcaccttttatttctactcgaccacataagaaagttcgaggtttggtttggtttcttgattttcttttcagt |
24364625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 231 - 367
Target Start/End: Original strand, 24370017 - 24370153
Alignment:
| Q |
231 |
ttcaagagtttcttcgatgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaatcaattggccaaaggatgtt |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24370017 |
ttcaagagtttcttcgatgttttacatttcacacatatatgcaggtgatgatgagaagactactaaaagaacttcatcaatgaattggccaaaggatgtt |
24370116 |
T |
|
| Q |
331 |
agagctcaggaagttgctcaaaatttcatctcatgca |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24370117 |
agagctcaggaagttgctcaaaatttcatctcatgca |
24370153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 252 - 367
Target Start/End: Complemental strand, 24364541 - 24364426
Alignment:
| Q |
252 |
ttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaatcaattggccaaaggatgttagagctcaggaagttgctcaa |
351 |
Q |
| |
|
||||||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||||| || ||||| ||| ||| ||||||||||||||| |||||| |
|
|
| T |
24364541 |
ttacattgcacacatatatgcaggagatcatgagaagactactaaaagaacttcatcaataaactggccgaagaatgctagagctcaggaagtagctcaa |
24364442 |
T |
|
| Q |
352 |
aatttcatctcatgca |
367 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
24364441 |
aatttcatctcatgca |
24364426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 52 - 167
Target Start/End: Original strand, 24354862 - 24354974
Alignment:
| Q |
52 |
ttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggctaaacaaagatcaccttttgtttctcctcgaccaca |
151 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| ||||||||||||| |||||| |||| ||||||||||||||| |||||||||||||| || |
|
|
| T |
24354862 |
ttgatcatagtgatgatgag---tctgttgagattttggaagaatggcttaatcagaagaatgctagacaaagatcacctttcgtttctcctcgacctca |
24354958 |
T |
|
| Q |
152 |
taagaaagttcgaggt |
167 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
24354959 |
taagaaagttagaggt |
24354974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 24344557 - 24344634
Alignment:
| Q |
19 |
cttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggc |
99 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
24344557 |
cttcatgtgacactgatgatgaaaatgacaatgttggtcatagtgatgatg---aatcagttgagattttagatgaatggc |
24344634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 367
Target Start/End: Original strand, 24355617 - 24355731
Alignment:
| Q |
248 |
tgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaatcaattggccaa-aggatgttagagctcaggaagttg |
346 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| | |||| ||| ||||||||||||||||| |||||||| |||| | ||||||||||||||| | |
|
|
| T |
24355617 |
tgttttatattccacacatatatgcaggtgagattaagaaaactgctaaaagaacttcatca-----ttggccaagagga-gctagagctcaggaagtag |
24355710 |
T |
|
| Q |
347 |
ctcaaaatttcatctcatgca |
367 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
24355711 |
ctcaaaatttcatctcatgca |
24355731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 24351741 - 24351880
Alignment:
| Q |
16 |
attcttcatgtgacagtgatgatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggc |
115 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||| ||| | |||| ||| ||||| ||||||||| |||||||||| |||| ||||| || |
|
|
| T |
24351741 |
attcttcatgtgacactgatgatgaaaatggaaatgttggtcaaa---atgacgatgaatcacttgagatttcagatgaatggcgaaatcagaagattgc |
24351837 |
T |
|
| Q |
116 |
taaacaaagatcaccttttgtttctcctcgaccacataagaaa |
158 |
Q |
| |
|
|| | |||| |||| || ||| ||||||||||||||||||| |
|
|
| T |
24351838 |
tagaaaaaggccaccattattttatcctcgaccacataagaaa |
24351880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 320
Target Start/End: Original strand, 24362479 - 24362551
Alignment:
| Q |
248 |
tgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaatcaattggcc |
320 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | |||||||| || |||||||| ||||| | |||||||| |
|
|
| T |
24362479 |
tgttttatatttcacacatatatgcaggtgagattaagaagactactgaaagaactacatcattgaattggcc |
24362551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University