View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4968_high_8 (Length: 374)
Name: NF4968_high_8
Description: NF4968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4968_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 38750330 - 38750683
Alignment:
| Q |
1 |
gtgatagatgtgatatgttagtggtgtaatggaaagagagagagataaagagaaaatgagttcttggatgagtgtatgaaaattaaaggtgtacatatat |
100 |
Q |
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| T |
38750330 |
gtgatagatgtgatatgttagtggtgtaatgga--gagagagagataaagagaaaatgagttcttggatgagtgtatgaaaattaaaggtgtacatatat |
38750427 |
T |
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| Q |
101 |
tgttgattaatcaattgtagtgtttcacaaatacatatttgcaaatggatcctctcgtgtgattttcaaatgagagagtaaacaaatcattttataagga |
200 |
Q |
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| T |
38750428 |
tgttgattaatcaattgtagtgtttggcaaatgtatatttgcaaatggatcctctcgtatgattttcaaatgagagagtaaacaaatca-tttataagga |
38750526 |
T |
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| Q |
201 |
gtgtcaaacactacctttaaagtatgattgtggtcgttgttgttgttgtgatacgcatttgtgacgtaaaataattttaaattttcacaaattatatgac |
300 |
Q |
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| T |
38750527 |
gtgtcaaacactacctttaaagtatgattgtggtcgtcgtcgttgttgtgatatgcatttgtgacgtaaaataattttaaattttcacaaattatatgat |
38750626 |
T |
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| Q |
301 |
accaccgtgccaacttactatttaccatagtagagtatcagtttgctccgtcaatact |
358 |
Q |
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| T |
38750627 |
a-caccgtgccaacttactatttaccatagtagagtatcagtttgctccgtcaatact |
38750683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 41851800 - 41851749
Alignment:
| Q |
42 |
gagataaagagaaaatgagttcttggatgagtgtatgaaaattaaaggtgta |
93 |
Q |
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| T |
41851800 |
gagataaagagaaaatgaggtgttgaatgagtgtatgaaaattaagggtgta |
41851749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 7573671 - 7573580
Alignment:
| Q |
2 |
tgatagatgtgatatgttagtggtgtaatggaaagagagagagataaagagaaaatgagttcttggatgagtgtatgaaaattaaaggtgtaca |
95 |
Q |
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| T |
7573671 |
tgatagatgtgatatgttagtgatgtgatggga--agaaagagatacaaagaaaatgaggtggttaatgggtgtatgaaaattgaaggtgtaca |
7573580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 10502870 - 10502961
Alignment:
| Q |
8 |
atgtgatatgttagtggtgtaatggaaagagagagagataaagagaaaatgagttcttggatgagtgtatgaaaattaaaggtgtacatatat |
100 |
Q |
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| T |
10502870 |
atgtgatatgttagtgatgtgatagaaaaa-agaaatatagagagaaaattagacgttgaatgagtgtatgtaaattaaaggtgtacaaatat |
10502961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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