View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4968_high_9 (Length: 338)
Name: NF4968_high_9
Description: NF4968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4968_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 39231814 - 39232101
Alignment:
| Q |
1 |
tcatcatctattttactctccatttatgttttgtttgtttcttggtttgcagattgtaaaaattaacaattctttttgtttttcattcgacggcaatgaa |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
39231814 |
tcatcatccattttactctccatttatgttttgtttgtttcttggtttgcagattgtaaaaattaataattctttttgtttttcattcgaaggcaatgaa |
39231913 |
T |
|
| Q |
101 |
gattgtagtttgttgaatgaatgaatacaacctttcaaatttcaattgactatgttttgttttccaagttaagaaattaatttcacaatataaaaagtta |
200 |
Q |
| |
|
|||||| |||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39231914 |
aattgtaatttgttcaatgaatgaattcaacctttcaaatttcaattgactgtgttttgttttccaagttaagaaattaatttcacaatataaaaagtta |
39232013 |
T |
|
| Q |
201 |
aaaatta-atttttctcagtaaatattattcgctttgtgaaatcgtgcccttaacggagaacacattttagcatgaccattaaaaaat |
287 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39232014 |
aaaattatttttttctcagtaaatattattcgctttgtgaaatcgtgcccttaacggagaacacattttagcatgaccattaaaaaat |
39232101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 323
Target Start/End: Original strand, 39232856 - 39232901
Alignment:
| Q |
279 |
ttaaaaaatcgcatcaagtccaccaccacaact-aatgcaacaact |
323 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
39232856 |
ttaaaaaatagcatcaaatccaccaccacaactaaatgcaacaact |
39232901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University