View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4968_low_16 (Length: 315)
Name: NF4968_low_16
Description: NF4968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4968_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 35 - 298
Target Start/End: Complemental strand, 33217150 - 33216878
Alignment:
| Q |
35 |
catttgtaagactgtttggaagaatttatnnnnnnnncaacttataaaagattcatatgatattttcatcttattgataaccgcctatggagcttattta |
134 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33217150 |
catttgtaagactgtttggaagaatttataaaaaaaacaacttataacagattcatgtgatattttcatcttattgataaccgcttatggagcttattta |
33217051 |
T |
|
| Q |
135 |
catatgctttccagaatagcttgtgaaaataac---------atataaaagcatatttattttcttttatctttggtattgaaataacttctacataagg |
225 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33217050 |
catatgctttccagaatagcttgtgaacataacgtgtaacttatataaaagcatatttattttcttttatctttggtattgaaataacttctacataagg |
33216951 |
T |
|
| Q |
226 |
acttatatgataattgcttatactatatccaaacaaagcctaaaagtttaacacaaaattttcatttctctca |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33216950 |
acttatatgataattgcttatactatatccaaacaaagcctaaaagtttaacacacaattttcatttctctca |
33216878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 31668790 - 31668845
Alignment:
| Q |
197 |
tttggtattgaaataacttctacataaggacttatatgataattgcttatactata |
252 |
Q |
| |
|
|||| ||| |||||| ||| |||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
31668790 |
tttgttatagaaatagcttatacataagcacttatatgataattgcttatgctata |
31668845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 252
Target Start/End: Original strand, 3217305 - 3217350
Alignment:
| Q |
207 |
aaataacttctacataaggacttatatgataattgcttatactata |
252 |
Q |
| |
|
||||| ||| |||||||| |||||||||||||| |||||||||||| |
|
|
| T |
3217305 |
aaatagcttatacataagcacttatatgataatcgcttatactata |
3217350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 32171600 - 32171560
Alignment:
| Q |
13 |
tgaacttatttacagacataagcatttgtaagactgtttgg |
53 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||| |||| |
|
|
| T |
32171600 |
tgaacttatttactgacataagcatttgtgagactggttgg |
32171560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 12972816 - 12972766
Alignment:
| Q |
202 |
tattgaaataacttctacataaggacttatatgataattgcttatactata |
252 |
Q |
| |
|
|||||||||| ||| |||||||| ||||||||||||| ||||||| ||||| |
|
|
| T |
12972816 |
tattgaaatagcttatacataagcacttatatgataaatgcttatgctata |
12972766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 2400126 - 2400072
Alignment:
| Q |
192 |
ttatctttggtattgaaataacttctacataaggacttatatgataattgcttat |
246 |
Q |
| |
|
||||||||| ||| |||| ||||| |||||||| |||||||||||||||| |||| |
|
|
| T |
2400126 |
ttatctttgttatagaaacaacttatacataagcacttatatgataattgtttat |
2400072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 34927092 - 34927046
Alignment:
| Q |
17 |
cttatttacagacataagcatttgtaagactgtttggaagaatttat |
63 |
Q |
| |
|
||||||||| |||||||||| || |||||||||||||||||| |||| |
|
|
| T |
34927092 |
cttatttactgacataagcacttataagactgtttggaagaacttat |
34927046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 35809911 - 35809857
Alignment:
| Q |
184 |
attttcttttatctttggtattgaaataacttctacataaggacttatatgataa |
238 |
Q |
| |
|
||||| ||||||||||| || |||||||||| |||||||| ||||||||||||| |
|
|
| T |
35809911 |
attttattttatctttgtcatggaaataacttatacataagcacttatatgataa |
35809857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 5924146 - 5924108
Alignment:
| Q |
13 |
tgaacttatttacagacataagcatttgtaagactgttt |
51 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
5924146 |
tgaacttatttactgacatacgcatttgtaagactgttt |
5924108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University