View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4968_low_17 (Length: 299)
Name: NF4968_low_17
Description: NF4968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4968_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 2 - 296
Target Start/End: Original strand, 56199544 - 56199851
Alignment:
| Q |
2 |
catcatacggagggcaatcccaaaatcgcaattgcaattttcaaacatgtcccagaatagtattactctctctcnnnnnnnctgatgaaaggaaaaggaa |
101 |
Q |
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| T |
56199544 |
catcatacggagggcaatcccaaaatcgcaattgcaattttcaaacatgtcccagaataatattactctctctctttttttctgatgaaaggaaaaggaa |
56199643 |
T |
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| Q |
102 |
ggttggttaatatattaataaacaaataaatcctccctcattttcattcattcaatcaaaatcaatctctatagatcca----------------attac |
185 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
56199644 |
ggttggttaata---taataaacaaataaatcctccctcattttaattcattcaatcaaaatcaatctctatagatccaattttaaatcctgatcattac |
56199740 |
T |
|
| Q |
186 |
tatattttcaattccaattcttcttcaattattactgcattgtacctggacgtatacatttgctttttggtgaattcttcttaattccatggtaaagtag |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
56199741 |
tatattttcaattccaattcttcttcaattattactgcattgtacctggacgtatacatttgctttttggtgaattcttcttaattacatggtaaagtag |
56199840 |
T |
|
| Q |
286 |
tagtaataata |
296 |
Q |
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|| |||||||| |
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| T |
56199841 |
taataataata |
56199851 |
T |
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