View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4968_low_19 (Length: 279)
Name: NF4968_low_19
Description: NF4968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4968_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 11 - 164
Target Start/End: Complemental strand, 6653221 - 6653068
Alignment:
| Q |
11 |
cacagaaccagaaatctgattgatatacacttcccctatcaatttccacagaaacccattattttctactcaaaaatattaaaactttagcatcacatca |
110 |
Q |
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| T |
6653221 |
cacagaaccagaaatctgattgatatacacttcccctatcaatttccacagaaacccattattttatactcaaaaatattaaaactttatcatcacatca |
6653122 |
T |
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| Q |
111 |
cacaattaacatgcatacaagaaaattaccttatagtgaagtacagtgaggtgc |
164 |
Q |
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| T |
6653121 |
cacaattaacatgcatacaagaaaattagcttatagtgaagtacagtgaggtgc |
6653068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 6653404 - 6653324
Alignment:
| Q |
13 |
cagaaccagaaatctgattgatatacacttcccctatcaatttccacagaaacccattattttctactcaaaaatattaaa |
93 |
Q |
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| T |
6653404 |
cagaaccagaaatctgattcatatacacttcccccatcaatttccacacaaacccatttttttctaataaaaaagattaaa |
6653324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 6653012 - 6652970
Alignment:
| Q |
220 |
tttggtgaagcggaagttgaagggtcgatgaaggagggaaggg |
262 |
Q |
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| T |
6653012 |
tttggtgaagcggaagttgaagggtcgatgaaggagggaaggg |
6652970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 6653579 - 6653507
Alignment:
| Q |
22 |
aaatctgattgatatacacttcccctatcaatttccacagaaacccattatttt-ctactcaaaaatattaaa |
93 |
Q |
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|||||||||| |||||| |||| |||||||||||| | | ||||||||| |||| ||||||||||| |||||| |
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| T |
6653579 |
aaatctgattcatatactcttctcctatcaatttctagacaaacccatttttttactactcaaaaagattaaa |
6653507 |
T |
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