View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4968_low_23 (Length: 226)

Name: NF4968_low_23
Description: NF4968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4968_low_23
NF4968_low_23
[»] chr4 (18 HSPs)
chr4 (6-226)||(56200006-56200226)
chr4 (6-79)||(1777023-1777092)
chr4 (6-79)||(31959820-31959889)
chr4 (6-79)||(45209211-45209280)
chr4 (6-79)||(52569521-52569590)
chr4 (6-48)||(27983427-27983469)
chr4 (6-77)||(37042670-37042737)
chr4 (7-77)||(27450187-27450253)
chr4 (6-79)||(436436-436505)
chr4 (6-79)||(6957805-6957874)
chr4 (6-79)||(19061941-19062010)
chr4 (6-79)||(23906303-23906372)
chr4 (6-79)||(29209181-29209250)
chr4 (47-79)||(32339766-32339798)
chr4 (47-79)||(40018232-40018264)
chr4 (6-79)||(48174099-48174168)
chr4 (6-79)||(48622549-48622618)
chr4 (6-79)||(49738556-49738625)
[»] chr7 (14 HSPs)
chr7 (6-79)||(36869243-36869319)
chr7 (6-79)||(6375075-6375144)
chr7 (47-79)||(6807411-6807443)
chr7 (6-79)||(11594167-11594236)
chr7 (6-79)||(12841281-12841350)
chr7 (6-79)||(28208334-28208403)
chr7 (6-79)||(31682608-31682677)
chr7 (6-79)||(34869627-34869696)
chr7 (6-79)||(39906378-39906447)
chr7 (7-79)||(35906208-35906276)
chr7 (6-79)||(21078124-21078193)
chr7 (6-79)||(37618152-37618221)
chr7 (6-79)||(40979934-40980003)
chr7 (6-79)||(45836488-45836557)
[»] chr5 (13 HSPs)
chr5 (6-79)||(28186788-28186857)
chr5 (99-169)||(42160832-42160902)
chr5 (6-79)||(20456980-20457049)
chr5 (6-79)||(29816589-29816658)
chr5 (6-79)||(30213782-30213851)
chr5 (7-79)||(38685174-38685242)
chr5 (8-79)||(2915504-2915571)
chr5 (6-79)||(4496591-4496660)
chr5 (6-79)||(10639509-10639578)
chr5 (6-79)||(11675737-11675806)
chr5 (6-79)||(12492390-12492459)
chr5 (6-79)||(28976865-28976934)
chr5 (6-79)||(38132543-38132612)
[»] chr1 (22 HSPs)
chr1 (5-76)||(38877348-38877415)
chr1 (6-79)||(34792355-34792424)
chr1 (6-79)||(1210952-1211021)
chr1 (6-79)||(9592941-9593010)
chr1 (6-79)||(25979237-25979306)
chr1 (6-79)||(29577459-29577528)
chr1 (6-79)||(30202136-30202205)
chr1 (47-79)||(38869089-38869121)
chr1 (6-79)||(41560436-41560505)
chr1 (6-79)||(49347399-49347468)
chr1 (6-79)||(853787-853860)
chr1 (5-79)||(49377508-49377578)
chr1 (47-79)||(109036-109068)
chr1 (6-79)||(8796416-8796485)
chr1 (47-79)||(16943362-16943394)
chr1 (6-79)||(22090303-22090372)
chr1 (6-79)||(28090700-28090769)
chr1 (6-75)||(37462882-37462947)
chr1 (6-79)||(44751691-44751760)
chr1 (6-79)||(44941782-44941851)
chr1 (6-79)||(51602263-51602332)
chr1 (6-79)||(52921287-52921356)
[»] chr3 (10 HSPs)
chr3 (6-79)||(7895886-7895955)
chr3 (6-79)||(48532164-48532234)
chr3 (6-79)||(12096711-12096780)
chr3 (99-166)||(24091586-24091653)
chr3 (6-77)||(5169041-5169108)
chr3 (47-79)||(2340760-2340792)
chr3 (47-79)||(46367430-46367462)
chr3 (6-79)||(47555338-47555407)
chr3 (6-79)||(48508442-48508511)
chr3 (47-79)||(55244485-55244517)
[»] chr2 (18 HSPs)
chr2 (6-77)||(39029790-39029863)
chr2 (6-79)||(227396-227465)
chr2 (6-79)||(12474933-12475002)
chr2 (6-79)||(28508885-28508954)
chr2 (6-79)||(30306239-30306308)
chr2 (6-79)||(33504431-33504500)
chr2 (6-77)||(3635329-3635396)
chr2 (6-77)||(41197233-41197300)
chr2 (6-76)||(4807805-4807871)
chr2 (96-169)||(10062945-10063018)
chr2 (6-79)||(451654-451723)
chr2 (6-79)||(3243659-3243728)
chr2 (6-79)||(7326166-7326235)
chr2 (47-79)||(8197584-8197616)
chr2 (47-79)||(8202344-8202376)
chr2 (6-79)||(9531606-9531675)
chr2 (8-77)||(19024387-19024452)
chr2 (6-79)||(25834885-25834954)
[»] scaffold0168 (1 HSPs)
scaffold0168 (6-79)||(28895-28964)
[»] chr8 (11 HSPs)
chr8 (6-79)||(11523729-11523798)
chr8 (6-79)||(12611704-12611773)
chr8 (6-77)||(14742088-14742155)
chr8 (6-79)||(30559900-30559974)
chr8 (6-76)||(1928593-1928659)
chr8 (6-79)||(490542-490611)
chr8 (6-79)||(12491144-12491213)
chr8 (6-79)||(25473409-25473478)
chr8 (6-79)||(36545356-36545425)
chr8 (6-79)||(44529432-44529501)
chr8 (6-79)||(45419442-45419511)
[»] chr6 (7 HSPs)
chr6 (5-79)||(31819038-31819108)
chr6 (6-79)||(12890782-12890851)
chr6 (6-79)||(28085583-28085652)
chr6 (47-79)||(32945455-32945487)
chr6 (6-79)||(34143771-34143840)
chr6 (6-79)||(34156387-34156456)
chr6 (6-79)||(34934836-34934905)
[»] scaffold1318 (1 HSPs)
scaffold1318 (6-79)||(538-607)
[»] scaffold0570 (1 HSPs)
scaffold0570 (6-79)||(954-1023)
[»] scaffold0024 (1 HSPs)
scaffold0024 (6-79)||(82925-82994)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 56200226 - 56200006
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcatagctgaccttattaattagtccatcat 105  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56200226 acaaacaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcatagctgaccttattaattagtccatcat 56200127  T
Q  106 caatgactgcactgctgatcttcttgaaaagttcataaagtgcttcaatctcacttacactaaccacggtctctcttgcaagaagttgtggattttgtaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  56200126 caatgactgcactgctgatcttcttgaaaagttcataaagtgcttcaatctcacttacactaaacacggtctctcttgcaagaagttgtggattttgtaa 56200027  T
Q  206 accaataggttgttgatttaa 226  Q
    |||||||||||||||||||||    
T  56200026 accaataggttgttgatttaa 56200006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 1777023 - 1777092
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||||| | |||| ||||||||    |||||||||| ||||||||| ||||||||||||    
T  1777023 acaaccaagccttatcccattaagtggggtcggctac----atggatcaaatgacgccatactgttctatcata 1777092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 31959820 - 31959889
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||    |||||||||| ||||||||| ||||||||||||    
T  31959820 acaaccaagccttatcccactaagtggggtcggctac----atggatcaaatgacgccatagtgttctatcata 31959889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 45209211 - 45209280
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||    ||||||||||| |||||||||| ||||||||||    
T  45209211 acaaccaagccttatcccactaagtggggtcggctac----atggatcaaactacgccataatattctatcata 45209280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 52569521 - 52569590
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||    |||||||||| ||||||||| ||||||||||||    
T  52569521 acaaccaagccttatcccactaagtggggtcggctac----atggatcaaatgacgccatagtgttctatcata 52569590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 27983469 - 27983427
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggat 48  Q
    |||||||| |||||||||||| |||||| ||||||||||||||    
T  27983469 acaaccaaaccttatcccattaattgggatcggctacatggat 27983427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 37042670 - 37042737
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatca 77  Q
    ||||||||||||||||||| | | | || ||||||||||||    |||||||||| ||||||||||||||||    
T  37042670 acaaccaagccttatcccactaagtcgggtcggctacatgg----atcaaacgacaccataatgttctatca 37042737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 27450187 - 27450253
Alignment:
Q  7 caaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatca 77  Q
    |||||||||||||||||| | | |||| ||||||||    |||||||||| ||||||||| ||||||||||    
T  27450187 caaccaagccttatcccactaagtggggtcggctac----atggatcaaatgacgccatagtgttctatca 27450253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 436505 - 436436
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||    |||||||| || |||||| ||||||||||||    
T  436505 acaaccaagccttatcccactaagtggggtcggctacat----ggatcaaatgatgccatagtgttctatcata 436436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 6957874 - 6957805
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||    |||||||| |||| |||| ||||||||||||    
T  6957874 acaaccaagccttatcccactaagtgggatcggctacat----ggatcaaatgacgtcatagtgttctatcata 6957805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 19061941 - 19062010
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| |   |||| ||||||||||||||    |||| ||||||||| ||||||||||||    
T  19061941 acaaccaagccttatcccactaggtggggtcggctacatggat----caaatgacgccatagtgttctatcata 19062010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 23906303 - 23906372
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| || |||||||||||    |||| ||||||||| ||||||||||||    
T  23906303 acaaccaagccttatcccactaagtggggtcagctacatggat----caaatgacgccatagtgttctatcata 23906372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 29209181 - 29209250
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||| ||||||||||| | |||| ||||||||    || |||||||| ||||||||||| |||||||||    
T  29209181 acaaccaagtcttatcccattaagtggggtcggctac----attgatcaaacaacgccataatgctctatcata 29209250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 32339798 - 32339766
Alignment:
Q  47 atggatcaaacgacgccataatgttctatcata 79  Q
    |||||||||||||||||||||| ||||||||||    
T  32339798 atggatcaaacgacgccataattttctatcata 32339766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 40018232 - 40018264
Alignment:
Q  47 atggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||| |||||||||||||||    
T  40018232 atggatcaaacgacgccgtaatgttctatcata 40018264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 48174099 - 48174168
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| || |||||||||||    |||| |||||||||||||| |||||||    
T  48174099 acaaccaagccttatcccactaagtggggtctgctacatggat----caaatgacgccataatgttttatcata 48174168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 48622549 - 48622618
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||||||     ||| ||||||||| ||||||||||||    
T  48622549 acaaccaagccttatcccactaagtggggtcggctacatggatt----aaatgacgccatagtgttctatcata 48622618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 49738556 - 49738625
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||    |||||||||||  |||||||||||||| |||||    
T  49738556 acaaccaagccttatcccactaaatggggtcggctac----atggatcaaacaccgccataatgttctgtcata 49738625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 36869243 - 36869319
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatgg---atggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||||| | |||| ||||||||||||   |||||||||| ||||||||| ||||||||||||    
T  36869243 acaaccaagccttatcccattaagtggggtcggctacatggatcatggatcaaatgacgccatagtgttctatcata 36869319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 6375144 - 6375075
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||    |||||||| ||||||||| ||||||||||||    
T  6375144 acaaccaagccttatcccactaagtggggtcggctacat----ggatcaaatgacgccatagtgttctatcata 6375075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 6807443 - 6807411
Alignment:
Q  47 atggatcaaacgacgccataatgttctatcata 79  Q
    |||||||||||||||||||||||||||||||||    
T  6807443 atggatcaaacgacgccataatgttctatcata 6807411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 11594236 - 11594167
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||    |||||||| ||||||||| ||||||||||||    
T  11594236 acaaccaagccttatcccactaagtggggtcggctacat----ggatcaaatgacgccatagtgttctatcata 11594167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 12841281 - 12841350
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||    |||||||||| ||||||||| ||||||||||||    
T  12841281 acaaccaagccttatcccactaagtggggtcggctac----atggatcaaatgacgccatagtgttctatcata 12841350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 28208334 - 28208403
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||    |||||||||| ||||||||| ||||||||||||    
T  28208334 acaaccaagccttatcccactaagtggggtcggctac----atggatcaaatgacgccatagtgttctatcata 28208403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 31682608 - 31682677
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||    |||||||||| ||||||||| ||||||||||||    
T  31682608 acaaccaagccttatcccactaagtggggtcggctac----atggatcaaatgacgccatagtgttctatcata 31682677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 34869696 - 34869627
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | ||| || ||||||||||    |||||||| ||||||||| ||||||||||||    
T  34869696 acaaccaagccttatcccactaattagggtcggctacat----ggatcaaatgacgccatagtgttctatcata 34869627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 39906378 - 39906447
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||    |||||||||| ||||||||| ||||||||||||    
T  39906378 acaaccaagccttatcccactaagtggggtcggctac----atggatcaaatgacgccatagtgttctatcata 39906447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 35906208 - 35906276
Alignment:
Q  7 caaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    |||||||||||||||||| | | |||| ||||||||    |||||||||| ||||||||| ||||||||||||    
T  35906208 caaccaagccttatcccactaagtggggtcggctac----atggatcaaatgacgccatagtgttctatcata 35906276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 21078193 - 21078124
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | ||   ||||||||    |||||||||| ||||||||||||||||||||||    
T  21078193 acaaccaagccttatcccactaaatgaagtcggctac----atggatcaaatgacgccataatgttctatcata 21078124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 37618221 - 37618152
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||    |||||||| ||| ||||| ||||||||||||    
T  37618221 acaaccaagccttatcccactaagtggggtcggctacat----ggatcaaatgacaccatagtgttctatcata 37618152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 40979934 - 40980003
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||    ||||||||||  |||||||| ||||||||||||    
T  40979934 acaaccaagccttatcccactaagtggggtcggctac----atggatcaaattacgccatagtgttctatcata 40980003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 45836488 - 45836557
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    |||||| |||||||||||| | | |||| ||||||||||||||    |||| ||||||||| ||||||||||||    
T  45836488 acaaccgagccttatcccactaagtggggtcggctacatggat----caaatgacgccatagtgttctatcata 45836557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 28186788 - 28186857
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||||||| | || |||||| |||||    |||||||||||||||||||||||||||||    
T  28186788 acaaccaagccttatcccattgagtagggtcggctgcatgg----atcaaacgacgccataatgttctatcata 28186857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 42160902 - 42160832
Alignment:
Q  99 ccatcatcaatgactgcactgctgatcttcttgaaaagttcataaagtgcttcaatctcacttacactaac 169  Q
    ||||||||||| || |||||||||||||| || || || |||||||| |||||||| ||||||||||||||    
T  42160902 ccatcatcaatcaccgcactgctgatctttttaaagagctcataaagagcttcaatttcacttacactaac 42160832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 20457049 - 20456980
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    |||| |||||||||||||| | | |||| ||||||||||||||    |||| ||||||||||||||||||||||    
T  20457049 acaatcaagccttatcccactaagtggggtcggctacatggat----caaatgacgccataatgttctatcata 20456980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 29816658 - 29816589
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||    |||||||| ||||||||| ||||||||||||    
T  29816658 acaaccaagccttatcccactaagtggggtcggctacat----ggatcaaatgacgccatagtgttctatcata 29816589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 30213851 - 30213782
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||    |||||||| ||||||||| ||||||||||||    
T  30213851 acaaccaagccttatcccactaagtggggtcggctacat----ggatcaaatgacgccatagtgttctatcata 30213782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 38685242 - 38685174
Alignment:
Q  7 caaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    |||||||||||||||||| | | |||| ||||||||||    |||||||| ||||||||| ||||||||||||    
T  38685242 caaccaagccttatcccactaagtggggtcggctacat----ggatcaaatgacgccatattgttctatcata 38685174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 2915504 - 2915571
Alignment:
Q  8 aaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||| | | |||| ||||||||    |||||||||| ||||||||| ||||||||||||    
T  2915504 aaccaagccttatcccactaagtggggtcggctac----atggatcaaatgacgccatagtgttctatcata 2915571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 4496660 - 4496591
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||    |||||||| || |||||| ||||||||||||    
T  4496660 acaaccaagccttatcccactaagtggggtcggctacat----ggatcaaatgatgccatagtgttctatcata 4496591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 10639578 - 10639509
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    |||||||||||||||||||   | |||| ||||||||||||||    |||| ||||||||| ||||||||||||    
T  10639578 acaaccaagccttatcccacaaagtggggtcggctacatggat----caaatgacgccatagtgttctatcata 10639509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 11675806 - 11675737
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||| | | | |||| ||||||||||||||     |||| |||||||||||||||||||||    
T  11675806 acaaccaagccttatccaactaagtggggtcggctacatggatt----aaactacgccataatgttctatcata 11675737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 12492390 - 12492459
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||    ||| |||||| ||||||||| ||||||||||||    
T  12492390 acaaccaagccttatcccactaagtggggtcggctac----atgcatcaaatgacgccatagtgttctatcata 12492459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 28976865 - 28976934
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||    ||| |||||| ||||||||| ||||||||||||    
T  28976865 acaaccaagccttatcccactaagtggggtcggctac----atgaatcaaatgacgccatagtgttctatcata 28976934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 38132612 - 38132543
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||| ||||||||    ||||  |||||||||||||||||||||    
T  38132612 acaaccaagccttatcccactaagtggggtcggccacatggat----caaattacgccataatgttctatcata 38132543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 38877348 - 38877415
Alignment:
Q  5 cacaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatc 76  Q
    |||||||||||||||||||| | | |||||||||||||    |||||||||| |||||||||||||||||||    
T  38877348 cacaaccaagccttatcccactaagtgggttcggctac----atggatcaaatgacgccataatgttctatc 38877415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 34792355 - 34792424
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||||| | |||| ||||||||    |||||||||| ||||||||| ||||||||||||    
T  34792355 acaaccaagccttatcccattaagtggggtcggctac----atggatcaaatgacgccatagtgttctatcata 34792424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 1211021 - 1210952
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||    |||||||| ||||||||| ||||||||||||    
T  1211021 acaaccaagccttatcccactaagtggggtcggctacat----ggatcaaatgacgccatagtgttctatcata 1210952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 9593010 - 9592941
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||||| | |||| ||||||||||    |||||||| ||||| ||| ||||||||||||    
T  9593010 acaaccaagccttatcccattaagtggggtcggctacat----ggatcaaatgacgctatagtgttctatcata 9592941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 25979237 - 25979306
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||    |||||||||| ||||||||| ||||||||||||    
T  25979237 acaaccaagccttatcccactaagtggggtcggctac----atggatcaaatgacgccatagtgttctatcata 25979306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 29577528 - 29577459
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||    |||||||| ||||||||| ||||||||||||    
T  29577528 acaaccaagccttatcccactaagtggggtcggctacat----ggatcaaatgacgccatagtgttctatcata 29577459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 30202136 - 30202205
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||    |||||||||| ||||||||| ||||||||||||    
T  30202136 acaaccaagccttatcccactaagtggggtcggctac----atggatcaaatgacgccatagtgttctatcata 30202205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 38869121 - 38869089
Alignment:
Q  47 atggatcaaacgacgccataatgttctatcata 79  Q
    |||||||||||||||||||||||||||||||||    
T  38869121 atggatcaaacgacgccataatgttctatcata 38869089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 41560505 - 41560436
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||    ||||||||  |||||||||||||||||||||    
T  41560505 acaaccaagccttatcccactaagtggggtcggctacat----ggatcaaattacgccataatgttctatcata 41560436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 49347399 - 49347468
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||    |||||||||| ||||||||| ||||||||||||    
T  49347399 acaaccaagccttatcccactaagtggggtcggctac----atggatcaaatgacgccatagtgttctatcata 49347468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 853787 - 853860
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    |||||| |||||||||||| | | |||| ||||||||||  |||||| ||||  |||||||| |||||||||||    
T  853787 acaaccgagccttatcccactaagtggggtcggctacatacatggatgaaactccgccataacgttctatcata 853860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 49377578 - 49377508
Alignment:
Q  5 cacaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    |||||||||||||||||||| | | |||  ||||||||||||||    |||||  ||||||||||||||||||||    
T  49377578 cacaaccaagccttatcccactaactggagtcggctacatggat----caaacaccgccataatgttctatcata 49377508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 109036 - 109068
Alignment:
Q  47 atggatcaaacgacgccataatgttctatcata 79  Q
    |||||||||| ||||||||||||||||||||||    
T  109036 atggatcaaatgacgccataatgttctatcata 109068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 8796485 - 8796416
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||||||     |||  |||||||||||||||||||||    
T  8796485 acaaccaagccttatcccactaagtggggtcggctacatggatt----aaattacgccataatgttctatcata 8796416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 16943394 - 16943362
Alignment:
Q  47 atggatcaaacgacgccataatgttctatcata 79  Q
    |||||||||||| ||||||||||||||||||||    
T  16943394 atggatcaaacgccgccataatgttctatcata 16943362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 22090372 - 22090303
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||    |||||||| |||| |||| ||||||||||||    
T  22090372 acaaccaagccttatcccacttagtggggtcggctacat----ggatcaaatgacgtcatagtgttctatcata 22090303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 28090700 - 28090769
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||| ||||||||| | | |||| ||||||||||||||    ||||  |||||||||||||||||||||    
T  28090700 acaaccaagtcttatcccactaagtggggtcggctacatggat----caaattacgccataatgttctatcata 28090769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 37462882 - 37462947
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctat 75  Q
    ||||||||||||||||||| | | |||| ||||||||    ||||||||||  |||||||||||||||||    
T  37462882 acaaccaagccttatcccactaagtggggtcggctac----atggatcaaattacgccataatgttctat 37462947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 44751760 - 44751691
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | || | ||||||||||||||    |||| ||||||||| ||||||||||||    
T  44751760 acaaccaagccttatcccactaagtgaggtcggctacatggat----caaatgacgccatagtgttctatcata 44751691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 44941782 - 44941851
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||    ||||||||||  |||||||| ||||||||||||    
T  44941782 acaaccaagccttatcccactaagtggggtcggctac----atggatcaaattacgccatagtgttctatcata 44941851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 51602332 - 51602263
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| | ||||||||||||    |||| |||||||| |||||||||||||    
T  51602332 acaaccaagccttatcccactaagtggggttggctacatggat----caaatgacgccatgatgttctatcata 51602263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 52921356 - 52921287
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||    |||||||| ||||| ||| ||||||||||||    
T  52921356 acaaccaagccttatcccactaagtggggtcggctacat----ggatcaaatgacgcaatagtgttctatcata 52921287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 7895886 - 7895955
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||||| | |||| ||||||||    |||||||||| ||||||||| ||||||||||||    
T  7895886 acaaccaagccttatcccattaagtggggtcggctac----atggatcaaatgacgccatagtgttctatcata 7895955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 48532234 - 48532164
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||   ||||||||| ||||||||| ||||||||||||    
T  48532234 acaaccaagccttatcccactaagtggggtcggctacat---tggatcaaatgacgccatagtgttctatcata 48532164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 12096711 - 12096780
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||    |||||||||| ||||||||| ||||||||||||    
T  12096711 acaaccaagccttatcccactaagtggggtcggctac----atggatcaaatgacgccatagtgttctatcata 12096780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 24091653 - 24091586
Alignment:
Q  99 ccatcatcaatgactgcactgctgatcttcttgaaaagttcataaagtgcttcaatctcacttacact 166  Q
    ||||||||||| || |||||||||||||| ||||| || ||||| |||||||| || ||||| |||||    
T  24091653 ccatcatcaattacagcactgctgatctttttgaagagctcatacagtgcttctatttcactaacact 24091586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 5169108 - 5169041
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatca 77  Q
    ||||||||||||||||||| | | |||| ||||||||||    |||||||| ||||||||| ||||||||||    
T  5169108 acaaccaagccttatcccactaagtggggtcggctacat----ggatcaaatgacgccatagtgttctatca 5169041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 2340760 - 2340792
Alignment:
Q  47 atggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||| |||||||||||||||||||||    
T  2340760 atggatcaaacaacgccataatgttctatcata 2340792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 46367430 - 46367462
Alignment:
Q  47 atggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||| |||||||||||||||||    
T  46367430 atggatcaaacgacgtcataatgttctatcata 46367462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 47555338 - 47555407
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| | ||||||||||||    |||| ||||||||| ||||||||||||    
T  47555338 acaaccaagccttatcccactaagtggggttggctacatggat----caaatgacgccatagtgttctatcata 47555407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 48508511 - 48508442
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||    ||||||||  |||||||| ||||||||||||    
T  48508511 acaaccaagccttatcccactaagtggggtcggctacat----ggatcaaattacgccatagtgttctatcata 48508442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 55244517 - 55244485
Alignment:
Q  47 atggatcaaacgacgccataatgttctatcata 79  Q
    |||||||||||||| ||||||||||||||||||    
T  55244517 atggatcaaacgacaccataatgttctatcata 55244485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 39029863 - 39029790
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctaca--tggatggatcaaacgacgccataatgttctatca 77  Q
    ||||||||||||||||||| | | |||| |||||||||  |  |||||||||| ||||||||||||||||||||    
T  39029863 acaaccaagccttatcccactaagtggggtcggctacacctacatggatcaaatgacgccataatgttctatca 39029790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 227465 - 227396
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||    |||||||| ||||||||| ||||||||||||    
T  227465 acaaccaagccttatcccactaagtggggtcggctacat----ggatcaaatgacgccatagtgttctatcata 227396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 12474933 - 12475002
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||    |||||||||| ||||||||| ||||||||||||    
T  12474933 acaaccaagccttatcccactaagtggggtcggctac----atggatcaaatgacgccatagtgttctatcata 12475002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 28508954 - 28508885
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||    |||||||| ||||||||| ||||||||||||    
T  28508954 acaaccaagccttatcccactaagtggggtcggctacat----ggatcaaatgacgccatagtgttctatcata 28508885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 30306308 - 30306239
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||    |||||||| ||||||||| ||||||||||||    
T  30306308 acaaccaagccttatcccactaagtggggtcggctacat----ggatcaaatgacgccatagtgttctatcata 30306239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 33504500 - 33504431
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| |||||||    |||||||||||  |||||||||||||||||||||    
T  33504500 acaaccaagccttatcccactaagtggggtcggcta----gatggatcaaattacgccataatgttctatcata 33504431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 3635329 - 3635396
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatca 77  Q
    ||||||||||||||||||| | | |||| ||||||||    |||||||||| ||||||||| ||||||||||    
T  3635329 acaaccaagccttatcccactaagtggggtcggctac----atggatcaaatgacgccatagtgttctatca 3635396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 41197233 - 41197300
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatca 77  Q
    ||||||||||||||||||||  | |||| ||| ||||    |||||||||| ||||||||||||||||||||    
T  41197233 acaaccaagccttatcccatcaagtggggtcgactac----atggatcaaatgacgccataatgttctatca 41197300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 4807871 - 4807805
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatc 76  Q
    ||||||||||||||||||| | | |||| ||||||||||    |||||||| ||||||||| |||||||||    
T  4807871 acaaccaagccttatcccactaagtggggtcggctacat----ggatcaaatgacgccatagtgttctatc 4807805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 10063018 - 10062945
Alignment:
Q  96 agtccatcatcaatgactgcactgctgatcttcttgaaaagttcataaagtgcttcaatctcacttacactaac 169  Q
    |||||||| ||||  |||||||||||||||||||| || ||||| || | |||||||| ||| |||||| ||||    
T  10063018 agtccatcgtcaacaactgcactgctgatcttcttaaatagttcgtacaatgcttcaacctcgcttacagtaac 10062945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 451654 - 451723
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||| ||||| | | |||| ||||||||||||||    |||| ||||||||| ||||||||||||    
T  451654 acaaccaagccttgtcccactaagtggggtcggctacatggat----caaatgacgccatagtgttctatcata 451723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 3243659 - 3243728
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||     ||||||||| ||||||||| ||||||||||||    
T  3243659 acaaccaagccttatcccactaagtggggtcggctac----ctggatcaaatgacgccatagtgttctatcata 3243728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 7326166 - 7326235
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| | ||||||||||||    |||| ||||||||| ||||||||||||    
T  7326166 acaaccaagccttatcccactaagtggggttggctacatggat----caaatgacgccatagtgttctatcata 7326235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 8197584 - 8197616
Alignment:
Q  47 atggatcaaacgacgccataatgttctatcata 79  Q
    |||||||||||||||||||||| ||||||||||    
T  8197584 atggatcaaacgacgccataatattctatcata 8197616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 8202344 - 8202376
Alignment:
Q  47 atggatcaaacgacgccataatgttctatcata 79  Q
    |||||||||||||||||||||| ||||||||||    
T  8202344 atggatcaaacgacgccataatattctatcata 8202376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 9531606 - 9531675
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||    ||||||||||  |||||||||||||| ||||||    
T  9531606 acaaccaagccttatcccactaagtggggtcggctac----atggatcaaattacgccataatgttccatcata 9531675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 19024452 - 19024387
Alignment:
Q  8 aaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatca 77  Q
    ||||||||||||||||| ||| |||| |||||||     || |||||||||||||||||| |||||||||    
T  19024452 aaccaagccttatcccactgagtggggtcggcta----tatagatcaaacgacgccataaagttctatca 19024387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 25834954 - 25834885
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||    |||||||| ||||||| | ||||||||||||    
T  25834954 acaaccaagccttatcccactaagtggggtcggctacat----ggatcaaatgacgccacagtgttctatcata 25834885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 28895 - 28964
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||    |||||||||| ||||||||| ||||||||||||    
T  28895 acaaccaagccttatcccactaagtggggtcggctac----atggatcaaatgacgccatagtgttctatcata 28964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 11523729 - 11523798
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||    |||||||||| ||||||||| ||||||||||||    
T  11523729 acaaccaagccttatcccactaagtggggtcggctac----atggatcaaatgacgccatagtgttctatcata 11523798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 12611773 - 12611704
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | |||||| ||||||||||    |||||||||||| |||||| |||||| ||||    
T  12611773 acaaccaagccttatcccactaattgggatcggctacat----ggatcaaacgacaccataaagttctaacata 12611704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 14742088 - 14742155
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatca 77  Q
    ||||||||||||||||||| | | |||| ||||||||    |||||||||| ||||||||| ||||||||||    
T  14742088 acaaccaagccttatcccactaagtggggtcggctac----atggatcaaatgacgccatagtgttctatca 14742155  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 30559974 - 30559900
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctaca-tggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||| |  ||||||||||  ||| |||||||||||||||||    
T  30559974 acaaccaagccttatcccactaactggggtcggctacattacatggatcaaattacgtcataatgttctatcata 30559900  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 1928593 - 1928659
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatc 76  Q
    ||||||||||||||||||| | | |||| ||||||||    ||||||||||  ||||||||||||||||||    
T  1928593 acaaccaagccttatcccactaagtggggtcggctac----atggatcaaattacgccataatgttctatc 1928659  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 490611 - 490542
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    |||| |||||||||||||| | | |||| ||||||||||||||    ||||  |||||||||||||||||||||    
T  490611 acaaacaagccttatcccactaagtggggtcggctacatggat----caaattacgccataatgttctatcata 490542  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 12491144 - 12491213
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||| ||||||||||||| | | |||| ||||||||||||||    |||| ||||||||| ||||||||||||    
T  12491144 acaactaagccttatcccactaagtggggtcggctacatggat----caaatgacgccatagtgttctatcata 12491213  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 25473409 - 25473478
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||    |||||||||| ||||| ||| ||||||||||||    
T  25473409 acaaccaagccttatcccactaagtggggtcggctac----atggatcaaatgacgctatagtgttctatcata 25473478  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 36545425 - 36545356
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||    |||||||| |||| |||| ||||||||||||    
T  36545425 acaaccaagccttatcccactaagtggggtcggctacat----ggatcaaatgacgtcatagtgttctatcata 36545356  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 44529501 - 44529432
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||    |||||||| || |||||| ||||||||||||    
T  44529501 acaaccaagccttatcccactaagtggggtcggctacat----ggatcaaatgatgccatagtgttctatcata 44529432  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 45419511 - 45419442
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||||||    ||||  || ||||||||||||||||||    
T  45419511 acaaccaagccttatcccactaagtggggtcggctacatggat----caaattacaccataatgttctatcata 45419442  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 31819108 - 31819038
Alignment:
Q  5 cacaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||| |||||||| | | |||| ||||||||||||||    |||| ||||||||| ||||||||||||    
T  31819108 cacaaccaagcattatcccactaagtggggtcggctacatggat----caaatgacgccatagtgttctatcata 31819038  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 12890851 - 12890782
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||    ||||||||  |||||||| ||||||||||||    
T  12890851 acaaccaagccttatcccactaagtggggtcggctacat----ggatcaaattacgccatagtgttctatcata 12890782  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 28085652 - 28085583
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||||    |||||||| ||| ||||| ||||||||||||    
T  28085652 acaaccaagccttatcccactaagtggggtcggctacat----ggatcaaatgacaccatagtgttctatcata 28085583  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 32945487 - 32945455
Alignment:
Q  47 atggatcaaacgacgccataatgttctatcata 79  Q
    |||||||||||||| ||||||||||||||||||    
T  32945487 atggatcaaacgacaccataatgttctatcata 32945455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 34143771 - 34143840
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||| ||||||||||    |||| ||||||||| ||||||||||||    
T  34143771 acaaccaagccttatcccaataagtggggtcgactacatggat----caaatgacgccatagtgttctatcata 34143840  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 34156387 - 34156456
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||| ||||||||||    |||| ||||||||| ||||||||||||    
T  34156387 acaaccaagccttatcccaataagtggggtcgactacatggat----caaatgacgccatagtgttctatcata 34156456  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 34934836 - 34934905
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| ||||||||    |||||||||| || |||||| ||||||||||||    
T  34934836 acaaccaagccttatcccactaagtggggtcggctac----atggatcaaatgaggccatagtgttctatcata 34934905  T

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Target: scaffold1318 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 607 - 538
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    |||| |||||||||||||| | | |||| ||||||||||||||    |||| ||||||||| ||||||||||||    
T  607 acaatcaagccttatcccactaagtggggtcggctacatggat----caaatgacgccatagtgttctatcata 538  T

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Target: scaffold0570 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 954 - 1023
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||||||| | | |||| || |||||||||||    |||| ||||||||| ||||||||||||    
T  954 acaaccaagccttatcccactaaatggggtcagctacatggat----caaatgacgccatagtgttctatcata 1023  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 82994 - 82925
Alignment:
Q  6 acaaccaagccttatcccattgattgggttcggctacatggatggatcaaacgacgccataatgttctatcata 79  Q
    ||||||||||||||| ||||| | |||| ||||||||||    |||||||| |||| |||| ||||||||||||    
T  82994 acaaccaagccttattccattaagtggggtcggctacat----ggatcaaatgacgtcatagtgttctatcata 82925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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