View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4968_low_4 (Length: 549)
Name: NF4968_low_4
Description: NF4968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4968_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Complemental strand, 39073740 - 39073306
Alignment:
| Q |
18 |
caataacaaagcactaggagttgtagaattaatgcattgtgatgaaagtggcaattgaatgtgttgttgttgttgattttgaggagtggattgaagcaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39073740 |
caataacaaagcactaggagttgtagaattaatgcattgtgatgaaagtggcaattgaatgtgttgttgttgttgattttgaggagtggattgaagcaac |
39073641 |
T |
|
| Q |
118 |
ttgatttgtctcttcaaaaacttaacataacgaatggcttcatcaagcatagaagctgtatccattttagttccaccaggaacaagtctttgaaggatac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39073640 |
ttgatttgtctcttcaaaaacttaacataacgaatggcttcatcaagcatagaagctgtatccattttagttccaccaggaacaagtctttgaaggatac |
39073541 |
T |
|
| Q |
218 |
gaatcttctcactgattctttctcttctatgtctagctgcaacactttgtggatcttcgctgattcgaacgtttcttcgttttggttttcgaatcgttgc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39073540 |
gaatcttctcactgattctttctcttctatgtctagctgcaacactttgtggatcttcgctgattcgaacgtttcttcgttttggttttcgaatcgttgc |
39073441 |
T |
|
| Q |
318 |
tgggtcgatgtccaccggttgcatagctgcaatcttgtacatcatttccttcatagctcctaactcttcttcttgttcttctacgtcttcgattcgatgg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39073440 |
tgggtcgatgtccaccggttgcatagctgcaatcttgtacatcatttccttcatagctcctaactcttcttcttgttcttctacgtcttcgattcgatgg |
39073341 |
T |
|
| Q |
418 |
atccctaagatgtcactgagtgaacctgatgaaga |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
39073340 |
atccctaagatgtcactgagtgaacctgatgaaga |
39073306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 472 - 530
Target Start/End: Complemental strand, 25773321 - 25773263
Alignment:
| Q |
472 |
tgaagtaaagcaaacttaacgtcatagctacgaaaaccagcttctgcaaaaaccctact |
530 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25773321 |
tgaagtaaagcaaacttaacatcatagctacgaaaaccagcttctgcaaaaaccctact |
25773263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 135 - 274
Target Start/End: Complemental strand, 46899443 - 46899304
Alignment:
| Q |
135 |
aaacttaacataacgaatggcttcatcaagcatagaagctgtatccattttagttccaccaggaacaagtctttgaaggatacgaatcttctcactgatt |
234 |
Q |
| |
|
||||||||||||| |||| |||||||| | ||| || || |||||||||||||||||||| || || | |||||| || || | || ||||| || ||| |
|
|
| T |
46899443 |
aaacttaacataatgaatagcttcatccaacattgatgcagtatccattttagttccacctggtaccattctttgcagtattcttattttctcgcttatt |
46899344 |
T |
|
| Q |
235 |
ctttctcttctatgtctagctgcaacactttgtggatctt |
274 |
Q |
| |
|
||||||||||| ||||||||||| | ||| || ||||||| |
|
|
| T |
46899343 |
ctttctcttctgtgtctagctgctatactctgaggatctt |
46899304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 272
Target Start/End: Complemental strand, 6259729 - 6259580
Alignment:
| Q |
123 |
ttgtctcttcaaaaacttaacataacgaatggcttcatcaagcatagaagctgtatccattttagttccaccaggaacaagtctttgaaggatacgaatc |
222 |
Q |
| |
|
|||| ||||||||||||| |||||| | || |||||||| | ||||||||| || |||||||| ||||||||||| || | |||||| | || | || |
|
|
| T |
6259729 |
ttgtttcttcaaaaacttcacataatgtattgcttcatctaacatagaagcagtgtccatttttgttccaccaggtactaatctttgtaatatccttatt |
6259630 |
T |
|
| Q |
223 |
ttctcactgattctttctcttctatgtctagctgcaacactttgtggatc |
272 |
Q |
| |
|
| ||||| |||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
6259629 |
ctttcactaattctttctcttctatgtcttgctgctacactttgtggatc |
6259580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 25645275 - 25645321
Alignment:
| Q |
226 |
tcactgattctttctcttctatgtctagctgcaacactttgtggatc |
272 |
Q |
| |
|
||||||||||| | |||||| | |||||||||||||||||||||||| |
|
|
| T |
25645275 |
tcactgattctatgtcttctttctctagctgcaacactttgtggatc |
25645321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University