View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4968_low_5 (Length: 534)
Name: NF4968_low_5
Description: NF4968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4968_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 18 - 520
Target Start/End: Complemental strand, 52810803 - 52810299
Alignment:
| Q |
18 |
ggatctttgttctccaatactgtattggtctattatgaggacacagggaagtggacaatgggtttctttatatcattgatctctgctatcatagcccttt |
117 |
Q |
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| T |
52810803 |
ggatctttgttctccaatactgtattggtctattatgaggacacggggaagtggacaatgggtttctttatatcattgatctctgctatcatagcccttt |
52810704 |
T |
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| Q |
118 |
tgacatttttatcaggatctcctaaatatagatacttgaagccatcaggaaaccctgtcgtaagggttgctcaggtttttacagctgctgctaggaaatg |
217 |
Q |
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| T |
52810703 |
tgacatttttatcaggatctcctaaatatagatacttgaagccatcaggaaaccctgtcgtaagggttgctcaggtttttacagctgctgctaggaaatg |
52810604 |
T |
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| Q |
218 |
ggatgttgctccagccaaggcagacaaactttttgaggttctgggttctagatctgccatcaaaggttgtagaaagattctccacagtgatgattttcgg |
317 |
Q |
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| T |
52810603 |
ggatgttgctccagccaaggcagacaaactttttgaggttctgggttctagatctgccatcaaaggttgtagaaagattctgcacagtgatgattttcgg |
52810504 |
T |
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| Q |
318 |
taagctagctctgagataaaacaaaacattattaacttgaagttgaaccaaacaaagtgatatagcaagcaagctatattaatttctaaaaaagatggaa |
417 |
Q |
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| T |
52810503 |
taagctagctctgagataaaacaaaacattattaacttgaagttgaaccaaacaaagtgatatagcaagcaagctatattaatttctaaaaaagatggaa |
52810404 |
T |
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| Q |
418 |
gaaagaaccccaaacattagatgaatttaat---taataatattttgaccttcaactcattggtaagagttttaccctttaacccatctcaagaaacgga |
514 |
Q |
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| T |
52810403 |
gaaagaa-cccaaacattagatgaatttaattaataataatattttgaccttcaactcattggtaagagttttaccctttaacccatctcaagaaacgga |
52810305 |
T |
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| Q |
515 |
gtataa |
520 |
Q |
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| T |
52810304 |
gtataa |
52810299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 514
Target Start/End: Complemental strand, 52810268 - 52810228
Alignment:
| Q |
474 |
ttggtaagagttttaccctttaacccatctcaagaaacgga |
514 |
Q |
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| T |
52810268 |
ttggtaagggttttaccctttaacctatctcaagagacgga |
52810228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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