View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4968_low_6 (Length: 481)
Name: NF4968_low_6
Description: NF4968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4968_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 38 - 477
Target Start/End: Original strand, 1561948 - 1562402
Alignment:
| Q |
38 |
gggtacaaattccataagctcttctaaattctctcccgtgtttatattaatagataaactcaaataaattaattcaaacaagttcttaatttcaaccaaa |
137 |
Q |
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| T |
1561948 |
gggtacaaattccataagctcttttaaattctctcatgtgtttatattaatagataaactcaaataaattaatccaaacaaattcttaatttcaaccaaa |
1562047 |
T |
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| Q |
138 |
aaagagggtatac--------------aagctctaaatctttaattccaatttgcctcctatgaattcaattgctgctacgttaatttaagatgaaaatc |
223 |
Q |
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| T |
1562048 |
aaagagggtatactgcaaccaaaaaacaagctctaaatctttaattccaatttgcctcctatgaattcaattgctgctacgttaatttaagatgaaaatc |
1562147 |
T |
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| Q |
224 |
aatctctcaatattgttgttgtactcgtgtggttgctgtccctttatgttcactgtatgctgtgtttaaggtgtccttttcccttttaattcatatgtat |
323 |
Q |
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| T |
1562148 |
aatctctcaatattgttgttgtactcgtgtggttgctgtccctttatgttctctgtaggctgtgtttaaggtgtccttttaccttttaattcatatgtat |
1562247 |
T |
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| Q |
324 |
ttgctacgagtcttttgatttaaagtttccatcattaacagtttgatctattttgtttttattttgctctttaatatgaattcagcaaagataaatgtag |
423 |
Q |
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| T |
1562248 |
ttgctacgagtcttttgatttaaagtttccatcattaacagtttgatctattttgtttttattttgctctttaatatgaattcagcaaagataaatgtag |
1562347 |
T |
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| Q |
424 |
tgcataagtttac-tttgagtctagaatctgagcactgtcttacctatgctactc |
477 |
Q |
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| T |
1562348 |
tgcataagtttacttttgagtctagaatgtgagcaccgtcttaccaatgatactc |
1562402 |
T |
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Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 17361605 - 17361540
Alignment:
| Q |
179 |
ctcctatgaattcaattgctgctacgttaatttaagatgaaaatcaatctctcaatattgttgttg |
244 |
Q |
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| T |
17361605 |
ctcctatgaattcaattgctgctacgttaattcaagatcaaaatcaatctctaaatattgttgttg |
17361540 |
T |
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