View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4969-Insertion-1 (Length: 1093)
Name: NF4969-Insertion-1
Description: NF4969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4969-Insertion-1 |
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| [»] scaffold0408 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 792; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 792; E-Value: 0
Query Start/End: Original strand, 8 - 1050
Target Start/End: Complemental strand, 39261783 - 39260744
Alignment:
| Q |
8 |
taatgatagctaaaaaataagggttctttacatttcttgttgtagannnnnnnnnnnnnnnnnatacattctcttgttgcagatttaggtactatatttg |
107 |
Q |
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|||||||||| || |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39261783 |
taatgatagcgaagaaataaaggttctttacatttcttgttgtagattttttattttatttttatacattctcttgttgcagatttaggtactatatttg |
39261684 |
T |
|
| Q |
108 |
tttactccttctattttcacttccgttcaaaagtgaaaatgtattttcaaacggaagaaaatgtgttttatttggagtgcacattccgagtaattaggtg |
207 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39261683 |
tttactccttttattttcacttccgttcaaaagtgaaaatgtatttttaaacggaagaaaatgtgttttatttggagtgcacatttcgagtaattaggtg |
39261584 |
T |
|
| Q |
208 |
gagataatttctttctaatcctacttataaatgataaggtttaattgtattttttatctctattttttatctcctaaagtatcacacttcttgctatttt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39261583 |
gagataatttctttctaatcctacttataaatgataaggtttaattg-------------tattttttatctcctaaagtatcacacttcttgctatttt |
39261497 |
T |
|
| Q |
308 |
aatcttaactcatattttttgccacacaattagtgacatgagaagcttttaaaggatatgacatc---------agatgttataagaataaattacaaaa |
398 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
39261496 |
aatcttaactcatattttttgccacacaattagtgacatgagaagcttttaaatgatatgacatcaaacatactagatgttataagaataaattacaaaa |
39261397 |
T |
|
| Q |
399 |
agatgaagttatgaaacttacttcacaaatctcgagtttgaaaacactttaatattggaagaccaaaattgcaattagaaataggggcatcaaaattgcg |
498 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
39261396 |
agatgaagttatgaaccttacttcacaaatctcgagtttgaaaacactttaatattgaaagaccaaaattgcaattagaaata-gggcattaaaattgcg |
39261298 |
T |
|
| Q |
499 |
gttttttcataaatagaaggaccaaaattgcatttaaacaaaacttaaataacatttcatattgaataagtttatttagaatattcaatatcagagacta |
598 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39261297 |
gttttttcataaatagaaggatcaaaattgcatttaaacaaaacttaaataacatttcatattgaataagtttatttagaatattcaatatcaaagacta |
39261198 |
T |
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| Q |
599 |
gtttgagacgtcttctaaagttagtggtgaaggtccatcattgtaggatccatcatcattgacacattactatcttgcatgtgatacacttggcttattg |
698 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39261197 |
gtttgagacgtcttctaaagttagtggtgaaggtccatcattgtaggatccatcatcattgacacattactatcttgcatgtgatacacttggcttattg |
39261098 |
T |
|
| Q |
699 |
tatgagatacacttgatttgttgaatgaataacacttgacttgttgcatgtaannnnnnnnnatcttctcttctcctataaa-taataggagattataac |
797 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||| ||||||||| ||||||| |
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| T |
39261097 |
tatgagatacacttgatttgttgaatgaataacacttggcttgttgcatgtaa-ttttttttatcttctcttttcctataaattaataggagtttataac |
39260999 |
T |
|
| Q |
798 |
gtattttgatcattcaaattatagaaatcaaagagtgtgtgctttctctaaatatatagtgtctctcctttcttgttctaatctaattagagactaaatt |
897 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39260998 |
gtattttgatcattcaaattatagaaatcaaagagtgtgtgctttctctaaatatatagtgtctctcctttcttgttctaatccaattagagactaaatt |
39260899 |
T |
|
| Q |
898 |
tatggtttactcatgttgtattcttaattccaagaccaagatatccaaccaaaattttggatattacacttaacaaacacgacttttaagtaacatgatg |
997 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39260898 |
tatggtttactcatgttgtattcttcattccaagaccaagatatccaaccaaaattttggatattacacttaacaaacacgacttttaagtaacatgatg |
39260799 |
T |
|
| Q |
998 |
tcaagtgcatc-agttcgggatctaattcag-agatttatattctcagtgactaa |
1050 |
Q |
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| T |
39260798 |
ccaagtgcatcaagttcgggatctaattcagaagatttatattctcagtgactaa |
39260744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 663 - 706
Target Start/End: Original strand, 16798873 - 16798916
Alignment:
| Q |
663 |
cattactatcttgcatgtgatacacttggcttattgtatgagat |
706 |
Q |
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| T |
16798873 |
cattactatcttgcatgtgatacacttgtcttattacatgagat |
16798916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0408 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 673 - 743
Target Start/End: Complemental strand, 1241 - 1171
Alignment:
| Q |
673 |
ttgcatgtgatacacttggcttattgtatgagatacacttgatttgttgaatgaataacacttgacttgtt |
743 |
Q |
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| T |
1241 |
ttgcatgtgatatacttggcttattgcatgagatacacttggcttattgcatgaataacacttgacttgtt |
1171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 673 - 743
Target Start/End: Original strand, 14752824 - 14752894
Alignment:
| Q |
673 |
ttgcatgtgatacacttggcttattgtatgagatacacttgatttgttgaatgaataacacttgacttgtt |
743 |
Q |
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| T |
14752824 |
ttgcatgtgatatacttggcttattgcatgagatacacttggcttattgcatgaataacacttgacttgtt |
14752894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 638 - 716
Target Start/End: Complemental strand, 32186908 - 32186832
Alignment:
| Q |
638 |
attgtaggatccatcatcattgacacattactatcttgcatgtgatacacttggcttattgtatgagatacacttgatt |
716 |
Q |
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| T |
32186908 |
attgtaggaaccatc--cattgacacattattatcttgcatttgataaacttggcttaatgcatgagatacacttgatt |
32186832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 658 - 713
Target Start/End: Complemental strand, 38260324 - 38260269
Alignment:
| Q |
658 |
tgacacattactatcttgcatgtgatacacttggcttattgtatgagatacacttg |
713 |
Q |
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| T |
38260324 |
tgacacattaccatcttgcatgtgatgcacttggaatattgcatgaaatacacttg |
38260269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 655 - 749
Target Start/End: Complemental strand, 38244037 - 38243943
Alignment:
| Q |
655 |
cattgacacattactatcttgcatgtgatacacttggcttattgtatgagatacacttgatttgttgaatgaataacacttgacttgttgcatgt |
749 |
Q |
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| T |
38244037 |
cattgacacattaccatcttgcatgtgattcacttggatgattgcatgaaaagcacttggatgattgcatgaatgccacttgtcttgttgcatgt |
38243943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 669 - 706
Target Start/End: Original strand, 19407003 - 19407040
Alignment:
| Q |
669 |
tatcttgcatgtgatacacttggcttattgtatgagat |
706 |
Q |
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| T |
19407003 |
tatcttgcatgtgatacacttgtcttattgcatgagat |
19407040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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