View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4969-Insertion-3 (Length: 655)
Name: NF4969-Insertion-3
Description: NF4969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4969-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 55 - 350
Target Start/End: Complemental strand, 47468284 - 47467989
Alignment:
| Q |
55 |
caagaatactttcgcaatgtattacaagaagactttcgctagtttaattcaccatgcacacagaccgcaagtttacatgtaatagacgaaaaagactaat |
154 |
Q |
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| T |
47468284 |
caagaagactttcgcaatgtattacaagaagactttcgctagtttaattcaccatgcacacagacagcaagtttacatgtaatagacgaaaaagactaat |
47468185 |
T |
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| Q |
155 |
atgaattaagagcacgggattgataactcaactaatttgagataagggttaagaaattggaggttgggttcggagtttaagttctaacaaagataaatac |
254 |
Q |
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| T |
47468184 |
atgaattaagagcacgggattgataactcaactaatttgagataagggttaagaaattggaggttcggttcggagtttaagttctaacaaagataaatac |
47468085 |
T |
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| Q |
255 |
tattaacctaacaattaacatggggtattgctaataagtgtcattgtggcactttttaatgaaagcaaaaataagagttttgcgttagaaactaca |
350 |
Q |
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| T |
47468084 |
tattaacctaacaattaacatggggtattgctaacaagtgtcattgtggcacttgttaatgaaagcaaaaataagagttttgctttagaaactaca |
47467989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 47468355 - 47468270
Alignment:
| Q |
8 |
ctaaatttggacaaggagaatgattttacaaaccttataatttgattcaagaatactttcgcaatgtattacaagaagactttcgc |
93 |
Q |
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| T |
47468355 |
ctaaatttggacaaggagaatgattttacaaaccttataatttgattcaagaagactttcgcaatgtattacaagaagactttcgc |
47468270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 562 - 655
Target Start/End: Complemental strand, 47467774 - 47467679
Alignment:
| Q |
562 |
tcaaatttttgttcgatctgtttcctaaaatagaaaagagttgaatttgtgaatagaacaaactgacctgcacgtg--atatgcaaacatccatca |
655 |
Q |
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| T |
47467774 |
tcaattttttgttcgatctgtttcctaaaatagaaaagagttgaatttgtgaatagaacaaactgacctgcacgtgatatatgcaaacatccatca |
47467679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 417 - 472
Target Start/End: Complemental strand, 47467922 - 47467867
Alignment:
| Q |
417 |
ctcttaaccaactttatcggcactctttaacattttccattaatattcattcaatt |
472 |
Q |
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| T |
47467922 |
ctcttaaccaactttatcgacactctttaacattttccattaatattcattcaatt |
47467867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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