View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4969-Insertion-4 (Length: 632)

Name: NF4969-Insertion-4
Description: NF4969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4969-Insertion-4
NF4969-Insertion-4
[»] chr8 (3 HSPs)
chr8 (16-632)||(42990600-42991216)
chr8 (386-580)||(35016245-35016439)
chr8 (12-207)||(35017692-35017887)
[»] chr3 (4 HSPs)
chr3 (378-632)||(38218909-38219163)
chr3 (382-632)||(38214692-38214942)
chr3 (12-209)||(38214309-38214506)
chr3 (12-209)||(38218528-38218725)
[»] chr7 (2 HSPs)
chr7 (60-175)||(37188574-37188689)
chr7 (382-582)||(37188272-37188472)
[»] chr4 (7 HSPs)
chr4 (57-175)||(53494981-53495099)
chr4 (60-175)||(53498939-53499054)
chr4 (60-175)||(53492634-53492749)
chr4 (60-151)||(53502101-53502192)
chr4 (36-180)||(52590708-52590852)
chr4 (382-444)||(53494776-53494838)
chr4 (392-444)||(53501885-53501937)
[»] chr2 (2 HSPs)
chr2 (39-139)||(16942166-16942266)
chr2 (39-139)||(17012831-17012931)


Alignment Details
Target: chr8 (Bit Score: 522; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 16 - 632
Target Start/End: Complemental strand, 42991216 - 42990600
Alignment:
16 ggggcttccaaatgatagagtaagtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgtt 115  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
42991216 ggggcttccagatgatagagtaagtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctgtttcctttgccttgagaaaacacgtt 42991117  T
116 agtgtgaagaatgtaagggtcaccgctaacatttcccaagaactcaaaatcaatttcatcgtgagttggcccttgtgacgacaactgcaccataagcaaa 215  Q
     ||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||    
42991116 tgtgtggagaatgtaaggattaccgctaacatttcccaagaactcaaaatcaatttcgtcgtgagttggcccttgtgatgacaactgcaccataaggaaa 42991017  T
216 atgctagtaaaaacttttgatttcatgaaga-gctatgtatgttaattaaagttgctttcgaaaaagaaacaacgaaggaatataatatataatgtgaag 314  Q
    ||||| |||||| ||||  | |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
42991016 atgctcgtaaaagctttcaacttcatgaagaagctatgtatgttaattaaagttgcttttgaaaaagaaacaacgaaggaatataatatataatgtgaag 42990917  T
315 aagacaagaaaagaatcaaattgtatgagtttgatttgaatgaatttagatggaaaaaagtactacgtacatagtaagcagtgacggttccagcagagtt 414  Q
    ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
42990916 aaggcaagaaaagaatcaaattgtatgagtttgatttgaatgaatt-agatggaaaaaagtactacgtacatagtaagcagtgacggttccagcagagtt 42990818  T
415 tccagcaaccaatttgagttgcatatcaattctaccgaataagtactctttcttggactggaagccagagccggagactttgtcgagagaaagcgaaaga 514  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
42990817 tccagcaaccagtttgagttgcatatcaattctaccgaataagtactctttcttggactggaagccagagccggagactttgtcgagagaaagtgaaaga 42990718  T
515 agctgaccaccgttgaatatcttagcacggtgatcaccccatgttagatcaaaatcttggtagaaatttgcacaacatgtagctatcaaggagctaacta 614  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42990717 agctgaccaccgttgaatgtcttagcacggtgatcgccccatgttagatcaaaatcttggtagaaatttgcacaacatgtagctatcaaggagctaacta 42990618  T
615 tcatagctccaatcagca 632  Q
    ||||||||||||||||||    
42990617 tcatagctccaatcagca 42990600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 386 - 580
Target Start/End: Complemental strand, 35016439 - 35016245
Alignment:
386 tagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaattctaccgaataagtactctttcttggactggaagccagagc 485  Q
    |||||||||||||| || ||||||||||| |||||||| |  || || |||||||||||||| || |||| ||||||| |||| || | |||||||||||    
35016439 tagtaagcagtgacagtgccagcagagttgccagcaacaagcttaagctgcatatcaattctcccaaataggtactctctctttgatttgaagccagagc 35016340  T
486 cggagactttgtcgagagaaagcgaaagaagctgaccaccgttgaatatcttagcacggtgatcaccccatgttagatcaaaatcttggtagaaa 580  Q
    | ||||||||||| || ||||| || ||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
35016339 cagagactttgtcaagggaaagtgatagaagttgaccaccattgaatatcttagcacggttatcaccccatgttagatcaaagtcttggtagaaa 35016245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 35017887 - 35017692
Alignment:
12 tgttggggcttccaaatgatagagtaagtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaaca 111  Q
    |||||||| ||||||||||| |||||||||||||||||  | ||||| |||||||| ||||||||||||||||||||||| ||||| |||||||  || |    
35017887 tgttggggtttccaaatgatggagtaagtgtggaagtttctagtggggtcaaaccataggtagaattgttgttctctattacctttaccttgagtgaaga 35017788  T
112 cgttagtgtgaagaatgtaagggtcaccgctaacatttcccaagaactcaaaatcaatttcatcgtgagttggcccttgtgacgacaactgcacca 207  Q
     ||| ||||||||||| ||||||||||| ||    ||||||||||||||||||||||| ||||| || ||||| ||||| || |||| ||| ||||    
35017787 tgtttgtgtgaagaatataagggtcaccacttgtgtttcccaagaactcaaaatcaatctcatcatgggttggtccttgggatgacagctgtacca 35017692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 5e-70; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 378 - 632
Target Start/End: Original strand, 38218909 - 38219163
Alignment:
378 tacgtacatagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaattctaccgaataagtactctttcttggactggaa 477  Q
    ||||||| ||||||||||| || ||||||||||| ||||||||||| | ||| |||||||||||||||||||| ||||| |||||||||||||| |||||    
38218909 tacgtacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttaagttgcatatcaattctaccaaataaatactctttcttggattggaa 38219008  T
478 gccagagccggagactttgtcgagagaaagcgaaagaagctgaccaccgttgaatatcttagcacggtgatcaccccatgttagatcaaaatcttggtag 577  Q
    ||||||||| ||   ||| || |||||||| || ||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||| |    
38219009 gccagagccagaagttttatcaagagaaagagatagaagttgaccaccattgaatatcttagcacggtggtcaccccaagttagatcaaagtcttggttg 38219108  T
578 aaatttgcacaacatgtagctatcaaggagctaactatcatagctccaatcagca 632  Q
    || || ||| |||||||||||| ||||||||||| ||||||| ||||||||||||    
38219109 aagttagcagaacatgtagctaccaaggagctaattatcataactccaatcagca 38219163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 382 - 632
Target Start/End: Original strand, 38214692 - 38214942
Alignment:
382 tacatagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaattctaccgaataagtactctttcttggactggaagcca 481  Q
    ||||||||||||||| || ||||||||||| ||||||||||| | ||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||    
38214692 tacatagtaagcagtaacagttccagcagaatttccagcaacaagtttaagttgcatatcaattctaccaaataaatactctttcttggattggaagcca 38214791  T
482 gagccggagactttgtcgagagaaagcgaaagaagctgaccaccgttgaatatcttagcacggtgatcaccccatgttagatcaaaatcttggtagaaat 581  Q
    ||||| ||   ||| || |||||||| || ||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||| ||| |    
38214792 gagccagaagttttatcaagagaaagagatagaagttgaccaccattgaatatcttagcacggtggtcaccccaagttagatcaaagtcttggttgaagt 38214891  T
582 ttgcacaacatgtagctatcaaggagctaactatcatagctccaatcagca 632  Q
    | ||| |||||||||||| ||||||||||| ||||||  ||||||||||||    
38214892 tagcagaacatgtagctaccaaggagctaattatcatgactccaatcagca 38214942  T

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Target: chr3; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 38214309 - 38214506
Alignment:
12 tgttggggcttccaaatgatagagtaagtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaaca 111  Q
    ||||| |||||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||||    
38214309 tgttgtggcttccagatgatagagtaagtgtggaagttcttggttgggtcgaaccagaggtagaattgttgttctctgtttcctttgccttgagaaaaca 38214408  T
112 cgttagtgtgaagaatgtaagggtcaccgctaacatttcccaagaactcaaaatcaatttcatcgtgagttggcccttgtgacgacaactgcaccata 209  Q
    |||| ||||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||| ||||| || || ||||| |||||||||||||||    
38214409 cgtttgtgtggagaatgtaaggatcgccactaacatttcctaagaactcaaaatcaatttcatcatgagtcggtccctgtgatgacaactgcaccata 38214506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 38218528 - 38218725
Alignment:
12 tgttggggcttccaaatgatagagtaagtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaaca 111  Q
    ||||| |||||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||||    
38218528 tgttgtggcttccagatgatagagtaagtgtggaagttcttggttgggtcgaaccagaggtagaattgttgttctctgtttcctttgccttgagaaaaca 38218627  T
112 cgttagtgtgaagaatgtaagggtcaccgctaacatttcccaagaactcaaaatcaatttcatcgtgagttggcccttgtgacgacaactgcaccata 209  Q
    |||| ||||| ||||||||||| || || ||||||||||| ||||||||||||||||||||||| ||||| || || ||||| |||||||||||||||    
38218628 cgtttgtgtggagaatgtaaggatcgccactaacatttcctaagaactcaaaatcaatttcatcatgagtcggtccctgtgatgacaactgcaccata 38218725  T

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Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 37188689 - 37188574
Alignment:
60 tcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggtcaccgctaacatttcccaagaact 159  Q
    |||||||| |||||||||||||| ||||| || ||||| |||||   |||||| || |||||||||||||| |||||||| || |  ||||||||||| |    
37188689 tcaaaccataggtagaattgttgctctctgttaccttttccttggctaaacacattggtgtgaagaatgtatgggtcaccactcaagtttcccaagaatt 37188590  T
160 caaaatcaatttcatc 175  Q
    |||| |||||||||||    
37188589 caaagtcaatttcatc 37188574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 582
Target Start/End: Complemental strand, 37188472 - 37188272
Alignment:
382 tacatagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaattctaccgaataagtactctttcttggactggaagcca 481  Q
    |||||| || ||||||||||| ||||||||||| |||| ||| | ||| || |||||||||||| | || || | ||| || || ||||| || || |||    
37188472 tacataataggcagtgacggtgccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggtattcatttttggattgaaaacca 37188373  T
482 gagccggagactttgtcgagagaaagcgaaagaagctgaccaccgttgaatatcttagcacggtgatcaccccatgttagatcaaaatcttggtagaaat 581  Q
    ||||| |||  |||||| ||||| |  | |||||| || |||  ||||| ||| ||||||||   ||| |||||||||| |||||| ||||| || ||||    
37188372 gagccagaggatttgtcaagagacaaagtaagaagttggccattgttgagtattttagcacgtccatccccccatgttatatcaaagtcttgataaaaat 37188273  T
582 t 582  Q
    |    
37188272 t 37188272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 57 - 175
Target Start/End: Complemental strand, 53495099 - 53494981
Alignment:
57 ggatcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggtcaccgctaacatttcccaaga 156  Q
    ||||||||||| || | |||||||||||||||||||||||| |||||| ||||||| || ||||||||| |||| || || || || ||||| || ||||    
53495099 ggatcaaaccatagatggaattgttgttctctatttccttttccttgacaaaacacattggtgtgaagagtgtatggttctccactcacattccctaaga 53495000  T
157 actcaaaatcaatttcatc 175  Q
    | ||||| ||||| |||||    
53494999 attcaaagtcaatctcatc 53494981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 53499054 - 53498939
Alignment:
60 tcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggtcaccgctaacatttcccaagaact 159  Q
    |||||||| ||||| |||||||| ||||| || |||||||||||   |||||| || |||||||| |||||||| ||||| || | |||||||||||| |    
53499054 tcaaaccaaaggtaaaattgttgctctctgttacctttgccttggctaaacacattggtgtgaaggatgtaaggatcaccactcaaatttcccaagaatt 53498955  T
160 caaaatcaatttcatc 175  Q
    |||| ||||| |||||    
53498954 caaagtcaatctcatc 53498939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 53492749 - 53492634
Alignment:
60 tcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggtcaccgctaacatttcccaagaact 159  Q
    |||||||| ||||| | |||||| ||||| |  |||||||||||   |||||| || || ||||| |||||||| ||||| || | |||||||||||| |    
53492749 tcaaaccaaaggtaaatttgttgctctctgtcacctttgccttggctaaacacattggtatgaaggatgtaaggatcaccactcaaatttcccaagaatt 53492650  T
160 caaaatcaatttcatc 175  Q
    |||| |||||||||||    
53492649 caaagtcaatttcatc 53492634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 151
Target Start/End: Complemental strand, 53502192 - 53502101
Alignment:
60 tcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggtcaccgctaacatttcc 151  Q
    |||||||| || |||||||||||||| || |||||||||||||||   || || ||||||||||| ||||| || ||||| || ||||||||    
53502192 tcaaaccatagatagaattgttgttccctgtttcctttgccttgactgaaaacattagtgtgaaggatgtatggttcaccacttacatttcc 53502101  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 180
Target Start/End: Complemental strand, 52590852 - 52590708
Alignment:
36 taagtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggt 135  Q
    |||||||| |||| ||||||||| || ||||| |  ||||||||||||||| |||||||||| ||||| | | | | ||| || |||| ||| ||||| |    
52590852 taagtgtgaaagtccttggtggggtcgaaccacaaatagaattgttgttctttatttcctttcccttgtgcataaatgtttgtatgaacaatataaggat 52590753  T
136 caccgctaacatttcccaagaactcaaaatcaatttcatcgtgag 180  Q
    |||| || |  || ||||| || |||||||| |||||||| ||||    
52590752 caccacttaagttacccaaaaattcaaaatctatttcatcatgag 52590708  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 444
Target Start/End: Complemental strand, 53494838 - 53494776
Alignment:
382 tacatagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaat 444  Q
    |||||||||||||||||| ||||| |||||||||||||  || |  ||||| |||||||||||    
53494838 tacatagtaagcagtgaccgttcctgcagagtttccaggtacaagcttgagctgcatatcaat 53494776  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 53501937 - 53501885
Alignment:
392 gcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaat 444  Q
    |||||||| || ||||||||||||||||  || | ||||||||||||||||||    
53501937 gcagtgacagtgccagcagagtttccagggacaagtttgagttgcatatcaat 53501885  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 16942266 - 16942166
Alignment:
39 gtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggtcac 138  Q
    |||||||||| |||||| || |||||||| |  ||||||||||| |||||||| ||||| ||||| |  || ||||| || |||||||| ||||| ||||    
16942266 gtgtggaagtccttggtagggtcaaaccacaaatagaattgttgctctctattccctttcccttgtgtgaatacgtttgtatgaagaatataaggatcac 16942167  T
139 c 139  Q
    |    
16942166 c 16942166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 17012931 - 17012831
Alignment:
39 gtgtggaagttcttggtgggatcaaaccagaggtagaattgttgttctctatttcctttgccttgagaaaacacgttagtgtgaagaatgtaagggtcac 138  Q
    |||||||||| |||||| || |||||||| |  ||||||||||| |||||||| ||||| ||||| |  || ||||| || |||||||| ||||| ||||    
17012931 gtgtggaagtccttggtagggtcaaaccacaaatagaattgttgctctctattccctttcccttgtgtgaatacgtttgtatgaagaatataaggatcac 17012832  T
139 c 139  Q
    |    
17012831 c 17012831  T

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