View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4969-Insertion-5 (Length: 253)
Name: NF4969-Insertion-5
Description: NF4969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4969-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 32117053 - 32117226
Alignment:
| Q |
8 |
atatttgcttctcattccatcttcttagaagaagaaactctcacaggatnnnnnnnnnttagaactctatccgtcgctttattctcatcaaaaagcttaa |
107 |
Q |
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| T |
32117053 |
atatttgcttctcattccatcttcttagaagaagaaactctcacaggataaaaaaa--ttagaactctatccgtcgctttattctcatcaaaaagcttaa |
32117150 |
T |
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| Q |
108 |
tgtctagaaaaatatcaaggttataacacacattcaaatataaaattaagacattctagagcatcaaatcaattaa |
183 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32117151 |
tgtctagaaaaatatcaaggttataacatacattcaaatataaaattaagacattctagagcatcaaatcaattaa |
32117226 |
T |
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Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 32118180 - 32118236
Alignment:
| Q |
197 |
atatatatagttttattaattatcccttcttattgctactagttaagctagttttaa |
253 |
Q |
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| T |
32118180 |
atatatatagttttattaattatcccttcttattgctactagttaagctagttttaa |
32118236 |
T |
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