View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4969_high_2 (Length: 478)
Name: NF4969_high_2
Description: NF4969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4969_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 21 - 319
Target Start/End: Original strand, 9230576 - 9230878
Alignment:
| Q |
21 |
tgaagtatggaattacttc----ttaccaaacaaaagctatgaaattaagtatacatttcattaaaccgattttaatttgtagtgtagtgtttatgatca |
116 |
Q |
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| T |
9230576 |
tgaagtatggaattacttccttcttaccaaacaaaagctatgaaattaagtatacatttcaataaaccgattttaatttgtagtgtagtgtttatgatca |
9230675 |
T |
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| Q |
117 |
cgattttgacagaattaagtgcattaataatgagaagaataagcaagcaacattgaatgataatggtctgacgtggagcaccaaaggggctggaacaggg |
216 |
Q |
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| T |
9230676 |
cgattttgacagaattaagtgcattaataatgagaagaatatgtaagcaacattgaatgataatggtctgacgtggagcaccaaaggggctggaacaggg |
9230775 |
T |
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| Q |
217 |
cctatgtcacgagtgtacgacgtggaaagcatagccatgtgggaccacgtggattttttcatcttttgcaaaaggaagggttcccaatgctatgtgtaga |
316 |
Q |
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| T |
9230776 |
cctatgtcacgagtgtacgacgtggaaagcatagccatgtgggaccacgtggattttttcatcttttgcaaaaggaagggttcccaatgctatgtataga |
9230875 |
T |
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| Q |
317 |
cta |
319 |
Q |
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||| |
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| T |
9230876 |
cta |
9230878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 410 - 467
Target Start/End: Original strand, 9230968 - 9231025
Alignment:
| Q |
410 |
ggactgtaatgatgttaattgatgaaagggtccctcattaagcaccggcctagttcat |
467 |
Q |
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| T |
9230968 |
ggactgtaatgatgttaattgatgaaagggtccctcattaagcaccggcctagttcat |
9231025 |
T |
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