View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4969_low_1 (Length: 516)

Name: NF4969_low_1
Description: NF4969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4969_low_1
NF4969_low_1
[»] chr4 (39 HSPs)
chr4 (18-330)||(13493303-13493618)
chr4 (337-505)||(13492709-13492881)
chr4 (248-321)||(1871317-1871390)
chr4 (250-396)||(12153118-12153266)
chr4 (245-324)||(23474148-23474227)
chr4 (243-312)||(33841761-33841830)
chr4 (246-340)||(56564735-56564833)
chr4 (245-317)||(50483515-50483587)
chr4 (250-324)||(5416429-5416503)
chr4 (250-324)||(23610679-23610754)
chr4 (245-324)||(48914477-48914556)
chr4 (250-324)||(56558316-56558391)
chr4 (282-350)||(5361437-5361505)
chr4 (241-321)||(36532665-36532745)
chr4 (250-324)||(3952133-3952208)
chr4 (250-324)||(19901881-19901956)
chr4 (250-323)||(33247093-33247167)
chr4 (250-321)||(34778461-34778533)
chr4 (282-350)||(47834575-47834643)
chr4 (250-324)||(18207003-18207078)
chr4 (259-314)||(28405444-28405499)
chr4 (255-324)||(30567938-30568008)
chr4 (254-300)||(31726275-31726321)
chr4 (250-331)||(52018793-52018875)
chr4 (250-324)||(56453784-56453858)
chr4 (259-324)||(36003219-36003284)
chr4 (271-319)||(21721248-21721296)
chr4 (248-320)||(42844149-42844221)
chr4 (251-306)||(5815267-5815322)
chr4 (250-304)||(12312438-12312493)
chr4 (250-324)||(24073653-24073728)
chr4 (250-324)||(38079683-38079758)
chr4 (242-304)||(709985-710047)
chr4 (236-324)||(47922315-47922405)
chr4 (251-296)||(3503397-3503442)
chr4 (317-396)||(23119571-23119647)
chr4 (243-296)||(51611159-51611212)
chr4 (254-314)||(23119291-23119350)
chr4 (248-280)||(49811508-49811540)
[»] chr7 (32 HSPs)
chr7 (251-324)||(989166-989239)
chr7 (250-324)||(4888504-4888579)
chr7 (254-316)||(39855781-39855843)
chr7 (254-330)||(7362599-7362676)
chr7 (250-321)||(44648004-44648076)
chr7 (250-312)||(47271111-47271173)
chr7 (250-324)||(9559017-9559092)
chr7 (284-323)||(29844329-29844368)
chr7 (288-362)||(18064555-18064628)
chr7 (247-317)||(30153143-30153213)
chr7 (271-324)||(32915993-32916046)
chr7 (250-318)||(5463867-5463935)
chr7 (250-321)||(16366558-16366630)
chr7 (326-424)||(33608934-33609036)
chr7 (250-321)||(45260390-45260462)
chr7 (245-320)||(7712326-7712401)
chr7 (250-316)||(21151197-21151264)
chr7 (250-323)||(18198294-18198368)
chr7 (251-324)||(29631085-29631156)
chr7 (261-347)||(36113960-36114045)
chr7 (260-310)||(43183031-43183081)
chr7 (241-317)||(1193958-1194034)
chr7 (250-324)||(33450543-33450619)
chr7 (255-311)||(33608845-33608901)
chr7 (250-313)||(47226039-47226103)
chr7 (251-339)||(47270787-47270875)
chr7 (254-324)||(12139364-12139435)
chr7 (251-314)||(40023221-40023284)
chr7 (250-304)||(44390835-44390889)
chr7 (271-324)||(7373904-7373957)
chr7 (243-324)||(46802288-46802369)
chr7 (288-324)||(25084730-25084766)
[»] chr5 (26 HSPs)
chr5 (245-324)||(29341032-29341111)
chr5 (243-313)||(9460592-9460662)
chr5 (250-324)||(35660572-35660647)
chr5 (250-324)||(37266768-37266843)
chr5 (250-320)||(18653402-18653472)
chr5 (245-318)||(31653078-31653151)
chr5 (250-324)||(18625384-18625459)
chr5 (245-322)||(31546525-31546602)
chr5 (250-321)||(11775833-11775905)
chr5 (250-316)||(13032163-13032230)
chr5 (251-324)||(4895699-4895773)
chr5 (252-324)||(39902452-39902525)
chr5 (250-321)||(34827232-34827304)
chr5 (250-321)||(43309148-43309220)
chr5 (250-321)||(10361978-10362049)
chr5 (286-321)||(11999599-11999634)
chr5 (250-324)||(32129580-32129655)
chr5 (282-340)||(1475651-1475709)
chr5 (271-313)||(25941195-25941237)
chr5 (250-316)||(27428845-27428911)
chr5 (317-398)||(34827138-34827219)
chr5 (369-410)||(25256138-25256179)
chr5 (369-410)||(25319927-25319968)
chr5 (266-302)||(1422472-1422508)
chr5 (285-313)||(2984389-2984417)
chr5 (271-315)||(11357695-11357739)
[»] chr2 (33 HSPs)
chr2 (247-320)||(36929757-36929830)
chr2 (250-315)||(22061433-22061498)
chr2 (245-320)||(19908821-19908895)
chr2 (250-316)||(2063399-2063465)
chr2 (248-317)||(30857640-30857709)
chr2 (238-321)||(4446847-4446931)
chr2 (243-299)||(36758670-36758726)
chr2 (250-324)||(13238718-13238793)
chr2 (271-322)||(19905920-19905971)
chr2 (248-350)||(30217484-30217587)
chr2 (245-323)||(38397119-38397197)
chr2 (250-339)||(45625042-45625132)
chr2 (245-321)||(15709808-15709884)
chr2 (248-320)||(31618730-31618801)
chr2 (250-321)||(35316865-35316937)
chr2 (255-317)||(35315257-35315319)
chr2 (285-350)||(3354779-3354844)
chr2 (243-300)||(8007768-8007825)
chr2 (284-324)||(30709147-30709187)
chr2 (243-323)||(34511982-34512062)
chr2 (250-324)||(23259450-23259525)
chr2 (245-319)||(15722276-15722350)
chr2 (241-311)||(43077944-43078014)
chr2 (240-317)||(26800368-26800445)
chr2 (250-319)||(28853091-28853160)
chr2 (235-324)||(35315539-35315628)
chr2 (277-313)||(30709230-30709266)
chr2 (250-316)||(11864914-11864981)
chr2 (250-324)||(28564929-28565004)
chr2 (293-340)||(39465779-39465826)
chr2 (271-324)||(21454480-21454532)
chr2 (245-306)||(36758820-36758881)
chr2 (250-324)||(40640706-40640782)
[»] chr6 (19 HSPs)
chr6 (250-340)||(1516170-1516260)
chr6 (250-340)||(1518259-1518349)
chr6 (250-396)||(32737821-32737969)
chr6 (245-321)||(17828527-17828603)
chr6 (251-324)||(7215816-7215890)
chr6 (248-321)||(2800572-2800646)
chr6 (255-346)||(28696624-28696717)
chr6 (292-409)||(13324859-13324973)
chr6 (250-324)||(4804485-4804560)
chr6 (292-350)||(9954332-9954391)
chr6 (251-306)||(29229149-29229204)
chr6 (255-306)||(30460879-30460930)
chr6 (250-340)||(1515505-1515595)
chr6 (243-350)||(10203529-10203637)
chr6 (245-324)||(12412674-12412754)
chr6 (250-324)||(7162121-7162196)
chr6 (250-324)||(13089712-13089787)
chr6 (250-324)||(227526-227602)
chr6 (250-316)||(17944207-17944274)
[»] chr3 (31 HSPs)
chr3 (259-321)||(44637982-44638044)
chr3 (248-317)||(10474400-10474469)
chr3 (245-321)||(33632862-33632938)
chr3 (240-319)||(29586378-29586457)
chr3 (243-323)||(51982542-51982622)
chr3 (246-324)||(30235414-30235492)
chr3 (250-324)||(43719910-43719985)
chr3 (250-323)||(40851812-40851886)
chr3 (273-321)||(25285824-25285872)
chr3 (282-350)||(27959101-27959169)
chr3 (250-321)||(52859268-52859340)
chr3 (239-350)||(3009233-3009343)
chr3 (250-324)||(19830394-19830469)
chr3 (250-316)||(24754702-24754769)
chr3 (250-316)||(24763699-24763766)
chr3 (250-324)||(27033688-27033763)
chr3 (251-316)||(2230028-2230094)
chr3 (243-300)||(2509131-2509188)
chr3 (259-311)||(566746-566798)
chr3 (254-324)||(34373868-34373939)
chr3 (251-306)||(37323937-37323992)
chr3 (251-324)||(46167430-46167504)
chr3 (260-321)||(550790-550851)
chr3 (252-321)||(36354229-36354298)
chr3 (245-310)||(50462639-50462704)
chr3 (304-365)||(50463345-50463406)
chr3 (250-314)||(28229366-28229430)
chr3 (245-309)||(28792001-28792065)
chr3 (250-324)||(48084856-48084932)
chr3 (261-340)||(52859375-52859451)
chr3 (284-324)||(54911691-54911731)
[»] chr1 (20 HSPs)
chr1 (243-306)||(44239250-44239313)
chr1 (255-324)||(39426247-39426317)
chr1 (18-113)||(24848650-24848753)
chr1 (250-323)||(50484424-50484498)
chr1 (248-324)||(26860012-26860088)
chr1 (237-321)||(32618841-32618924)
chr1 (250-316)||(12380840-12380907)
chr1 (250-316)||(12384907-12384974)
chr1 (250-340)||(45978026-45978117)
chr1 (250-324)||(50294026-50294101)
chr1 (248-321)||(32887742-32887815)
chr1 (251-321)||(35534748-35534817)
chr1 (246-317)||(5047343-5047412)
chr1 (243-311)||(47296096-47296164)
chr1 (250-324)||(12151804-12151879)
chr1 (250-316)||(48327117-48327184)
chr1 (250-330)||(40328309-40328387)
chr1 (308-414)||(18899514-18899619)
chr1 (250-306)||(18976267-18976324)
chr1 (251-304)||(49384627-49384680)
[»] scaffold0062 (2 HSPs)
scaffold0062 (245-321)||(58720-58796)
scaffold0062 (245-319)||(70833-70907)
[»] chr8 (17 HSPs)
chr8 (245-321)||(18689531-18689607)
chr8 (250-324)||(28069756-28069831)
chr8 (250-316)||(37966407-37966473)
chr8 (248-321)||(42761753-42761827)
chr8 (253-324)||(30426635-30426707)
chr8 (236-311)||(44517613-44517688)
chr8 (276-318)||(17520425-17520467)
chr8 (250-316)||(40695211-40695277)
chr8 (319-394)||(10652667-10652744)
chr8 (250-304)||(36991413-36991468)
chr8 (246-321)||(42338006-42338081)
chr8 (250-292)||(8412685-8412727)
chr8 (282-336)||(12177577-12177631)
chr8 (282-336)||(12422005-12422059)
chr8 (250-304)||(20169125-20169179)
chr8 (251-324)||(41511299-41511373)
chr8 (357-401)||(21486607-21486652)
[»] scaffold0012 (1 HSPs)
scaffold0012 (250-324)||(208100-208175)
[»] scaffold0008 (1 HSPs)
scaffold0008 (250-324)||(9164-9239)
[»] scaffold0126 (1 HSPs)
scaffold0126 (250-321)||(22406-22477)
[»] scaffold0007 (1 HSPs)
scaffold0007 (243-294)||(246297-246348)
[»] scaffold0006 (1 HSPs)
scaffold0006 (250-340)||(73820-73911)
[»] scaffold0456 (1 HSPs)
scaffold0456 (250-396)||(13643-13792)
[»] scaffold0035 (1 HSPs)
scaffold0035 (250-324)||(16360-16435)
[»] scaffold0250 (1 HSPs)
scaffold0250 (282-324)||(7184-7226)
[»] scaffold0121 (1 HSPs)
scaffold0121 (245-314)||(29528-29597)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 13493618 - 13493303
Alignment:
Q  18 gattcttctaa-actcaactctgagaatccgatagctgattgtttatagtgataaaaagtcccactaaaccaacctttgtattttaatcatcaatatata 116  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13493618 gattcttctaatactcaactctgagaatccgatagctgattgtttacagtgataaaaagtcccactaaaccaacctttgtattttaatcatcaatatata 13493519  T
Q  117 tagctctaagattggttatttttacaaatcattcaatctatcatcttttcatttgttttccaaccatactaatttctcacacgtccaacgagtttcagat 216  Q
    | |||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||  |||||||||||||||||||  |||| ||||||||    
T  13493518 tggctccaagattggttatttttacaaatcattcaatctatcatcttttggtttgttttccaactctactaatttctcacacgtcttacgaatttcagat 13493419  T
Q  217 tatataatacaaaacacgttaaaaacgagtaaggatcctctccatttgacaaattaaatggagtatgcaattt--ggagagagatagacacataaaatag 314  Q
    ||||||||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||||||||||||||   ||||||||||||||| ||||||||    
T  13493418 tatataatacaaaacactttaaaaatgagtaaggatcctctctatttgacaaaataaatggagtatgcaatttagagagagagatagacacgtaaaatag 13493319  T
Q  315 atagtgggtcgcacca 330  Q
    ||||||| || |||||    
T  13493318 atagtggatcccacca 13493303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 337 - 505
Target Start/End: Complemental strand, 13492881 - 13492709
Alignment:
Q  337 attaatttatacttattttcaaaaaatttgtgt-tttatctcttcaaatagaagaaatggaaagaatgataaataa---ggatcttaactcgttaaaaac 432  Q
    |||||||||||||||||||||||||| || ||| ||||||| ||||||| ||||||||| |||||||||||||| |   |||||||||||||||||||||    
T  13492881 attaatttatacttattttcaaaaaaattatgtctttatcttttcaaatggaagaaatgaaaagaatgataaattaagaggatcttaactcgttaaaaac 13492782  T
Q  433 atacttcattttttcagatttcgtaatccaaaacaagtttggaggatatgagaaaagaaattcacctcttcat 505  Q
    ||||| ||||| ||| ||||||||||||||||  | ||||||||||||||| ||||||||||||| |||||||    
T  13492781 atactacatttcttcggatttcgtaatccaaagtaggtttggaggatatgaaaaaagaaattcacatcttcat 13492709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 248 - 321
Target Start/End: Complemental strand, 1871390 - 1871317
Alignment:
Q  248 aggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgg 321  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| | || |||||||||||    
T  1871390 aggatcctctcaatttgacaaaataaatggagtatgcaatttggagagagatagacaaaaaatatagatagtgg 1871317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 250 - 396
Target Start/End: Complemental strand, 12153266 - 12153118
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtcgcaccatcattaattaatttatac 348  Q
    ||||||||||||||| |||| |||||||||| | |||| ||||||||||||||||||| ||| ||||| ||||||| |||||||||||||||  || |||    
T  12153266 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaattagatggtgggtcccaccatcattaattatattttac 12153167  T
Q  349 ttattttcaaaaaatt-tgtgt-tttatctcttcaaatagaagaaatgga 396  Q
    || ||||||| |  || ||||| ||||||||| ||||| |||||||||||    
T  12153166 tt-ttttcaagattttatgtgtctttatctctccaaattgaagaaatgga 12153118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 324
Target Start/End: Complemental strand, 23474227 - 23474148
Alignment:
Q  245 gtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||| ||||||||||||||  || | ||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  23474227 gtaaagatcctctccatttagcataataaatggagtatgcaatttggggagagatagacacataaaatagatggtgggtc 23474148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 243 - 312
Target Start/End: Original strand, 33841761 - 33841830
Alignment:
Q  243 gagtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaat 312  Q
    ||||||||||||||||||||||  ||| |||||||||||| ||||||||||||||||||||||| |||||    
T  33841761 gagtaaggatcctctccatttgttaaagtaaatggagtatacaatttggagagagatagacacaaaaaat 33841830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 246 - 340
Target Start/End: Complemental strand, 56564833 - 56564735
Alignment:
Q  246 taaggatcctctccatttgacaaattaaatggagtatgcaatttggagagag----atagacacataaaatagatagtgggtcgcaccatcattaatta 340  Q
    |||||||| |||||||||  |||| |||||| ||||||||||||||||||||    |||||||||||||||| ||||| |||| |||||||||||||||    
T  56564833 taaggatcatctccatttagcaaaataaatgtagtatgcaatttggagagagggagatagacacataaaatatatagtaggtcccaccatcattaatta 56564735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 50483515 - 50483587
Alignment:
Q  245 gtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagata 317  Q
    ||||||||| |||||||||  |||| ||||| |||||||||||||||||| |||||||||| |||||||||||    
T  50483515 gtaaggatcatctccatttagcaaaataaattgagtatgcaatttggagacagatagacacgtaaaatagata 50483587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 5416429 - 5416503
Alignment:
Q  250 gatcctctccatttgacaaattaaatggag-tatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||| ||||||||| |||||||    
T  5416429 gatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacaca-aaaatagattgtgggtc 5416503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 23610754 - 23610679
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||||||||||||||| ||| |||||||||| | |||| ||||||||||||||||||| ||||||||| |||||||    
T  23610754 gatcctctccatttgataaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtc 23610679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 245 - 324
Target Start/End: Original strand, 48914477 - 48914556
Alignment:
Q  245 gtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||| |||| |||||||||  |||| ||||||||| ||||||||| ||||||||| |||||||||||||||| |||||||    
T  48914477 gtaaagatcttctccatttagcaaaataaatggagaatgcaatttagagagagatcgacacataaaatagattgtgggtc 48914556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 56558391 - 56558316
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||||||||| |||| |||||||||| | |||| ||||||||||||||||||| ||||||||| |||||||    
T  56558391 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtc 56558316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 5361505 - 5361437
Alignment:
Q  282 tgcaatttggagagagatagacacataaaatagatagtgggtcgcaccatcattaattaatttatactt 350  Q
    ||||||||||||||||||||||||| ||||||  | ||||||| ||||||||||||||| ||| |||||    
T  5361505 tgcaatttggagagagatagacacaaaaaataagtggtgggtcccaccatcattaattattttttactt 5361437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 241 - 321
Target Start/End: Complemental strand, 36532745 - 36532665
Alignment:
Q  241 acgagtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgg 321  Q
    |||||| | |||||||||||| ||| ||| ||||||||||   |||||| ||||||||||||||||||||||| |||||||    
T  36532745 acgagttaagatcctctccatctgataaaataaatggagttcacaatttagagagagatagacacataaaataaatagtgg 36532665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 3952133 - 3952208
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatg-caatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||||||||| |||| |||||||||| || ||| ||||||||||||||||| | ||||||||| |||||||    
T  3952133 gatcctctccatttggcaaaataaatggagtttggcaagttggagagagatagacaaaaaaaatagatggtgggtc 3952208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 19901881 - 19901956
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||||||||||||||  ||| |||||||||| | |||| ||||||||||||||||||| ||||||||| |||||||    
T  19901881 gatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtc 19901956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 250 - 323
Target Start/End: Original strand, 33247093 - 33247167
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggt 323  Q
    ||||||||||||||| |||| |||||||||| | |||| |||||||||||||||||||  |||||||| ||||||    
T  33247093 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggt 33247167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 321
Target Start/End: Complemental strand, 34778533 - 34778461
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgg 321  Q
    ||||||||||||||| |||| |||||||||| | |||| ||| ||||||||||||||| ||||||||| ||||    
T  34778533 gatcctctccatttggcaaaataaatggagttttgcaagttgaagagagatagacacaaaaaatagatggtgg 34778461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 47834643 - 47834575
Alignment:
Q  282 tgcaatttggagagagatagacacataaaatagatagtgggtcgcaccatcattaattaatttatactt 350  Q
    |||||||||||||||||||| |||| ||||||  | ||||||| ||||||||||||||| ||| |||||    
T  47834643 tgcaatttggagagagataggcacaaaaaataagtggtgggtcccaccatcattaattattttttactt 47834575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 18207003 - 18207078
Alignment:
Q  250 gatcctctccatttgacaaattaaatggag-tatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||||||||||||||||||| |||||| || | ||||| || |||||||||||||| | ||||||||| |||||||    
T  18207003 gatcctctccatttgacaaaataaatgtagttttgcaagttagagagagatagacaaaaaaaatagatggtgggtc 18207078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 28405499 - 28405444
Alignment:
Q  259 catttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatag 314  Q
    ||||| ||||| ||||| |||||||||||||  |||||||||||||||||||||||    
T  28405499 catttaacaaaataaatagagtatgcaatttcaagagagatagacacataaaatag 28405444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 30568008 - 30567938
Alignment:
Q  255 tctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||||||||| |||| |||||||||| | |||| ||| ||||||||||||||| ||||||||| |||||||    
T  30568008 tctccatttggcaaaataaatggagttttgcaagttgaagagagatagacacaaaaaatagatggtgggtc 30567938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 31726321 - 31726275
Alignment:
Q  254 ctctccatttgacaaattaaatggagtatgcaatttggagagagata 300  Q
    ||||||||||| |||| ||||| ||||||||||||||||||||||||    
T  31726321 ctctccatttgtcaaaataaatagagtatgcaatttggagagagata 31726275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 331
Target Start/End: Complemental strand, 52018875 - 52018793
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtcgcaccat 331  Q
    ||||||||||||||  |||| |||||||||| | |||| ||||||||||||||| ||| |||||| ||||||| || ||||||    
T  52018875 gatcctctccatttagcaaaataaatggagttttgcaagttggagagagatagatacaaaaaataaatagtggatcccaccat 52018793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 56453784 - 56453858
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||||||||    || ||||||||  |||||||||||||||||||||||||| ||||||| | |||||||    
T  56453784 gatcctctccatttatagaaataaatggaagatgcaatttggagagagatagacacaaaaaataggtggtgggtc 56453858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 36003219 - 36003284
Alignment:
Q  259 catttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||||| |||| |||||| ||||||||||||||||||||||| | ||| |||||| ||| ||||||    
T  36003219 catttgtcaaaataaatgaagtatgcaatttggagagagataaatacaaaaaataaatattgggtc 36003284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 21721296 - 21721248
Alignment:
Q  271 taaatggagtatgcaatttggagagagatagacacataaaatagatagt 319  Q
    |||||||||||||| |||| |||||| ||| ||||||||||||||||||    
T  21721296 taaatggagtatgctatttagagagaaataaacacataaaatagatagt 21721248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 320
Target Start/End: Original strand, 42844149 - 42844221
Alignment:
Q  248 aggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtg 320  Q
    |||||||||||||| | | ||| ||||| ||||   ||||||||||| |||||||||||||||||||| ||||    
T  42844149 aggatcctctccatattataaaataaatagagttaacaatttggagatagatagacacataaaatagagagtg 42844221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 306
Target Start/End: Original strand, 5815267 - 5815322
Alignment:
Q  251 atcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacaca 306  Q
    ||||||||||||||| ||| |||||||||||   ||||| ||||||||||||||||    
T  5815267 atcctctccatttgataaaataaatggagtacaaaattttgagagagatagacaca 5815322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 12312438 - 12312493
Alignment:
Q  250 gatcctctccatttgacaaattaaatggag-tatgcaatttggagagagatagaca 304  Q
    ||||||||||||||| |||| ||||||||| | ||||| |||||||||||||||||    
T  12312438 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagaca 12312493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 24073728 - 24073653
Alignment:
Q  250 gatcctctccatttgacaaattaaatggag-tatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||| ||||||| |||| ||||||||| | || || |||||||||||||||||||  |||||||| |||||||    
T  24073728 gatcctccccatttggcaaaataaatggagatttgtaagttggagagagatagacacaacaaatagatggtgggtc 24073653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 38079683 - 38079758
Alignment:
Q  250 gatcctctccatttgacaaattaaatggag-tatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||||||||||||| ||||| ||||||||| | ||| | || ||||||||||||||||  |||||||| |||||||    
T  38079683 gatcctctccatttaacaaaataaatggagttttgctagtttgagagagatagacacaagaaatagatggtgggtc 38079758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 709985 - 710047
Alignment:
Q  242 cgagtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagaca 304  Q
    ||||||| |||| ||| |||||| ||||||||||||||||| ||||||  | |||||||||||    
T  709985 cgagtaaagatcatcttcatttgtcaaattaaatggagtatacaatttaaaaagagatagaca 710047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 324
Target Start/End: Original strand, 47922315 - 47922405
Alignment:
Q  236 taaaaacgagtaaggatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataa-aatagatagtgggtc 324  Q
    |||| |||||| | |||||||||||||||  ||| ||||| |||| | |||||||||||||| ||||||||| || ||||||| |||||||    
T  47922315 taaagacgagttaagatcctctccatttgctaaaataaattgagttttgcaatttggagagatatagacacaaaagaatagatggtgggtc 47922405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 3503397 - 3503442
Alignment:
Q  251 atcctctccatttgacaaattaaatggagtatgcaatttggagaga 296  Q
    |||||||||||||| || |||||||||||||| |||||| ||||||    
T  3503397 atcctctccatttgtcatattaaatggagtatacaatttagagaga 3503442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 396
Target Start/End: Original strand, 23119571 - 23119647
Alignment:
Q  317 agtgggtcgcaccatcattaattaatttatacttattttcaaaaaatttgtgttttatctcttcaaatagaagaaatgga 396  Q
    |||||||| |||||| |||||||||||||  ||| |||| ||||||| |   |||||||||| ||||| |||||||||||    
T  23119571 agtgggtcccaccataattaattaatttagtctttttttaaaaaaatgt---ttttatctctccaaatggaagaaatgga 23119647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 296
Target Start/End: Complemental strand, 51611212 - 51611159
Alignment:
Q  243 gagtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagaga 296  Q
    |||||| |||| ||| ||||||  |||||||||||||||| |||||||||||||    
T  51611212 gagtaaagatcatcttcatttgttaaattaaatggagtatacaatttggagaga 51611159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 23119291 - 23119350
Alignment:
Q  254 ctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatag 314  Q
    ||||||||||||||||  |||||||  || ||||||||||||||||| ||||| |||||||    
T  23119291 ctctccatttgacaaaa-aaatggatgatacaatttggagagagataaacacaaaaaatag 23119350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 49811540 - 49811508
Alignment:
Q  248 aggatcctctccatttgacaaattaaatggagt 280  Q
    |||||||||||||||||||||| ||||||||||    
T  49811540 aggatcctctccatttgacaaaataaatggagt 49811508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 989239 - 989166
Alignment:
Q  251 atcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||    
T  989239 atcctctccatttgacaaattaaatggagtttgcaatttggagagagatagacacaaaaaatatatagtgggtc 989166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 4888579 - 4888504
Alignment:
Q  250 gatcctctccatttgacaaattaaatggag-tatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||| |||||||||||||||||    
T  4888579 gatcctctccatttgacaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagatagtgggtc 4888504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 39855781 - 39855843
Alignment:
Q  254 ctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagat 316  Q
    |||| |||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||    
T  39855781 ctcttcatttgacaaattaaatggagtttgtaatttggagagagatagacacataaaaaagat 39855843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 254 - 330
Target Start/End: Complemental strand, 7362676 - 7362599
Alignment:
Q  254 ctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtcgcacca 330  Q
    |||||||||||||||| |||||||||| | |||| ||||||||||||||||||| ||||||||| |||||||| ||||    
T  7362676 ctctccatttgacaaaataaatggagttttgcaaattggagagagatagacacaaaaaatagatggtgggtcgtacca 7362599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 321
Target Start/End: Complemental strand, 44648076 - 44648004
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgg 321  Q
    |||||||||||||||||||| |||||||||| | |||| ||||||||||||||||||| ||||||||| ||||    
T  44648076 gatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgg 44648004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 250 - 312
Target Start/End: Original strand, 47271111 - 47271173
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaat 312  Q
    ||||||||||||||  |||| |||||||||| ||||||||||||||||||||||||| |||||    
T  47271111 gatcctctccatttagcaaaataaatggagtttgcaatttggagagagatagacacaaaaaat 47271173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 9559017 - 9559092
Alignment:
Q  250 gatcctctccatttgacaaattaaatggag-tatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||||||||| |||| ||||||||| | ||||| ||||||||||||||| ||| ||||||||| |||||||    
T  9559017 gatcctctccatttggcaaaataaatggagatttgcaagttggagagagatagatacaaaaaatagatggtgggtc 9559092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 323
Target Start/End: Complemental strand, 29844368 - 29844329
Alignment:
Q  284 caatttggagagagatagacacataaaatagatagtgggt 323  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29844368 caatttggagagagatagacacataaaatagatagtgggt 29844329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 288 - 362
Target Start/End: Complemental strand, 18064628 - 18064555
Alignment:
Q  288 ttggagagagatagacacataaaatagatagtgggtcgcaccatcattaattaatttatacttattttcaaaaaa 362  Q
    |||||||||||||||||||||||||||| |||| |||  || ||||||||||| ||| ||||| |||||||||||    
T  18064628 ttggagagagatagacacataaaatagacagtgagtcctacaatcattaattattttttactt-ttttcaaaaaa 18064555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 247 - 317
Target Start/End: Original strand, 30153143 - 30153213
Alignment:
Q  247 aaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagata 317  Q
    ||||||||||||||||| |||||  ||||||| ||||||||||| |||||||||||| |||| ||| ||||    
T  30153143 aaggatcctctccatttaacaaaacaaatggaatatgcaatttgaagagagatagacgcatataattgata 30153213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 32916046 - 32915993
Alignment:
Q  271 taaatggagtatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||| |||||||||| ||||||||||||||| |||||| ||||||||||    
T  32916046 taaatggaggatgcaatttgaagagagatagacacaaaaaataaatagtgggtc 32915993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 5463867 - 5463935
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatag 318  Q
    |||||||||||||||| | | |||||  ||||| ||||||||||||| ||| |||||||||||||||||    
T  5463867 gatcctctccatttgatataataaatatagtatacaatttggagagatataaacacataaaatagatag 5463935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 321
Target Start/End: Complemental strand, 16366630 - 16366558
Alignment:
Q  250 gatcctctccatttgacaaattaaatggag-tatgcaatttggagagagatagacacataaaatagatagtgg 321  Q
    |||||||||||||||||||| ||||||||| | ||||| ||||||||||||||||| |  |||||||| ||||    
T  16366630 gatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacataagaaatagatggtgg 16366558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 424
Target Start/End: Original strand, 33608934 - 33609036
Alignment:
Q  326 caccatcattaattaatttatacttattttcaaaaaatttgtgt-tttatctcttcaaatagaagaaatggaaagaatgataaat---aaggatcttaac 421  Q
    ||||||||||||||| ||||||||| |||  ||||||||||| | ||||||| | ||||| ||||||||||| ||||  ||||||   ||||||||||||    
T  33608934 caccatcattaattattttatacttttttaaaaaaaatttgtatctttatctttccaaatggaagaaatggagagaaacataaatgtaaaggatcttaac 33609033  T
Q  422 tcg 424  Q
    |||    
T  33609034 tcg 33609036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 45260390 - 45260462
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgg 321  Q
    ||||||||||||||| |||| ||||| |||| | |||| ||||||||||||||||||| ||||||||| ||||    
T  45260390 gatcctctccatttggcaaaataaattgagttttgcaagttggagagagatagacacaaaaaatagattgtgg 45260462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 320
Target Start/End: Original strand, 7712326 - 7712401
Alignment:
Q  245 gtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtg 320  Q
    |||| ||||||||||||||   ||| ||||||||  ||||||||| |||||||||||| |||||| ||||||||||    
T  7712326 gtaaagatcctctccatttataaaaataaatggaagatgcaatttagagagagatagagacataagatagatagtg 7712401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 316
Target Start/End: Complemental strand, 21151264 - 21151197
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagat 316  Q
    ||||||||||||||| |||| |||||||||| | |||| |||||||||||||||||||  ||||||||    
T  21151264 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagat 21151197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 18198368 - 18198294
Alignment:
Q  250 gatcctctccatttgacaaattaaatggag-tatgcaatttggagagagatagacacataaaatagatagtgggt 323  Q
    ||||||||||||||| |||| ||||||||| | ||||| ||||||| | ||||||||| ||||||||| ||||||    
T  18198368 gatcctctccatttggcaaaataaatggagttttgcaaattggagataaatagacacaaaaaatagatggtgggt 18198294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 29631156 - 29631085
Alignment:
Q  251 atcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||||||||  ||| |||||||||| |||||||||   ||||||||||||| || ||||||||||||||    
T  29631156 atcctctccatttggtaaaataaatggagtttgcaatttg--aagagatagacacaaaacatagatagtgggtc 29631085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 347
Target Start/End: Complemental strand, 36114045 - 36113960
Alignment:
Q  261 tttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgggtcgcaccatcattaattaatttata 347  Q
    ||||||||| |||||||||||| ||||||| ||| ||||||| | | |||||||||| ||| |  ||||||||||||||| ||||||    
T  36114045 tttgacaaaataaatggagtatacaatttgaagaaagatagatataaaaaatagataatggat-tcaccatcattaattattttata 36113960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 43183031 - 43183081
Alignment:
Q  260 atttgacaaattaaatggagtatgcaatttggagagagatagacacataaa 310  Q
    |||| ||||| |||||||||||||||||||||| |||||| ||||||||||    
T  43183031 atttaacaaaataaatggagtatgcaatttggaaagagatggacacataaa 43183081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 1194034 - 1193958
Alignment:
Q  241 acgagtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagata 317  Q
    ||||||||||||||||| |||||| |||| |||||||| ||| ||||||| ||  ||||| ||||| |||| |||||    
T  1194034 acgagtaaggatcctcttcatttgtcaaagtaaatggattatacaatttgaagttagatatacacaaaaaaaagata 1193958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 33450619 - 33450543
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataa-aatagatagtgggtc 324  Q
    |||||||||||||||  ||| ||||| |||| | |||||||||||||||||||||||| || ||||||| |||||||    
T  33450619 gatcctctccatttgctaaaataaattgagttttgcaatttggagagagatagacacaaaagaatagatggtgggtc 33450543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 33608845 - 33608901
Alignment:
Q  255 tctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaa 311  Q
    ||||||||||  ||| |||||||||| ||||||||||||||||||| ||||| ||||    
T  33608845 tctccatttggtaaaataaatggagtttgcaatttggagagagataaacacaaaaaa 33608901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 47226039 - 47226103
Alignment:
Q  250 gatcctctccatttgacaaattaaatggag-tatgcaatttggagagagatagacacataaaata 313  Q
    ||||||||||||||| |||| ||||||||| | ||||| ||||||||||||| ||||| ||||||    
T  47226039 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagataaacacaaaaaata 47226103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 339
Target Start/End: Original strand, 47270787 - 47270875
Alignment:
Q  251 atcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgggtcgcaccatcattaatt 339  Q
    ||||||||||||||  ||| ||||| ||| |||  |||| || ||||||||||||| |||||||   ||||||| ||||||||||||||    
T  47270787 atcctctccatttgtgaaaataaattgagaatgacatttagaaagagatagacacaaaaaataggacgtgggtcccaccatcattaatt 47270875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 12139435 - 12139364
Alignment:
Q  254 ctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||| |||||| |||| |||||| ||| | |||| ||||||||||||||||||| ||||||||| |||||||    
T  12139435 ctcttcatttggcaaaataaatgaagttttgcaagttggagagagatagacacaaaaaatagatggtgggtc 12139364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 40023221 - 40023284
Alignment:
Q  251 atcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatag 314  Q
    |||||||| |||||| ||| ||||  |||||| ||||||||||| ||||||||| |||||||||    
T  40023221 atcctctctatttgaaaaaataaaacgagtatacaatttggagaaagatagacatataaaatag 40023284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 44390889 - 44390835
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagaca 304  Q
    ||||||||||||||   ||| ||||||||  ||||||||||||||||||||||||    
T  44390889 gatcctctccatttataaaaataaatggaagatgcaatttggagagagatagaca 44390835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 7373957 - 7373904
Alignment:
Q  271 taaatggagtatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||||||  ||||||||||||||||||||||  ||| |||||||| ||||||||    
T  7373957 taaatgggatatgcaatttggagagagataggtacaaaaaatagacagtgggtc 7373904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 46802288 - 46802369
Alignment:
Q  243 gagtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||||||||||||||| ||||  ||||  |||||||| |||  |||| |||||||||||||| | ||||||||  |||||||    
T  46802288 gagtaaggatcctctcgatttctcaaaagaaatggaggatgtcatttagagagagatagacataaaaaatagacggtgggtc 46802369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 25084730 - 25084766
Alignment:
Q  288 ttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  25084730 ttggagagagatagacacaaaaaatagatggtgggtc 25084766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 245 - 324
Target Start/End: Complemental strand, 29341111 - 29341032
Alignment:
Q  245 gtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||| |||||||||||||||  | | |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29341111 gtaaagatcctctccatttggtataataaatggagtatgcaatttggagagagatagacacagaaaatagatagtgggtc 29341032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 9460592 - 9460662
Alignment:
Q  243 gagtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaata 313  Q
    ||||||||||||||||||||||  ||| ||||| |||||||||||||||||||||||||||||||| ||||    
T  9460592 gagtaaggatcctctccatttggtaaaataaatagagtatgcaatttggagagagatagacacatataata 9460662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 35660572 - 35660647
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||||||||| |||| |||||||||| | |||| ||||||||||||||||||| ||||||||| |||||||    
T  35660572 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtc 35660647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 37266843 - 37266768
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||||||||| |||| |||||||||| | |||| ||||||||||||||||||| ||||||||| |||||||    
T  37266843 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtc 37266768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 250 - 320
Target Start/End: Complemental strand, 18653472 - 18653402
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtg 320  Q
    ||||||||| | ||| |||| |||||||||| ||||||||| ||||||||||||||| |||||||||||||    
T  18653472 gatcctctcaaattgtcaaaataaatggagtttgcaatttgaagagagatagacacaaaaaatagatagtg 18653402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 31653151 - 31653078
Alignment:
Q  245 gtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatag 318  Q
    |||| |||||| ||||||||  | | ||||||| |||||||||||||||||||||| |||||||||||||||||    
T  31653151 gtaaagatcctatccatttggtataataaatggcgtatgcaatttggagagagataaacacataaaatagatag 31653078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 18625384 - 18625459
Alignment:
Q  250 gatcctctccatttgacaaattaaatggag-tatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||||||||| |||| ||||||||| | ||||| ||||||||||| ||||||| ||||||||| |||||||    
T  18625384 gatcctctccatttggcaaaataaatggagatttgcaagttggagagagaaagacacaaaaaatagatggtgggtc 18625459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 322
Target Start/End: Complemental strand, 31546602 - 31546525
Alignment:
Q  245 gtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtggg 322  Q
    |||| |||| || ||||||| || | |||||||||||||||||||| |||||| |||||| ||||||||||| |||||    
T  31546602 gtaaagatcatccccatttggcataataaatggagtatgcaatttgaagagaggtagacatataaaatagatggtggg 31546525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 321
Target Start/End: Complemental strand, 11775905 - 11775833
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgg 321  Q
    |||||||||||||||  ||| |||||||||| | |||| ||||||||||||||||||| ||||||||| ||||    
T  11775905 gatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgg 11775833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 316
Target Start/End: Complemental strand, 13032230 - 13032163
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagat 316  Q
    ||||||||||||||| |||| |||||||||| | |||| |||||||||||||||||||  ||||||||    
T  13032230 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagat 13032163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 4895699 - 4895773
Alignment:
Q  251 atcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||||||  ||||| |||| |||||||||| | |||| ||||||||||||||||||| ||||||||| |||||||    
T  4895699 atcctctttatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtc 4895773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 252 - 324
Target Start/End: Complemental strand, 39902525 - 39902452
Alignment:
Q  252 tcctctccatttgacaaattaaatggag-tatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||||||||||||||||| ||||||||| | | ||| ||||||||||||| |||||  |||||||| |||||||    
T  39902525 tcctctccatttgacaaaataaatggagttttacaagttggagagagataaacacaagaaatagatggtgggtc 39902452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 321
Target Start/End: Complemental strand, 34827304 - 34827232
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagt-atgcaatttggagagagatagacacataaaatagatagtgg 321  Q
    |||| |||||||||  |||| |||||||||| |||||| ||||||||||||||||| | ||||||||| ||||    
T  34827304 gatcatctccatttagcaaaataaatggagttatgcaagttggagagagatagacaaaaaaaatagatggtgg 34827232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 321
Target Start/End: Complemental strand, 43309220 - 43309148
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgg 321  Q
    ||||||||  |||||| ||| |||||||||| | |||| ||||||||||||||||| | ||||||||||||||    
T  43309220 gatcctctttatttgataaaataaatggagttttgcaagttggagagagatagacataaaaaatagatagtgg 43309148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 10361978 - 10362049
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgg 321  Q
    ||||||||||||||   ||| ||||||||  |||||||| ||||||||||||| ||||||||| | ||||||    
T  10361978 gatcctctccatttataaaactaaatggaagatgcaattaggagagagatagagacataaaattggtagtgg 10362049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 321
Target Start/End: Original strand, 11999599 - 11999634
Alignment:
Q  286 atttggagagagatagacacataaaatagatagtgg 321  Q
    |||| |||||||||||||||||||||||||||||||    
T  11999599 atttagagagagatagacacataaaatagatagtgg 11999634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 32129580 - 32129655
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatgc-aatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||||||||| |||| |||||||||| |   || ||||||||||||||||||  ||||||||| |||||||    
T  32129580 gatcctctccatttggcaaaataaatggagttttataagttggagagagatagacaccaaaaatagatggtgggtc 32129655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 1475651 - 1475709
Alignment:
Q  282 tgcaatttggagagagatagacacataaaatagatagtgggtcgcaccatcattaatta 340  Q
    ||||| || |||||| ||||| ||| ||||||| ||||||||| |||||||||||||||    
T  1475651 tgcaagtttgagagaaatagatacaaaaaatagctagtgggtcccaccatcattaatta 1475709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 25941195 - 25941237
Alignment:
Q  271 taaatggagtatgcaatttggagagagatagacacataaaata 313  Q
    |||||| |||||| ||||||||||| |||||||||||||||||    
T  25941195 taaatgaagtatgtaatttggagagcgatagacacataaaata 25941237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 27428845 - 27428911
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagat 316  Q
    ||||||||||||||   ||| ||||| ||  |||||||||||| ||||||||||||| |||||||||    
T  27428845 gatcctctccatttataaaaataaatagaagatgcaatttggaaagagatagacacaaaaaatagat 27428911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 398
Target Start/End: Complemental strand, 34827219 - 34827138
Alignment:
Q  317 agtgggtcgcaccatcattaattaatttatacttattttcaaaaaatttgtgt-tttatctcttcaaatagaagaaatggaaa 398  Q
    |||||||| ||||||| |||||||  || ||||| |||||||||  ||||||| |||||||||||||||  ||||||||||||    
T  34827219 agtgggtcccaccatctttaattatattttactttttttcaaaat-tttgtgtctttatctcttcaaatttaagaaatggaaa 34827138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 410
Target Start/End: Complemental strand, 25256179 - 25256138
Alignment:
Q  369 ttttatctcttcaaatagaagaaatggaaagaatgataaata 410  Q
    |||||||||||||||||||||||||||| ||| | |||||||    
T  25256179 ttttatctcttcaaatagaagaaatggagagactaataaata 25256138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 410
Target Start/End: Complemental strand, 25319968 - 25319927
Alignment:
Q  369 ttttatctcttcaaatagaagaaatggaaagaatgataaata 410  Q
    |||||||||||||||||||||||||||| ||| | |||||||    
T  25319968 ttttatctcttcaaatagaagaaatggagagactaataaata 25319927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 1422472 - 1422508
Alignment:
Q  266 caaattaaatggagtatgcaatttggagagagataga 302  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  1422472 caaaataaatggagtatgcaatttggggagagataga 1422508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 313
Target Start/End: Original strand, 2984389 - 2984417
Alignment:
Q  285 aatttggagagagatagacacataaaata 313  Q
    |||||||||||||||||||||||||||||    
T  2984389 aatttggagagagatagacacataaaata 2984417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 11357739 - 11357695
Alignment:
Q  271 taaatggagtatgcaatttggagagagatagacacataaaataga 315  Q
    ||||| |||||||||||||| ||| ||||||||| ||||||||||    
T  11357739 taaatagagtatgcaatttgaagatagatagacatataaaataga 11357695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 247 - 320
Target Start/End: Complemental strand, 36929830 - 36929757
Alignment:
Q  247 aaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtg 320  Q
    |||||| ||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36929830 aaggattctctccatttagcaaaataaatggagtatgcaatttggagagagatagacacataaaataggtagtg 36929757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 315
Target Start/End: Original strand, 22061433 - 22061498
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaataga 315  Q
    ||||||||| |||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||    
T  22061433 gatcctctcaatttgacaaaataaatgaagtatgcaatttgaagagagatagacacataaaataga 22061498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 19908895 - 19908821
Alignment:
Q  245 gtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtg 320  Q
    |||| |||||||| ||||||| | | ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19908895 gtaaagatcctcttcatttgatataataaatggagtatgcaatttggag-gagatagacacataaaatagatagtg 19908821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 316
Target Start/End: Complemental strand, 2063465 - 2063399
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagat 316  Q
    |||||||| ||||||||||| ||||| |||| ||||||||||||||||||||||||| |||||||||    
T  2063465 gatcctcttcatttgacaaaataaatagagtttgcaatttggagagagatagacacaaaaaatagat 2063399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 248 - 317
Target Start/End: Original strand, 30857640 - 30857709
Alignment:
Q  248 aggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagata 317  Q
    |||||||||||||||| ||||| ||||||||||||| |||||| |||||| |||||||| ||||||||||    
T  30857640 aggatcctctccatttcacaaaataaatggagtatgtaatttgaagagaggtagacacaaaaaatagata 30857709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 321
Target Start/End: Original strand, 4446847 - 4446931
Alignment:
Q  238 aaaacgagtaaggatcctctccatttgacaaattaaatgga-gtatgcaatttggagagagatagacacataaaatagatagtgg 321  Q
    |||||| || || ||||||||||||||| ||| |||||||| || | ||||||| ||||||||||||||||||||||||||||||    
T  4446847 aaaacgggttagtatcctctccatttgataaaataaatggaagtgtacaatttgaagagagatagacacataaaatagatagtgg 4446931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 36758670 - 36758726
Alignment:
Q  243 gagtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagat 299  Q
    |||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  36758670 gagtaaagatcctctccatttgtcaaagtaaatggagtatgcaatttggagagagat 36758726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 13238793 - 13238718
Alignment:
Q  250 gatcctctccatttgacaaattaaatggag-tatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||||||||| |||| ||||||||| | ||||| ||||||||||||||||||| ||||||||| |||||||    
T  13238793 gatcctctccatttggcaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagatggtgggtc 13238718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 271 - 322
Target Start/End: Complemental strand, 19905971 - 19905920
Alignment:
Q  271 taaatggagtatgcaatttggagagagatagacacataaaatagatagtggg 322  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  19905971 taaatggagtatgcaattttgagagagatagacacataaaatagatggtggg 19905920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 248 - 350
Target Start/End: Complemental strand, 30217587 - 30217484
Alignment:
Q  248 aggatcctctccatttgacaaattaaatgga-gtatgcaatttggagagagatagacacataaaatagatagtgggtcgcaccatcattaattaatttat 346  Q
    ||||||||||| |||||| ||| |||||||| | |  |||||| ||| |||||||||||||||||||||||||| ||| ||| ||||||||||| ||| |    
T  30217587 aggatcctctctatttgataaaataaatggaagcacacaatttagagtgagatagacacataaaatagatagtgagtcccactatcattaattatttttt 30217488  T
Q  347 actt 350  Q
    ||||    
T  30217487 actt 30217484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 323
Target Start/End: Complemental strand, 38397197 - 38397119
Alignment:
Q  245 gtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgggt 323  Q
    |||| ||||||||||||||   | | |||| ||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  38397197 gtaaagatcctctccattttgtataataaacggagtatgcaatttgaagagagatagacaaataaaatagatagtgggt 38397119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 250 - 339
Target Start/End: Original strand, 45625042 - 45625132
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatg-caatttggagagagatagacacataaaatagatagtgggtcgcaccatcattaatt 339  Q
    ||||||||||||||| |||| |||||||||| |  ||| |||||||||||||||||||  ||||| || ||||||| ||||||||||||||    
T  45625042 gatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacaagaaataaattgtgggtcccaccatcattaatt 45625132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 245 - 321
Target Start/End: Complemental strand, 15709884 - 15709808
Alignment:
Q  245 gtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgg 321  Q
    ||||| ||| |||| ||||  |||| |||||||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  15709884 gtaagaatcttctcgatttagcaaaataaatggaatatgcaatttggagagagataaacatataaaatagatagtgg 15709808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 248 - 320
Target Start/End: Original strand, 31618730 - 31618801
Alignment:
Q  248 aggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtg 320  Q
    |||||||||||||||||| |||  ||||||||||| ||||||||||| ||||||| | |||||||||||||||    
T  31618730 aggatcctctccatttgataaag-aaatggagtatacaatttggagaaagatagatatataaaatagatagtg 31618801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 250 - 321
Target Start/End: Complemental strand, 35316937 - 35316865
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgg 321  Q
    ||||||||||||||| |||| |||||||||| | |||| ||||||||||||||||||| ||||||||| ||||    
T  35316937 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgg 35316865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 35315257 - 35315319
Alignment:
Q  255 tctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagata 317  Q
    |||||||||| || | ||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  35315257 tctccatttggcataataagtggactatgcaatttgaagagagatagacacataaaatagata 35315319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 3354779 - 3354844
Alignment:
Q  285 aatttggagagagatagacacataaaatagatagtgggtcgcaccatcattaattaatttatactt 350  Q
    |||||||||||||||||||||| ||||||  | ||||||| ||||||||||||||| ||| |||||    
T  3354779 aatttggagagagatagacacaaaaaataagtggtgggtcccaccatcattaattattttttactt 3354844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 8007825 - 8007768
Alignment:
Q  243 gagtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagata 300  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||||| || ||||||    
T  8007825 gagtaagaatcatctccatttgacaaaataaatggagtatgcaatttgaagggagata 8007768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 30709187 - 30709147
Alignment:
Q  284 caatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  30709187 caatttggagagagatagacacataaaatagatattgggtc 30709147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 323
Target Start/End: Original strand, 34511982 - 34512062
Alignment:
Q  243 gagtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgggt 323  Q
    |||||| |||| |||| |||||  ||| ||||| ||| |  ||||||||||| ||||||||||||||||||||||||||||    
T  34511982 gagtaaagatcatctctatttgttaaaataaatagaggaaacaatttggagaaagatagacacataaaatagatagtgggt 34512062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 23259450 - 23259525
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||||||||| |||| ||||||| || | |||| ||||||||||||||||||| ||||||| | |||||||    
T  23259450 gatcctctccatttggcaaaataaatggtgttttgcaagttggagagagatagacacaaaaaatagctggtgggtc 23259525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 319
Target Start/End: Complemental strand, 15722350 - 15722276
Alignment:
Q  245 gtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagt 319  Q
    ||||| |||||||| ||||   ||| |||||||| ||||||||||||| ||||||| ||| ||||||||||||||    
T  15722350 gtaagaatcctctctatttagaaaaataaatggaatatgcaatttggaaagagataaacatataaaatagatagt 15722276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 311
Target Start/End: Complemental strand, 43078014 - 43077944
Alignment:
Q  241 acgagtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaa 311  Q
    ||||| || |||||||| |||||| |||| ||||| |||||| ||||||| ||||||||||||||| ||||    
T  43078014 acgaggaaagatcctcttcatttgtcaaagtaaatagagtatacaatttgaagagagatagacacaaaaaa 43077944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 317
Target Start/End: Complemental strand, 26800445 - 26800368
Alignment:
Q  240 aacgagtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagata 317  Q
    |||| |||| ||||||||| |||||||||| |||||  | ||||||||||| | | ||||| ||||||||||||||||    
T  26800445 aacgggtaaagatcctctctatttgacaaaataaattaaatatgcaatttgtaaaaagataaacacataaaatagata 26800368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 28853160 - 28853091
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagt 319  Q
    ||||||||||||||  |||| ||||||||| || ||||||||| ||||||||||| | |||| |||||||    
T  28853160 gatcctctccatttatcaaaataaatggaggatacaatttggaaagagatagacataaaaaagagatagt 28853091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 324
Target Start/End: Complemental strand, 35315628 - 35315539
Alignment:
Q  235 ttaaaaacgagtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||| || | ||||||||||||||   ||| ||||||||  |||||||||||||||||||| ||||| | ||||| | |||||||    
T  35315628 ttaaaaacgggttaagatcctctccatttataaaaataaatggaagatgcaatttggagagagataaacacaaacaataggtggtgggtc 35315539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 30709266 - 30709230
Alignment:
Q  277 gagtatgcaatttggagagagatagacacataaaata 313  Q
    |||||||||||| ||||||||||||||||||||||||    
T  30709266 gagtatgcaattaggagagagatagacacataaaata 30709230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 316
Target Start/End: Complemental strand, 11864981 - 11864914
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatg-caatttggagagagatagacacataaaatagat 316  Q
    ||||||||||||||  |||| |||||||||| |  ||| ||||||||||||||||||| |||||||||    
T  11864981 gatcctctccatttatcaaaataaatggagttttacaagttggagagagatagacacaaaaaatagat 11864914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 28565004 - 28564929
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatgc-aatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||||||||| |||| |||||||||| |   || ||| ||||||||||||||| ||||||||| |||||||    
T  28565004 gatcctctccatttggcaaaataaatggagttttttaagttgtagagagatagacacaaaaaatagatggtgggtc 28564929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 39465826 - 39465779
Alignment:
Q  293 gagagatagacacataaaatagatagtgggtcgcaccatcattaatta 340  Q
    |||||||||| ||| ||||||||| ||||||| |||||||||||||||    
T  39465826 gagagatagatacaaaaaatagatggtgggtcccaccatcattaatta 39465779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 324
Target Start/End: Original strand, 21454480 - 21454532
Alignment:
Q  271 taaatggagtatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||||||||| || ||||| |||||||||||||||| ||||||||| |||||||    
T  21454480 taaatggagtttgtaatttagagagagatagacaca-aaaatagattgtgggtc 21454532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 306
Target Start/End: Original strand, 36758820 - 36758881
Alignment:
Q  245 gtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacaca 306  Q
    |||| ||||||||||||||   ||| ||||||||   |||||||||||||||||||||||||    
T  36758820 gtaaagatcctctccatttataaaaataaatggaagttgcaatttggagagagatagacaca 36758881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 40640782 - 40640706
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataa-aatagatagtgggtc 324  Q
    |||||||||||||||  ||| |||||||||| | |||||||||||||||||| | ||| || ||||||| |||||||    
T  40640782 gatcctctccatttgttaaaataaatggagttttgcaatttggagagagatatatacaaaagaatagatggtgggtc 40640706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 250 - 340
Target Start/End: Original strand, 1516170 - 1516260
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgggtcgcaccatcattaatta 340  Q
    |||||| |||||||| |||| |||||||||| |||||||||||||||||| || ||| ||||||||| |||| || |||||||||||||||    
T  1516170 gatcctatccatttggcaaaataaatggagtttgcaatttggagagagatggatacaaaaaatagatggtggatcccaccatcattaatta 1516260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 250 - 340
Target Start/End: Original strand, 1518259 - 1518349
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgggtcgcaccatcattaatta 340  Q
    |||||| |||||||| |||| |||||||||| |||||||||||||||||| || ||| ||||||||| |||| || |||||||||||||||    
T  1518259 gatcctatccatttggcaaaataaatggagtttgcaatttggagagagatggatacaaaaaatagatggtggatcccaccatcattaatta 1518349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 396
Target Start/End: Complemental strand, 32737969 - 32737821
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtcgcaccatcattaattaatttatac 348  Q
    ||||||||||||||| |||| ||||| |||| | |||  ||||||||||||||||||| ||||||||| ||||||  |||||||||||||||  || |||    
T  32737969 gatcctctccatttggcaaaataaatagagttttgcaggttggagagagatagacacaaaaaatagatggtgggttccaccatcattaattatattttac 32737870  T
Q  349 ttattttcaaaaaatt-tgtgt-tttatctcttcaaatagaagaaatgga 396  Q
    || |||||||||  || ||||| ||||||||| ||||| |||||||||||    
T  32737869 tt-ttttcaaaattttatgtgtctttatctctccaaattgaagaaatgga 32737821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 245 - 321
Target Start/End: Original strand, 17828527 - 17828603
Alignment:
Q  245 gtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgg 321  Q
    |||| |||||||| ||||||  | | ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17828527 gtaaagatcctctacatttggtataataattggagtatgcaatttggagagagatagacacataaaatagatagtgg 17828603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 7215816 - 7215890
Alignment:
Q  251 atcctctccatttgacaaattaaatgga-gtatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||||||||| ||| |||||||| ||   |||||||||||||||||||||||||||||||||||||||||    
T  7215816 atcctctccatttgataaaataaatggaagtgcacaatttggagagagatagacacataaaatagatagtgggtc 7215890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 2800572 - 2800646
Alignment:
Q  248 aggatcctctccatttgacaaattaaatggag-tatgcaatttggagagagatagacacataaaatagatagtgg 321  Q
    |||||||||||||||||| ||| | ||||||  ||  ||||||||||||||||||||||||||||||||||||||    
T  2800572 aggatcctctccatttgataaaattaatggaaatacacaatttggagagagatagacacataaaatagatagtgg 2800646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 346
Target Start/End: Original strand, 28696624 - 28696717
Alignment:
Q  255 tctccatttgacaaattaaatggagtatgcaatttggagagagatagac--acataaaatagatagtgggtcgcaccatcattaattaatttat 346  Q
    |||||||||| |||| ||||| |||| ||||||||||||||||||||||  | | ||||||||||||||||  ||| ||||||||||| |||||    
T  28696624 tctccatttggcaaaataaattgagtttgcaatttggagagagatagacaaaaaaaaaatagatagtgggttccacgatcattaattattttat 28696717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 409
Target Start/End: Complemental strand, 13324973 - 13324859
Alignment:
Q  292 agagagatagacacataaaatagatagtgggtcgcaccatcattaattaatttatacttattttcaaaaaatttgtgt-tttatctcttcaaatagaaga 390  Q
    ||||||||||||||||| |||| |||||||||  ||||||||||||||| |||||| || ||||    ||| |||||| |||||||||||||||  ||||    
T  13324973 agagagatagacacatataataaatagtgggttccaccatcattaattattttatatttttttt----aaaattgtgtctttatctcttcaaatgaaaga 13324878  T
Q  391 aatggaaagaatgataaat 409  Q
    ||| || ||||| ||||||    
T  13324877 aatagagagaatcataaat 13324859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 4804560 - 4804485
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatg-caatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||||||||| |||| |||||||||| |  ||| ||||||||||||||||||| ||||||||| |||||||    
T  4804560 gatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacaaaaaatagatggtgggtc 4804485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 9954332 - 9954391
Alignment:
Q  292 agagagatagacacataaaatagatagtgggtcgcacc-atcattaattaatttatactt 350  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| |||||    
T  9954332 agagagatagacacataaaatagatagtgggtcccaccaatcattaattattttttactt 9954391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 29229204 - 29229149
Alignment:
Q  251 atcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacaca 306  Q
    ||||||||||||||  | | ||||||||||||||||||||||||||||||||||||    
T  29229204 atcctctccatttggtataataaatggagtatgcaatttggagagagatagacaca 29229149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 30460930 - 30460879
Alignment:
Q  255 tctccatttgacaaattaaatggagtatgcaatttggagagagatagacaca 306  Q
    ||||||||||||||| |||||||||| ||||||||||||| |||||||||||    
T  30460930 tctccatttgacaaaataaatggagtttgcaatttggagaaagatagacaca 30460879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 250 - 340
Target Start/End: Original strand, 1515505 - 1515595
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgggtcgcaccatcattaatta 340  Q
    |||||| || ||||| |||| |||||||||| |||||||||||||||||| || | | ||||||||| |||| || |||| ||||||||||    
T  1515505 gatcctatcaatttggcaaaataaatggagtttgcaatttggagagagatggataaaaaaaatagatggtggatcccaccgtcattaatta 1515595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 243 - 350
Target Start/End: Original strand, 10203529 - 10203637
Alignment:
Q  243 gagtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatag--acacataaaatagatagtgggtcgcaccatcattaatta 340  Q
    |||||||||||| ||  ||||| |||| ||||||||||||| |||||||||| ||||||  ||||| |||||| ||||||||||   ||||||| |||||    
T  10203529 gagtaaggatcccctttatttgtcaaaataaatggagtatgtaatttggagatagatagacacacacaaaatacatagtgggtc-tgccatcatcaatta 10203627  T
Q  341 atttatactt 350  Q
     |||||||||    
T  10203628 ttttatactt 10203637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 324
Target Start/End: Complemental strand, 12412754 - 12412674
Alignment:
Q  245 gtaaggatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||| |||| |||||||||| |||| |||||||||| | |||| |||||||||||||||||||  |||||||| |||||||    
T  12412754 gtaaagatcttctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggtc 12412674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 7162196 - 7162121
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||| ||||||||||| ||| |||||||||| | |||| |||||||||||||||||||  |||||||| |||||||    
T  7162196 gatcatctccatttgataaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggtc 7162121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 13089712 - 13089787
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||||||||| |||| ||||||| || | |||| ||||||||||||||||||| || |||||| |||||||    
T  13089712 gatcctctccatttggcaaaataaatggtgttttgcaagttggagagagatagacacaaaatatagatggtgggtc 13089787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 227526 - 227602
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataa-aatagatagtgggtc 324  Q
    |||||||||||||||  ||| |||||||||| | ||| |||||||||||||||||||| || ||||||| |||||||    
T  227526 gatcctctccatttgctaaaataaatggagttttgcattttggagagagatagacacaaaagaatagatggtgggtc 227602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 316
Target Start/End: Complemental strand, 17944274 - 17944207
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagat 316  Q
    |||||||| |||||| |||| |||||||||| | | || ||||||||||||||||||| |||||||||    
T  17944274 gatcctcttcatttggcaaaataaatggagttttgtaagttggagagagatagacacaaaaaatagat 17944207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 44638044 - 44637982
Alignment:
Q  259 catttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgg 321  Q
    ||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  44638044 catttgacaaaataaatggagtatgcaattttgagagagataaacacataaaatagatagtgg 44637982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 248 - 317
Target Start/End: Original strand, 10474400 - 10474469
Alignment:
Q  248 aggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagata 317  Q
    ||||||||||| |||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||||    
T  10474400 aggatcctctctatttgacataataaatggagtatgcaattttgagagatatagacacataaaatagata 10474469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 245 - 321
Target Start/End: Complemental strand, 33632938 - 33632862
Alignment:
Q  245 gtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgg 321  Q
    |||| |||| ||||||||||  | | ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33632938 gtaaagatcttctccatttggtataataaatggagcatgcaatttggagagagatagacacataaaatagatagtgg 33632862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 29586457 - 29586378
Alignment:
Q  240 aacgagtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagt 319  Q
    |||| |||| |||||||| |||||  || | ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29586457 aacgggtaaagatcctcttcatttagcataataaatggagtatgcagtttggagagagatagacacataaaatagatagt 29586378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 323
Target Start/End: Original strand, 51982542 - 51982622
Alignment:
Q  243 gagtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgggt 323  Q
    |||||| ||||||||||||||   ||| ||||||||  |||||||||||||||||||||| ||||||||||| ||||||||    
T  51982542 gagtaaagatcctctccatttataaaaataaatggaagatgcaatttggagagagatagatacataaaatagttagtgggt 51982622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 324
Target Start/End: Original strand, 30235414 - 30235492
Alignment:
Q  246 taaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||||||| ||| ||||||  ||| |||||||||||||||||||| ||||||||||||| | ||||||||| |||||||    
T  30235414 taaggatcatcttcatttgttaaaataaatggagtatgcaatttgaagagagatagacataaaaaatagattgtgggtc 30235492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 43719910 - 43719985
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||||||||||||| ||||| |||||||||| | |||| ||||||||||||||||||| |||||| || |||||||    
T  43719910 gatcctctccatttaacaaaataaatggagttttgcaagttggagagagatagacacaaaaaataaattgtgggtc 43719985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 40851886 - 40851812
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggt 323  Q
    ||||||||| |||||||||| |||||||||| | |||| ||||||| ||||||||||| ||||||||| ||||||    
T  40851886 gatcctctcaatttgacaaaataaatggagttttgcaagttggagaaagatagacacaaaaaatagatggtgggt 40851812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 25285824 - 25285872
Alignment:
Q  273 aatggagtatgcaatttggagagagatagacacataaaatagatagtgg 321  Q
    ||||||| |||||||||  ||||||||||||||||||||||||||||||    
T  25285824 aatggagaatgcaatttatagagagatagacacataaaatagatagtgg 25285872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 27959169 - 27959101
Alignment:
Q  282 tgcaatttggagagagatagacacataaaatagatagtgggtcgcaccatcattaattaatttatactt 350  Q
    |||||||||| |||||||||||||| ||||||  | ||||||| ||||||||||||||| ||| |||||    
T  27959169 tgcaatttggggagagatagacacaaaaaataagtggtgggtcccaccatcattaattattttttactt 27959101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 321
Target Start/End: Complemental strand, 52859340 - 52859268
Alignment:
Q  250 gatcctctccatttgacaaattaaatggag-tatgcaatttggagagagatagacacataaaatagatagtgg 321  Q
    |||||||||||||||| ||| |||||| |  ||  |||||| |||||||||||||||||||||||||||||||    
T  52859340 gatcctctccatttgataaaataaatgaaaatacacaatttagagagagatagacacataaaatagatagtgg 52859268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 350
Target Start/End: Complemental strand, 3009343 - 3009233
Alignment:
Q  239 aaacgagtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgggtcgcaccatcattaat 338  Q
    ||||| |||| ||||||||||||||   ||| ||||||||   ||||||||||||||||||||||| | ||||||  |  |||||| |||||||||||||    
T  3009343 aaacgggtaaagatcctctccatttataaaaataaatggaagttgcaatttggagagagatagaca-aaaaaataagtgatgggtcccaccatcattaat 3009245  T
Q  339 taatttatactt 350  Q
    || ||| |||||    
T  3009244 tattttttactt 3009233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 19830394 - 19830469
Alignment:
Q  250 gatcctctccatttgacaaattaaatggag-tatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||||||||| |||| ||||||||| | ||||| |||| |||| ||||||||| ||||||||| |||||||    
T  19830394 gatcctctccatttggcaaaataaatggagttttgcaagttggggagaaatagacacaaaaaatagatggtgggtc 19830469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 316
Target Start/End: Complemental strand, 24754769 - 24754702
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatg-caatttggagagagatagacacataaaatagat 316  Q
    ||||||||||||||| |||| |||||||||| |  ||| ||||||||||||||||||| |||||||||    
T  24754769 gatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaaaatagat 24754702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 316
Target Start/End: Complemental strand, 24763766 - 24763699
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatg-caatttggagagagatagacacataaaatagat 316  Q
    ||||||||||||||| |||| |||||||||| |  ||| ||||||||||||||||||| |||||||||    
T  24763766 gatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaaaatagat 24763699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 27033763 - 27033688
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||| ||||||||||| ||| |||||||||| | |||| |||||||||||||||||||  |||||||| |||||||    
T  27033763 gatcatctccatttgataaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggtc 27033688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 2230094 - 2230028
Alignment:
Q  251 atcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagat 316  Q
    |||||||||||||| |||| ||| |||||| | |||| ||||||||||||||||||| |||||||||    
T  2230094 atcctctccatttggcaaaataattggagttttgcaagttggagagagatagacacaaaaaatagat 2230028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 2509131 - 2509188
Alignment:
Q  243 gagtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagata 300  Q
    |||| ||||||||||| |||||||||  |||||| ||||||||||||| |||||||||    
T  2509131 gagttaggatcctctctatttgacaacataaatgaagtatgcaatttgaagagagata 2509188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 566746 - 566798
Alignment:
Q  259 catttgacaaattaaatggagtatgcaatttggagagagatagacacataaaa 311  Q
    |||||| |||| |||||||||| ||||||||||||||||||||| ||| ||||    
T  566746 catttggcaaaataaatggagtttgcaatttggagagagatagatacaaaaaa 566798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 34373939 - 34373868
Alignment:
Q  254 ctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||||| |||| ||||| | || | |||| ||||||||||||||||||| ||||||||| |||||||    
T  34373939 ctctccatttggcaaaataaattgtgttttgcaagttggagagagatagacacaaaaaatagatggtgggtc 34373868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 306
Target Start/End: Original strand, 37323937 - 37323992
Alignment:
Q  251 atcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacaca 306  Q
    |||||||| ||||  |||| ||||||||| || |||||||||||||||||||||||    
T  37323937 atcctctctatttatcaaaataaatggaggatacaatttggagagagatagacaca 37323992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 46167504 - 46167430
Alignment:
Q  251 atcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||||||||||||  |||| |||||||||| | | || ||||||||||||||||||| |||||| || |||||||    
T  46167504 atcctctccatttagcaaaataaatggagttttgtaagttggagagagatagacacaaaaaatatatggtgggtc 46167430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 550790 - 550851
Alignment:
Q  260 atttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgg 321  Q
    ||||| |||| |||||||||| ||||||||||||| ||||| | ||| ||||||||| ||||    
T  550790 atttggcaaaataaatggagtttgcaatttggagaaagatatatacaaaaaatagatggtgg 550851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 321
Target Start/End: Original strand, 36354229 - 36354298
Alignment:
Q  252 tcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgg 321  Q
    |||||||||||||  ||| |||||||| ||| ||||||||||||||||  ||||| |||| ||| |||||    
T  36354229 tcctctccatttgttaaagtaaatggaatatacaatttggagagagatgaacacaaaaaagagaaagtgg 36354298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 310
Target Start/End: Original strand, 50462639 - 50462704
Alignment:
Q  245 gtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaa 310  Q
    |||| ||||||||||||||   | | ||||||||| || ||||||||||||||||||| |||||||    
T  50462639 gtaaagatcctctccatttagtataataaatggagcatccaatttggagagagatagaaacataaa 50462704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 50463345 - 50463406
Alignment:
Q  304 acataaaatagatagtgggtcgcaccatcattaattaatttatacttattttcaaaaaattt 365  Q
    ||||||| ||||||||||||| || |||||||||||| ||| || || |||| |||||||||    
T  50463345 acataaagtagatagtgggtcccatcatcattaattattttttaatttttttaaaaaaattt 50463406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 28229366 - 28229430
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatag 314  Q
    ||||||||||||||   ||| |||||||||| ||||||| ||| ||| ||||||||| |||||||    
T  28229366 gatcctctccatttattaaaataaatggagtgtgcaattaggaaagatatagacacaaaaaatag 28229430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 28792065 - 28792001
Alignment:
Q  245 gtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataa 309  Q
    |||| |||| |||||||||   ||| ||||||||  |||||||||||||||||||||| ||||||    
T  28792065 gtaaagatcatctccatttataaaaataaatggaagatgcaatttggagagagatagagacataa 28792001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 48084932 - 48084856
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataa-aatagatagtgggtc 324  Q
    |||||||||||||||  ||| ||||| |||| | ||||||||| |||||||||||||| || ||||||| |||||||    
T  48084932 gatcctctccatttgctaaaataaattgagttttgcaatttggggagagatagacacaaaagaatagatggtgggtc 48084856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 340
Target Start/End: Original strand, 52859375 - 52859451
Alignment:
Q  261 tttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgggtcgcaccatcattaatta 340  Q
    ||||||||| |||||||||| | ||||||||| |||  |||||||| ||||||||| ||| ||| ||| |||||||||||    
T  52859375 tttgacaaaataaatggagtttacaatttggaaaga--tagacaca-aaaatagatggtgcgtcccacaatcattaatta 52859451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 54911731 - 54911691
Alignment:
Q  284 caatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||| ||||||||||| ||||||||||| |||||||||    
T  54911731 caatttgaagagagatagagacataaaataggtagtgggtc 54911691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 44239313 - 44239250
Alignment:
Q  243 gagtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacaca 306  Q
    |||||||||||||||||||||| |||||||||||||||||  |||||||||||| |||||||||    
T  44239313 gagtaaggatcctctccatttgtcaaattaaatggagtatataatttggagagaaatagacaca 44239250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 39426317 - 39426247
Alignment:
Q  255 tctccatttgacaaattaaatgga-gtatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||||| ||| |||||||| |||  |||||||||||||||||||||||||||||||||||||||||    
T  39426317 tctccatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagatagtgggtc 39426247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 24848753 - 24848650
Alignment:
Q  18 gattcttctaaactcaactctgagaatccgatagctgattgtttata---------gtgataaaaagtcccactaaaccaacctttgtattttaatcatc 108  Q
    |||||||||| || ||||||| ||||||||| ||||||||||||| |         ||||||||||| ||||||||||||||||||||||||||||||||    
T  24848753 gattcttctatacccaactctcagaatccgaaagctgattgtttagacttattagagtgataaaaag-cccactaaaccaacctttgtattttaatcatc 24848655  T
Q  109 aatat 113  Q
    |||||    
T  24848654 aatat 24848650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 50484498 - 50484424
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggt 323  Q
    ||||||||||||||| |||| |||||||||| | |||| ||||||||||||||||||| ||||||||| ||||||    
T  50484498 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggt 50484424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 248 - 324
Target Start/End: Original strand, 26860012 - 26860088
Alignment:
Q  248 aggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||||| |||| |||||| ||| |||||||||||   |||||| |||||||||||||||||||||||||||| ||||    
T  26860012 aggatcatctctatttgataaaataaatggagtacataatttgaagagagatagacacataaaatagatagtaggtc 26860088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 237 - 321
Target Start/End: Complemental strand, 32618924 - 32618841
Alignment:
Q  237 aaaaacgagtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgg 321  Q
    ||||||| |||| |||||||| |||||| || | |||||||||||| |||||||||||||||| |||| || |||||||||||||    
T  32618924 aaaaacgggtaaagatcctcttcatttggcataataaatggagtatccaatttggagagagatggacatat-aaatagatagtgg 32618841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 12380840 - 12380907
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagat 316  Q
    ||||||||||||||| |||| |||||||||| | |||| ||||||||||||||||||| |||||||||    
T  12380840 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 12380907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 12384907 - 12384974
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagat 316  Q
    ||||||||||||||| |||| |||||||||| | |||| ||||||||||||||||||| |||||||||    
T  12384907 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 12384974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 340
Target Start/End: Complemental strand, 45978117 - 45978026
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtcgcaccatcattaatta 340  Q
    ||||||||| |||||| ||| |||||||||| | |||| ||||||||||||||| ||| ||||||||| ||||||| || |||| |||||||    
T  45978117 gatcctctctatttgataaaataaatggagttttgcaagttggagagagatagatacaaaaaatagatggtgggtcccagcatcgttaatta 45978026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 50294026 - 50294101
Alignment:
Q  250 gatcctctccatttgacaaattaaatggag-tatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||||||| |||||| |||| ||||||||| | ||||| ||||||||||||||||||| ||||||||| |||||||    
T  50294026 gatcctcttcatttggcaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagatggtgggtc 50294101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 32887742 - 32887815
Alignment:
Q  248 aggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgg 321  Q
    |||||||||| ||||||| ||| |||||||||||  || ||| |||| |||||||||||||||||| |||||||    
T  32887742 aggatcctcttcatttgataaaataaatggagtacacagtttagagaaagatagacacataaaataaatagtgg 32887815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 321
Target Start/End: Original strand, 35534748 - 35534817
Alignment:
Q  251 atcctctccatttgacaaattaaatgga-gtatgcaatttggagagagatagacacataaaatagatagtgg 321  Q
    ||||||||||||||| ||| |||||||| |||  ||||||  ||||||||||||||||||||||||||||||    
T  35534748 atcctctccatttgataaaataaatggaagtacacaattt--agagagatagacacataaaatagatagtgg 35534817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 317
Target Start/End: Original strand, 5047343 - 5047412
Alignment:
Q  246 taaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagata 317  Q
    ||||||||||||||||||||| |  | ||||||  ||||||||||||||||||| ||  |||||||||||||    
T  5047343 taaggatcctctccatttgacta--tgaatggaaaatgcaatttggagagagattgatgcataaaatagata 5047412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 47296096 - 47296164
Alignment:
Q  243 gagtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaa 311  Q
    |||||| |||| |||||||||   |||||||||| ||||| |||||||||||||||| |||||| ||||    
T  47296096 gagtaaagatcatctccatttattaaattaaatgaagtatacaatttggagagagatggacacaaaaaa 47296164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 12151879 - 12151804
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||| |||||||||| |||| |||||||||| | || | ||||||||||| ||||||| ||||||||| |||||||    
T  12151879 gatcttctccatttggcaaaataaatggagttttgccagttggagagagaaagacacaaaaaatagattgtgggtc 12151804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 48327117 - 48327184
Alignment:
Q  250 gatcctctccatttgacaaattaaatggag-tatgcaatttggagagagatagacacataaaatagat 316  Q
    |||| |||||||||| |||| ||||||||| | ||||| ||||||||||||||||| | |||||||||    
T  48327117 gatcatctccatttggcaaaataaatggagatttgcaagttggagagagatagacaaaaaaaatagat 48327184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 330
Target Start/End: Complemental strand, 40328387 - 40328309
Alignment:
Q  250 gatcctctccatttgacaaattaaatggag-tatgcaatttggagagagatagacacataaaatagatagtgggtcgcacca 330  Q
    ||||||||||||||| |||| ||||||||| | ||||| |||  |||||||||||||| ||||||||| ||||||| |||||    
T  40328387 gatcctctccatttggcaaaataaatggagttttgcaaattg--gagagatagacaca-aaaatagatggtgggtcccacca 40328309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 414
Target Start/End: Original strand, 18899514 - 18899619
Alignment:
Q  308 aaaatagatagtgggtcgcaccatcattaattaatttatacttattttcaaaaa-atttgtgtt-ttatctcttcaaatagaagaaatggaaagaatgat 405  Q
    ||||||||||||||||  ||||| |||||||||  ||||| || |||||||||| |||| | || ||||||||||||||  ||||||| || ||||| ||    
T  18899514 aaaatagatagtgggttccaccaccattaatta--ttatattt-ttttcaaaaatatttatattattatctcttcaaatgaaagaaattgagagaattat 18899610  T
Q  406 aaataagga 414  Q
    |||||||||    
T  18899611 aaataagga 18899619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 18976267 - 18976324
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacaca 306  Q
    |||||||||||||||  ||| ||||| |||| | ||||||||||||||||||||||||    
T  18976267 gatcctctccatttgctaaaataaattgagttttgcaatttggagagagatagacaca 18976324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 49384627 - 49384680
Alignment:
Q  251 atcctctccatttgacaaattaaatggagtatgcaatttggagagagatagaca 304  Q
    ||||||||||||||  ||| |||||||| ||| |||||| ||||||||||||||    
T  49384627 atcctctccatttgttaaaataaatggaatatacaatttagagagagatagaca 49384680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 245 - 321
Target Start/End: Complemental strand, 58796 - 58720
Alignment:
Q  245 gtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgg 321  Q
    ||||| ||| |||| ||||  |||| |||||||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  58796 gtaagaatcttctcgatttagcaaaataaatggaatatgcaatttggagagagataaacatataaaatagatagtgg 58720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 319
Target Start/End: Complemental strand, 70907 - 70833
Alignment:
Q  245 gtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagt 319  Q
    ||||| |||||||| ||||   ||| |||||||| ||||||||||||| ||||||| ||| ||||||||||||||    
T  70907 gtaagaatcctctctatttagaaaaataaatggaatatgcaatttggaaagagataaacatataaaatagatagt 70833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 245 - 321
Target Start/End: Complemental strand, 18689607 - 18689531
Alignment:
Q  245 gtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgg 321  Q
    ||||| ||| |||| ||||  |||| |||||||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  18689607 gtaagaatcttctcgatttagcaaaataaatggaatatgcaatttggagagagataaacatataaaatagatagtgg 18689531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 28069831 - 28069756
Alignment:
Q  250 gatcctctccatttgacaaattaaatggag-tatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||||||||| |||| ||||||||| | ||||| ||||||||||| ||||||| ||||||||| |||||||    
T  28069831 gatcctctccatttggcaaaataaatggagatttgcaagttggagagagaaagacacaaaaaatagatggtgggtc 28069756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 37966407 - 37966473
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagat 316  Q
    ||||||||||||||| |||| |||||||| | ||||||||| ||||||||| ||||| |||||||||    
T  37966407 gatcctctccatttggcaaaataaatggaatttgcaatttgaagagagataaacacaaaaaatagat 37966473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 248 - 321
Target Start/End: Complemental strand, 42761827 - 42761753
Alignment:
Q  248 aggatcctctccatttgacaaattaaatgga-gtatgcaatttggagagagatagacacataaaatagatagtgg 321  Q
    |||||||||| || || | ||| |||||||| ||| |||||||| ||||||||||||||||||||||||||||||    
T  42761827 aggatcctcttcacttaataaaataaatggaagtacgcaatttgaagagagatagacacataaaatagatagtgg 42761753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 324
Target Start/End: Original strand, 30426635 - 30426707
Alignment:
Q  253 cctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||||||||||| |||| ||||||| || | |||| ||||||||||||||||||| ||||||||| |||||||    
T  30426635 cctctccatttggcaaaataaatggtgttttgcaagttggagagagatagacacaaaaaatagatggtgggtc 30426707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 236 - 311
Target Start/End: Original strand, 44517613 - 44517688
Alignment:
Q  236 taaaaacgagtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaa 311  Q
    ||||||||||||||||||  ||||||||  |||| ||||||||||||  |||||||| |||||||| |||| ||||    
T  44517613 taaaaacgagtaaggatctcctccatttatcaaaataaatggagtatataatttggaaagagataggcacacaaaa 44517688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 318
Target Start/End: Complemental strand, 17520467 - 17520425
Alignment:
Q  276 ggagtatgcaatttggagagagatagacacataaaatagatag 318  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  17520467 ggagaatgcaatttggagagatatagacacataaaatagatag 17520425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 40695211 - 40695277
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagat 316  Q
    |||| |||||||||  |||| |||||||||| || || ||||||||||||||||||| |||||||||    
T  40695211 gatcttctccatttagcaaaataaatggagtttggaagttggagagagatagacacaaaaaatagat 40695277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 319 - 394
Target Start/End: Original strand, 10652667 - 10652744
Alignment:
Q  319 tgggtcgcaccatcattaatta-atttatacttattttcaaaaaatt-tgtgttttatctcttcaaatagaagaaatg 394  Q
    |||||| ||||||||||||||| |||| ||||| |||||||||  || |||||||||||||| ||||| |||||||||    
T  10652667 tgggtcccaccatcattaattatatttttactttttttcaaaattttatgtgttttatctctccaaattgaagaaatg 10652744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 36991468 - 36991413
Alignment:
Q  250 gatcctctccatttgacaaattaaatggag-tatgcaatttggagagagatagaca 304  Q
    ||||||||||||||| |||| ||||||||| | ||||| |||||||||||||||||    
T  36991468 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagaca 36991413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 321
Target Start/End: Original strand, 42338006 - 42338081
Alignment:
Q  246 taaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgg 321  Q
    |||||||||||| ||||||| ||| |||||  |||||  |||||||||||| ||| |||  |||||||||||||||    
T  42338006 taaggatcctcttcatttgataaaataaattaagtatataatttggagagatatatacatgtaaaatagatagtgg 42338081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 8412727 - 8412685
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatgcaatttgga 292  Q
    |||||||| ||||||||||| |||||||||| |||||||||||    
T  8412727 gatcctcttcatttgacaaaataaatggagtttgcaatttgga 8412685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 336
Target Start/End: Original strand, 12177577 - 12177631
Alignment:
Q  282 tgcaatttggagagagatagacacataaaatagatagtgggtcgcaccatcatta 336  Q
    ||||| ||||||||||||||| ||| ||||||||| |||| || |||||||||||    
T  12177577 tgcaagttggagagagatagatacaaaaaatagatggtggatcccaccatcatta 12177631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 336
Target Start/End: Original strand, 12422005 - 12422059
Alignment:
Q  282 tgcaatttggagagagatagacacataaaatagatagtgggtcgcaccatcatta 336  Q
    ||||| ||||||||||||||| ||| ||||||||| |||| || |||||||||||    
T  12422005 tgcaagttggagagagatagatacaaaaaatagatggtggatcccaccatcatta 12422059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 20169179 - 20169125
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagaca 304  Q
    ||||||||||||||   ||| ||||||||  ||||||||||||||||||||||||    
T  20169179 gatcctctccatttataaaaataaatggaagatgcaatttggagagagatagaca 20169125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 41511373 - 41511299
Alignment:
Q  251 atcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||| ||| ||||| |||||||||| | |||| ||||| ||||||||| | | |||||||||||||||||    
T  41511373 atcctctccgtttaacaaaataaatggagttttgcaagttggaaagagatagatataaaaaatagatagtgggtc 41511299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 401
Target Start/End: Complemental strand, 21486652 - 21486607
Alignment:
Q  357 aaaaaatttgtgtttt-atctcttcaaatagaagaaatggaaagaa 401  Q
    ||||||||||||| || |||||||||||| ||||||||||||||||    
T  21486652 aaaaaatttgtgtcttcatctcttcaaatggaagaaatggaaagaa 21486607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 208175 - 208100
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||||||||||||| |||| |||||||||| | |||| ||||||||||||| ||||| ||||||||| |||||||    
T  208175 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagataaacacaaaaaatagatggtgggtc 208100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 9164 - 9239
Alignment:
Q  250 gatcctctccatttgacaaattaaatggag-tatgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||| |||||||||| |||| ||||||||| | ||||| ||||||||||||||||||| ||||||||| |||||||    
T  9164 gatcatctccatttggcaaaataaatggagatttgcaagttggagagagatagacacagaaaatagatggtgggtc 9239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 321
Target Start/End: Original strand, 22406 - 22477
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatagatagtgg 321  Q
    |||||||| |||||  |||| |||||||||| ||||||||  | ||||||||||||| ||||||||||||||    
T  22406 gatcctctgcatttagcaaaataaatggagtttgcaatttacaaagagatagacacaaaaaatagatagtgg 22477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 246348 - 246297
Alignment:
Q  243 gagtaaggatcctctccatttgacaaattaaatggagtatgcaatttggaga 294  Q
    |||||||||||||||||||||  |||| |||||||||||| |||||||||||    
T  246348 gagtaaggatcctctccatttatcaaaataaatggagtatacaatttggaga 246297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 250 - 340
Target Start/End: Original strand, 73820 - 73911
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtcgcaccatcattaatta 340  Q
    ||||||||| ||||| |||| ||||||| || | |||| |||||||||||||||| || || |||||| ||||||| || ||||||||||||    
T  73820 gatcctctctatttggcaaaataaatggtgttttgcaagttggagagagatagacgcaaaatatagatggtgggtcccatcatcattaatta 73911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 396
Target Start/End: Complemental strand, 13792 - 13643
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaa-tagatagtgggtcgcaccatcattaattaatttata 347  Q
    |||| |||||||||| |||| ||||| |||| | || | ||||||||||||||||| | |||| ||||| ||||||| |||||||||||||||  || ||    
T  13792 gatcttctccatttggcaaaataaatagagttttgctagttggagagagatagacaaaaaaaaatagatggtgggtcccaccatcattaattatatttta 13693  T
Q  348 cttattttcaaaaaatt-tgtgt-tttatctcttcaaatagaagaaatgga 396  Q
    ||| ||||||| |  || ||||| ||||||||| ||||| |||||||||||    
T  13692 ctt-ttttcaagattttatgtgtctttatctctccaaattgaagaaatgga 13643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 16360 - 16435
Alignment:
Q  250 gatcctctccatttgacaaattaaatggagtat-gcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    |||||||||| || | |||| |||||||||| | |||| ||||||||||||||||||| |||||| || |||||||    
T  16360 gatcctctccgttaggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaataaatggtgggtc 16435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 324
Target Start/End: Complemental strand, 7226 - 7184
Alignment:
Q  282 tgcaatttggagagagatagacacataaaatagatagtgggtc 324  Q
    ||||| ||||||||||||||||||| ||||||||| |||||||    
T  7226 tgcaagttggagagagatagacacaaaaaatagatggtgggtc 7184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 29528 - 29597
Alignment:
Q  245 gtaaggatcctctccatttgacaaattaaatggagtatgcaatttggagagagatagacacataaaatag 314  Q
    |||| ||||||||||||||   ||| ||||||||  | ||||||| |||||||||||| |||||||||||    
T  29528 gtaacgatcctctccatttataaaaataaatggaaaaagcaatttagagagagatagagacataaaatag 29597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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