View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4969_low_3 (Length: 432)

Name: NF4969_low_3
Description: NF4969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4969_low_3
NF4969_low_3
[»] chr6 (7 HSPs)
chr6 (134-225)||(637675-637766)
chr6 (1-76)||(637540-637615)
chr6 (250-322)||(8150412-8150484)
chr6 (253-298)||(4132602-4132647)
chr6 (267-317)||(16497835-16497887)
chr6 (280-317)||(16517303-16517340)
chr6 (250-306)||(19816178-19816234)
[»] chr4 (4 HSPs)
chr4 (254-323)||(29657711-29657780)
chr4 (250-322)||(55005828-55005900)
chr4 (135-225)||(30254898-30254988)
chr4 (334-377)||(51939514-51939557)
[»] chr7 (2 HSPs)
chr7 (250-315)||(21496192-21496257)
chr7 (250-306)||(6440394-6440450)
[»] chr3 (2 HSPs)
chr3 (250-322)||(4973298-4973370)
chr3 (250-306)||(16074926-16074982)
[»] chr1 (1 HSPs)
chr1 (250-311)||(46546413-46546474)
[»] scaffold0153 (1 HSPs)
scaffold0153 (268-315)||(25574-25621)
[»] chr2 (1 HSPs)
chr2 (271-306)||(25342815-25342850)
[»] chr8 (1 HSPs)
chr8 (273-306)||(7661897-7661930)
[»] chr5 (1 HSPs)
chr5 (173-225)||(11236662-11236714)


Alignment Details
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 637675 - 637766
Alignment:
Q  134 tagacttacacttgttgtgattgtaaggccctcttgaacacttcacctgagatttaaacaaataatatagagttatgaagttatgaaattag 225  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  637675 tagacttacatttgttgtgattgtaaggcccttttgaacacttcacctgagatttaaacaaaaaatatagagttatgaagttatgaaattag 637766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 637540 - 637615
Alignment:
Q  1 ctgaatcaacgtagtatacatttagaaaatgaattcannnnnnngtggcacttcacctaatataaatcacaaggta 76  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  637540 ctgaatcaacgtagtatacatttagaaaatgaattcatttttttgtggcacttcacctaatataaatcacaaggta 637615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 8150484 - 8150412
Alignment:
Q  250 aaccctaaaacaagcaattagagaaggaatgagaaattagagaatcaattggcttactttggcttagagtgag 322  Q
    ||||||||||||||  ||| | |||||||||||||| ||||||||||||||| |||| ||| | |||||||||    
T  8150484 aaccctaaaacaagacattggtgaaggaatgagaaactagagaatcaattggattaccttgacgtagagtgag 8150412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 4132602 - 4132647
Alignment:
Q  253 cctaaaacaagcaattagagaaggaatgagaaattagagaatcaat 298  Q
    |||| ||||||||||| ||||||||| |||||||||||| ||||||    
T  4132602 cctacaacaagcaattggagaaggaaggagaaattagagcatcaat 4132647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 16497835 - 16497887
Alignment:
Q  267 ttagagaaggaat--gagaaattagagaatcaattggcttactttggcttaga 317  Q
    |||||||||||||  ||||||||||||||| ||||||||||| || |||||||    
T  16497835 ttagagaaggaattggagaaattagagaataaattggcttacctttgcttaga 16497887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 16517303 - 16517340
Alignment:
Q  280 gagaaattagagaatcaattggcttactttggcttaga 317  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  16517303 gagaaattagagaatgaattggcttaccttggcttaga 16517340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 19816178 - 19816234
Alignment:
Q  250 aaccctaaaacaagcaattagagaaggaatgagaaattagagaatcaattggcttac 306  Q
    ||||||||||||| ||||| ||||||||| || ||||| ||||||  ||||||||||    
T  19816178 aaccctaaaacaaccaattggagaaggaaggaaaaattggagaatacattggcttac 19816234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 29657780 - 29657711
Alignment:
Q  254 ctaaaacaagcaattagagaaggaatgagaaattagagaatcaattggcttactttggcttagagtgaga 323  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29657780 ctaaagcaagcaattggagaaggaatgagaaattagagaatcaattggcttaccttggcttagagtgaga 29657711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 55005900 - 55005828
Alignment:
Q  250 aaccctaaaacaagcaattagagaaggaatgagaaattagagaatcaattggcttactttggcttagagtgag 322  Q
    |||||||||||||| |||| |||| |||| ||||||||||| ||| ||||||||||| |||||||||||||||    
T  55005900 aaccctaaaacaagaaattggagatggaaggagaaattagaaaatgaattggcttaccttggcttagagtgag 55005828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 30254898 - 30254988
Alignment:
Q  135 agacttacacttgttgtgattgtaaggccctcttgaacacttcacctgagatttaaacaaataatatagagttatgaagttatgaaattag 225  Q
    ||||||||||||| ||||||||||| | ||||||||  || |||||||||||||||||||| |||| |  | ||||||||||| |||||||    
T  30254898 agacttacacttggtgtgattgtaaaggcctcttgagtacatcacctgagatttaaacaaaaaatagaatgatatgaagttataaaattag 30254988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 377
Target Start/End: Original strand, 51939514 - 51939557
Alignment:
Q  334 gatccgtgaaagagattatgttaaaagaacttgtctttgtagca 377  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||||    
T  51939514 gatccgtgagagatattctgttaaaagaacttgtctttgtagca 51939557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 315
Target Start/End: Original strand, 21496192 - 21496257
Alignment:
Q  250 aaccctaaaacaagcaattagagaaggaatgagaaattagagaatcaattggcttactttggctta 315  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| ||||||||    
T  21496192 aaccctaaaacaagcaattggagaatgaatgagaaattagagaatcagttggcttaccttggctta 21496257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 6440394 - 6440450
Alignment:
Q  250 aaccctaaaacaagcaattagagaaggaatgagaaattagagaatcaattggcttac 306  Q
    ||||||||||||||||||| ||||||||| |||| ||| ||||||||| ||||||||    
T  6440394 aaccctaaaacaagcaattggagaaggaaagagagattggagaatcaactggcttac 6440450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 4973370 - 4973298
Alignment:
Q  250 aaccctaaaacaagcaattagagaaggaatgagaaattagagaatcaattggcttactttggcttagagtgag 322  Q
    ||||||||||||||||||| || || ||||||||||||||||||| ||||||||||| ||| || ||||||||    
T  4973370 aaccctaaaacaagcaattggaaaatgaatgagaaattagagaattaattggcttaccttgactaagagtgag 4973298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 16074926 - 16074982
Alignment:
Q  250 aaccctaaaacaagcaattagagaaggaatgagaaattagagaatcaattggcttac 306  Q
    ||||||||||||| ||||| ||||||||| || ||||| ||||||| || |||||||    
T  16074926 aaccctaaaacaatcaattggagaaggaacgaaaaattggagaatcgatgggcttac 16074982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 46546474 - 46546413
Alignment:
Q  250 aaccctaaaacaagcaattagagaaggaatgagaaattagagaatcaattggcttactttgg 311  Q
    ||||| ||||||||||||| ||||| ||||||||||||| ||||||| ||| ||||| ||||    
T  46546474 aacccgaaaacaagcaattggagaatgaatgagaaattaaagaatcagttgacttaccttgg 46546413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 315
Target Start/End: Complemental strand, 25621 - 25574
Alignment:
Q  268 tagagaaggaatgagaaattagagaatcaattggcttactttggctta 315  Q
    |||||||| ||||||||||| |||||||||||||||||| || |||||    
T  25621 tagagaagaaatgagaaattggagaatcaattggcttaccttagctta 25574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 306
Target Start/End: Original strand, 25342815 - 25342850
Alignment:
Q  271 agaaggaatgagaaattagagaatcaattggcttac 306  Q
    |||||||||||||||||||||||| |||||||||||    
T  25342815 agaaggaatgagaaattagagaatgaattggcttac 25342850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 306
Target Start/End: Original strand, 7661897 - 7661930
Alignment:
Q  273 aaggaatgagaaattagagaatcaattggcttac 306  Q
    |||||| |||||||||||||||||||||||||||    
T  7661897 aaggaaggagaaattagagaatcaattggcttac 7661930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 11236714 - 11236662
Alignment:
Q  173 acttcacctgagatttaaacaaataatatagagttatgaagttatgaaattag 225  Q
    ||||||||||||| | |||||||||||| |||| | ||||||||| |||||||    
T  11236714 acttcacctgagaatgaaacaaataatagagagatgtgaagttataaaattag 11236662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University