View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4969_low_4 (Length: 427)
Name: NF4969_low_4
Description: NF4969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4969_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 183 - 411
Target Start/End: Complemental strand, 29947502 - 29947274
Alignment:
| Q |
183 |
ttagaatcatataccttcatttatgtatctctatatgggtgtatgcagatgagaggtagagaaatgtgaaaatgaaagaagttagaaggaaaaataaaat |
282 |
Q |
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| T |
29947502 |
ttagaatcatataccttcatttatgtatctctatatgggtgtatgcagatgagaggtagagaaatgtgaaaatgaaagaagttagaaggaaaaataaaat |
29947403 |
T |
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| Q |
283 |
atggtaagtaagttgaaataagagagaggagataagagagtatgtatggtgcacgaaatcaaataatgcttttgctatgttgagaaaataatgacacaca |
382 |
Q |
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| T |
29947402 |
atggtaagtaagttgaaataagagagaggagataagagagtatgtatggtgcacgaaatcaaataatgcttttgctatgttgagaaaataatgacacaca |
29947303 |
T |
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| Q |
383 |
ctttaataccggaaaatgtgaatcaaaac |
411 |
Q |
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| T |
29947302 |
ctttaataccggaaaatgcgaatcaaaac |
29947274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 29947673 - 29947580
Alignment:
| Q |
13 |
aatatacagaaccatgattattagggtaaaggtaaagagagnnnnnnnnncatagtttaaggagaatcagaagtgaatatccaaggttctagtc |
106 |
Q |
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| T |
29947673 |
aatatacagaaccatgattattagggtaaaggtaaagagagaaaacaaagcatagtttaaggagaatcagaagtgaatatccaaggttctagtc |
29947580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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