View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4969_low_5 (Length: 399)

Name: NF4969_low_5
Description: NF4969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4969_low_5
NF4969_low_5
[»] chr8 (4 HSPs)
chr8 (79-374)||(42991230-42991523)
chr8 (140-333)||(35017979-35018172)
chr8 (58-113)||(26499591-26499646)
chr8 (58-114)||(42508699-42508755)
[»] chr3 (2 HSPs)
chr3 (140-374)||(38213980-38214214)
chr3 (140-374)||(38218199-38218433)
[»] chr4 (6 HSPs)
chr4 (209-277)||(53495383-53495451)
chr4 (209-295)||(53488672-53488758)
chr4 (201-303)||(53492989-53493091)
chr4 (206-303)||(53499286-53499383)
chr4 (206-276)||(53502408-53502478)
chr4 (197-309)||(52591022-52591134)
[»] chr6 (4 HSPs)
chr6 (215-306)||(10411374-10411465)
chr6 (59-114)||(14340939-14340994)
chr6 (245-306)||(10379765-10379826)
chr6 (60-114)||(3181207-3181261)
[»] chr7 (5 HSPs)
chr7 (196-317)||(37188910-37189031)
chr7 (245-309)||(32715057-32715121)
chr7 (245-309)||(32709835-32709899)
chr7 (62-110)||(22388044-22388092)
chr7 (245-309)||(32718435-32718499)
[»] chr2 (4 HSPs)
chr2 (201-309)||(16942648-16942756)
chr2 (201-309)||(17013313-17013421)
chr2 (69-114)||(15377448-15377493)
chr2 (61-114)||(39236628-39236681)


Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 79 - 374
Target Start/End: Original strand, 42991230 - 42991523
Alignment:
Q  79 agttaagtgcttataacacaaacacttatcatataactaaactaacatgttgatatataaatgcagattcttggttgacaacatcccaataaggatcttc 178  Q
    |||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42991230 agttaagtgcttataacacaaacacttatcttataaccaaattaacatgttgatatataactgcagattcttggttgacaacatcccaataaggatcttc 42991329  T
Q  179 aagaatgctgaatcgattggtattcctttcccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtt 278  Q
    |||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  42991330 aagaatgctgaatctattagtattcctttcccaaagaaccaaccgatgagaatatattcaagtctttggaacgctgaagattgggctacaagaggtggtt 42991429  T
Q  279 tggtgaaaactgattggtccaaagcaccatttacagcttactaccgcaatttcaaagctactgaattatcctctgtctcttccacttccttctctg 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  42991430 tggtgaaaactgattggtccaaagcaccatttacagcttactaccgcaatttcaaagctactgaattatc--ctgtctcttccacttccttctctg 42991523  T

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Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 140 - 333
Target Start/End: Original strand, 35017979 - 35018172
Alignment:
Q  140 tgcagattcttggttgacaacatcccaataaggatcttcaagaatgctgaatcgattggtattcctttcccaaagaaccaaccaatgagaatatattcaa 239  Q
    ||||||||||||||||| ||||| ||||||||| | |||||||||| |||||| |||||| ||||||| ||||||||||||||||||||||| ||||| |    
T  35017979 tgcagattcttggttgataacatgccaataagggtattcaagaatgttgaatctattggtgttccttttccaaagaaccaaccaatgagaatctattcca 35018078  T
Q  240 gtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatttacagcttactaccgcaatttcaa 333  Q
    | || ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||    
T  35018079 gcctgtggaatgctgatgattgggccacaagaggtggattggtgaaaactgattggtccaaagcaccctttacagcatactaccgtaatttcaa 35018172  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 26499591 - 26499646
Alignment:
Q  58 tcatgtttgaataaacaactcagttaagtgcttataacacaaacacttatcatata 113  Q
    |||||||||||||||||||| | ||||||||||| |||| || | |||||||||||    
T  26499591 tcatgtttgaataaacaacttaattaagtgcttaaaacataagcgcttatcatata 26499646  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 42508755 - 42508699
Alignment:
Q  58 tcatgtttgaataaacaactcagttaagtgcttataacacaaacacttatcatataa 114  Q
    |||||||||  ||||||||| | |||||||||| ||||| ||||| |||||||||||    
T  42508755 tcatgtttgggtaaacaacttaattaagtgcttctaacataaacatttatcatataa 42508699  T

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Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 140 - 374
Target Start/End: Complemental strand, 38214214 - 38213980
Alignment:
Q  140 tgcagattcttggttgacaacatcccaataaggatcttcaagaatgctgaatcgattggtattcctttcccaaagaaccaaccaatgagaatatattcaa 239  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||    
T  38214214 tgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaa 38214115  T
Q  240 gtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatttacagcttactaccgcaatttcaaagctac 339  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38214114 gtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttcaaagctac 38214015  T
Q  340 tgaattatcctctgtctcttccacttccttctctg 374  Q
    ||| ||||| |||||||||||||||||||||||||    
T  38214014 tgagttatcttctgtctcttccacttccttctctg 38213980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 140 - 374
Target Start/End: Complemental strand, 38218433 - 38218199
Alignment:
Q  140 tgcagattcttggttgacaacatcccaataaggatcttcaagaatgctgaatcgattggtattcctttcccaaagaaccaaccaatgagaatatattcaa 239  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||    
T  38218433 tgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaa 38218334  T
Q  240 gtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatttacagcttactaccgcaatttcaaagctac 339  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38218333 gtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttcaaagctac 38218234  T
Q  340 tgaattatcctctgtctcttccacttccttctctg 374  Q
    ||| ||||| |||||||||||||||||||||||||    
T  38218233 tgagttatcttctgtctcttccacttccttctctg 38218199  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 209 - 277
Target Start/End: Original strand, 53495383 - 53495451
Alignment:
Q  209 ccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggt 277  Q
    |||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  53495383 ccaaagaatcaaccaatgaggatatattcaagtctatggaatgctgatgattgggcaacaagaggtggt 53495451  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 209 - 295
Target Start/End: Complemental strand, 53488758 - 53488672
Alignment:
Q  209 ccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattgg 295  Q
    |||||||| || ||||||||| ||||||||||||| ||||| || ||||||||||| |||||||||||| | |||||||| ||||||    
T  53488758 ccaaagaagcagccaatgagattatattcaagtctatggaatgccgatgattgggcaacaagaggtggtcttgtgaaaacagattgg 53488672  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 303
Target Start/End: Original strand, 53492989 - 53493091
Alignment:
Q  201 ttcctttcccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaa 300  Q
    |||| ||||| || |||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||| ||  | || || || |||||||||||    
T  53492989 ttccattccccaaaaaccaaccaatgaggatatactcaagtctctggaatgctgatgattgggcaacaagaggaggacttgttaagacagattggtccaa 53493088  T
Q  301 agc 303  Q
    |||    
T  53493089 agc 53493091  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 206 - 303
Target Start/End: Original strand, 53499286 - 53499383
Alignment:
Q  206 ttcccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagc 303  Q
    ||||| || |||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||| ||  | || || || ||||||||||||||    
T  53499286 ttccccaaaaaccaaccaatgaggatatactcaagtctctggaatgctgatgattgggcaacaagaggaggacttgttaagacagattggtccaaagc 53499383  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 276
Target Start/End: Original strand, 53502408 - 53502478
Alignment:
Q  206 ttcccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtgg 276  Q
    |||||||||||||||||||||||||||||||||||| | ||||| || ||| | ||||| |||||||||||    
T  53502408 ttcccaaagaaccaaccaatgagaatatattcaagtttgtggaatgcagataactgggcaacaagaggtgg 53502478  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 197 - 309
Target Start/End: Original strand, 52591022 - 52591134
Alignment:
Q  197 ggtattcctttcccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggt 296  Q
    ||||||||||| || || | |||| ||||||| |||||||||||||| ||| | || ||| ||||||| ||||| || ||| | | ||||||||||||||    
T  52591022 ggtattccttttcctaaaagccaagcaatgagtatatattcaagtctttgggatgcagataattgggccacaaggggaggtctagcgaaaactgattggt 52591121  T
Q  297 ccaaagcaccatt 309  Q
    || |||| |||||    
T  52591122 cccaagccccatt 52591134  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 215 - 306
Target Start/End: Original strand, 10411374 - 10411465
Alignment:
Q  215 aaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 306  Q
    ||||||||||||| |||||||   ||  | ||||| |||||||||||||||||||| |||||||||| |||||| |||||||||||||||||    
T  10411374 aaccaaccaatgaaaatatataatagcttatggaatgctgatgattgggctacaaggggtggtttggagaaaacagattggtccaaagcacc 10411465  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 14340994 - 14340939
Alignment:
Q  59 catgtttgaataaacaactcagttaagtgcttataacacaaacacttatcatataa 114  Q
    |||||||| |||||||||| | |||||||||||||||| |||||||||||||||||    
T  14340994 catgtttggataaacaacttaattaagtgcttataacataaacacttatcatataa 14340939  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 10379826 - 10379765
Alignment:
Q  245 tggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 306  Q
    ||||| |||||||||||||| ||||| |||||||| | |||||| |||||||||||||||||    
T  10379826 tggaatgctgatgattgggccacaaggggtggtttagagaaaacagattggtccaaagcacc 10379765  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 3181261 - 3181207
Alignment:
Q  60 atgtttgaataaacaactcagttaagtgcttataacacaaacacttatcatataa 114  Q
    |||||||||||||||||| | ||||| ||||||| |||||||| |||||||||||    
T  3181261 atgtttgaataaacaacttaattaagcgcttatagcacaaacatttatcatataa 3181207  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 317
Target Start/End: Original strand, 37188910 - 37189031
Alignment:
Q  196 tggtattcctttcccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattgg 295  Q
    |||| |||| ||||| || | ||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||  | || || || ||||||    
T  37188910 tggtgttccattccccaaaagccaaccaatgagaatctattctagtctttggaatgctgatgattgggctacaagaggtggacttgttaagacagattgg 37189009  T
Q  296 tccaaagcaccatttacagctt 317  Q
    ||||| || || ||||| ||||    
T  37189010 tccaatgctccttttactgctt 37189031  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 32715057 - 32715121
Alignment:
Q  245 tggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatt 309  Q
    ||||| || ||||||||||| |||||||||||||||| |||||| |||||||| |||||||||||    
T  32715057 tggaatgcagatgattgggccacaagaggtggtttggagaaaacagattggtcaaaagcaccatt 32715121  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 32709835 - 32709899
Alignment:
Q  245 tggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatt 309  Q
    ||||| || ||||||||||| ||||||||||| || | |||||| ||||||||||||||||||||    
T  32709835 tggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcaccatt 32709899  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 22388092 - 22388044
Alignment:
Q  62 gtttgaataaacaactcagttaagtgcttataacacaaacacttatcat 110  Q
    ||||| |||||||||| | ||||| |||||||||| |||||||||||||    
T  22388092 gtttggataaacaacttaattaagcgcttataacataaacacttatcat 22388044  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 32718435 - 32718499
Alignment:
Q  245 tggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatt 309  Q
    ||||| || ||||||||||| ||||| ||||| || |  |||||||||||||| |||||||||||    
T  32718435 tggaatgcagatgattgggccacaaggggtggattagaaaaaactgattggtcaaaagcaccatt 32718499  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 309
Target Start/End: Original strand, 16942648 - 16942756
Alignment:
Q  201 ttcctttcccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaa 300  Q
    ||||||| |||||||||||| | ||||| |||||||||||||| ||||| || ||| ||||||| || ||||||||  | |||||||| |||||| ||||    
T  16942648 ttccttttccaaagaaccaagccatgaggatatattcaagtctttggaatgcagataattgggccactagaggtgggattgtgaaaacagattggaccaa 16942747  T
Q  301 agcaccatt 309  Q
     || |||||    
T  16942748 tgctccatt 16942756  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 309
Target Start/End: Original strand, 17013313 - 17013421
Alignment:
Q  201 ttcctttcccaaagaaccaaccaatgagaatatattcaagtctctggaacgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaa 300  Q
    ||||||| |||||||||||| | ||||| |||||||||||||| ||||| || ||| ||||||| || ||||||||  | |||||||| |||||| ||||    
T  17013313 ttccttttccaaagaaccaagccatgaggatatattcaagtctttggaatgcagataattgggccactagaggtgggattgtgaaaacagattggaccaa 17013412  T
Q  301 agcaccatt 309  Q
     || |||||    
T  17013413 tgctccatt 17013421  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 15377448 - 15377493
Alignment:
Q  69 taaacaactcagttaagtgcttataacacaaacacttatcatataa 114  Q
    ||||||||| | |||||||||||||||| | |||||||||||||||    
T  15377448 taaacaactgaattaagtgcttataacatacacacttatcatataa 15377493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 39236681 - 39236628
Alignment:
Q  61 tgtttgaataaacaactcagttaagtgcttataacacaaacacttatcatataa 114  Q
    ||||||| |||||| || | |||||||||||| ||| |||||||||||||||||    
T  39236681 tgtttgactaaacatcttaattaagtgcttatgacataaacacttatcatataa 39236628  T

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