View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4969_low_6 (Length: 354)
Name: NF4969_low_6
Description: NF4969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4969_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 334
Target Start/End: Complemental strand, 11664116 - 11663793
Alignment:
| Q |
11 |
caaaggatacgccagaagattcccatttcgcaccttctgattcgttgagagagatgggttcgccgtcaaaggagagggcaagacggtctgcagaatcatc |
110 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||| |||||||||| |
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| T |
11664116 |
caaaggataccccagatgattcccatttcgcaccttctgattcgttgagagtgatgggctcaccgtcaaaggagagggcaagacggtctacagaatcatc |
11664017 |
T |
|
| Q |
111 |
ccatgttgatgttttttgggcaccaaggaaaagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatgttctcattt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11664016 |
ccatgttgatgttttttgggcaccaaggaaaagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatgttctcattt |
11663917 |
T |
|
| Q |
211 |
cttctaccgatgaaatgagcattgatgtggaggttgttatcaggaacaaggcagaagttgttgtctttcttgccatggaagtaaaaagtgattccatcac |
310 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11663916 |
cttctacctatgaaatgagcattgatgtggaggttgttatcagaaacaaggcagaagttgttgtctttcttgccatgaaagtaaaaagtgattccatcac |
11663817 |
T |
|
| Q |
311 |
caccaatgaaacgagggtcttggc |
334 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
11663816 |
caccaatgaaacgagggtcttggc |
11663793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 28 - 334
Target Start/End: Original strand, 7344397 - 7344703
Alignment:
| Q |
28 |
gattcccatttcgcaccttctgattcgttgagagagatgggttcgccgtcaaaggagagggcaagacggtctgcagaatcatcccatgttgatgtttttt |
127 |
Q |
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||||||||||||| ||||||||||||| ||| | ||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
7344397 |
gattcccatttcgttccttctgattcgtggagggtgatgggttcaccgtcaaaagagagggcaaggcggtctacagaatcatcccatgttgatgtttttt |
7344496 |
T |
|
| Q |
128 |
gggcaccaaggaaaagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatgttctcatttcttctaccgatgaaatg |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| || |
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| T |
7344497 |
tggcaccaaggaaaagttggtgattgtcaaagagaataacaatggattgtacccatgtgaagtctcttttcatgttcttgtttcttctaccaatgaagtg |
7344596 |
T |
|
| Q |
228 |
agcattgatgtggaggttgttatcaggaacaaggcagaagttgttgtctttcttgccatggaagtaaaaagtgattccatcaccaccaatgaaacgaggg |
327 |
Q |
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||| || ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7344597 |
agcgtttatgtggaggttgttatcggaaacaaggcagaagttgttgtctttcttgccatggaagtaaaaagtgattccatcaccaccaatgaaacgaggg |
7344696 |
T |
|
| Q |
328 |
tcttggc |
334 |
Q |
| |
|
||||||| |
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| T |
7344697 |
tcttggc |
7344703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 334
Target Start/End: Complemental strand, 11669427 - 11669104
Alignment:
| Q |
11 |
caaaggatacgccagaagattcccatttcgcaccttctgattcgttgagagagatgggttcgccgtcaaaggagagggcaagacggtctgcagaatcatc |
110 |
Q |
| |
|
||||||| ||||| || |||||||||||||||||||| ||||||| ||| | ||||||||| ||||||||||||| |||||| || || |||| ||||| |
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| T |
11669427 |
caaaggacacgccggatgattcccatttcgcaccttcagattcgtggagggtgatgggttctccgtcaaaggagatggcaaggcgatccacagagtcatc |
11669328 |
T |
|
| Q |
111 |
ccatgttgatgttttttgggcaccaaggaaaagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatgttctcattt |
210 |
Q |
| |
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|||||| | |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11669327 |
ccatgtggctgttttctgggcaccaaggaagagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatgttctcgttt |
11669228 |
T |
|
| Q |
211 |
cttctaccgatgaaatgagcattgatgtggaggttgttatcaggaacaaggcagaagttgttgtctttcttgccatggaagtaaaaagtgattccatcac |
310 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11669227 |
cttctacctatgaaatgagcattgatgtgtaggtttttgtcagaaacaaggcagaagttgttgtctttcttgccatggaagtaaaaagtgattccatctc |
11669128 |
T |
|
| Q |
311 |
caccaatgaaacgagggtcttggc |
334 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
11669127 |
caccaatgaaacgagggtcttggc |
11669104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 334
Target Start/End: Complemental strand, 11655659 - 11655336
Alignment:
| Q |
11 |
caaaggatacgccagaagattcccatttcgcaccttctgattcgttgagagagatgggttcgccgtcaaaggagagggcaagacggtctgcagaatcatc |
110 |
Q |
| |
|
||||||| ||||| || |||||||||||||||||||| ||||||| ||| | ||||||||| |||||||| |||| |||||| || || |||| ||||| |
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| T |
11655659 |
caaaggacacgccggatgattcccatttcgcaccttcagattcgtggagggtgatgggttctccgtcaaatgagatggcaaggcgatccacagagtcatc |
11655560 |
T |
|
| Q |
111 |
ccatgttgatgttttttgggcaccaaggaaaagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatgttctcattt |
210 |
Q |
| |
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|||||| | |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11655559 |
ccatgtggctgttttctgggcaccaaggaagagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatgttctcgttt |
11655460 |
T |
|
| Q |
211 |
cttctaccgatgaaatgagcattgatgtggaggttgttatcaggaacaaggcagaagttgttgtctttcttgccatggaagtaaaaagtgattccatcac |
310 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11655459 |
cttctacctatgaaatgagcattgatgtgtaggtttttgtcagaaacaaggcagaagttgttgtctttcttgccatggaagtaaaaagtgattccatctc |
11655360 |
T |
|
| Q |
311 |
caccaatgaaacgagggtcttggc |
334 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
11655359 |
caccaatgaaacgagggtcttggc |
11655336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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