View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4969_low_7 (Length: 299)
Name: NF4969_low_7
Description: NF4969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4969_low_7 |
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| [»] scaffold2086 (1 HSPs) |
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| [»] scaffold1996 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 35776775 - 35776501
Alignment:
| Q |
1 |
atgaggtgccaaaattacaaaactgtgatacttaagagaccgaaagtacactcaaattaatcttctaatgtaaaatgtcttcaactaaaagattttaaat |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35776775 |
atgaggtgccaaaattacaaaactatgatacttaagagaccgaaagtacactcaaattaatcttctaatgtaaaatgtcttcaactaaaagattttaaat |
35776676 |
T |
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| Q |
101 |
tattttcagtgacaattatcttgagnnnnnnnnnnnnnnnnnntatttattaaatatttataaacttataacgaacaaattatagaatttgcttgcagca |
200 |
Q |
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||| |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35776675 |
tatcttcagtgacaattatcttca----ttttttttttttaaatatttattaaatatttataaacttataacaaacaaattatagaatttgcttgcagca |
35776580 |
T |
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| Q |
201 |
atattgagataaggttcactatatctttgttctttctgaccgacctccaagcagggcaaatctatatcaccaccgccat |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35776579 |
atattgagataaggttcactatatctttgttctttctgaccgacctccaagcagggcaaatctatatcaccaccgccat |
35776501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 923 - 1023
Alignment:
| Q |
1 |
atgaggtgccaaaattacaaaactgtgatacttaagagaccgaaagtacactcaaattaatcttctaatgtaaaatgtcttcaactaaaagattttaaat |
100 |
Q |
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|||| |||||||||||||| || | ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||| |
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| T |
923 |
atgatgtgccaaaattacacaaatatgatacttaagaggccgaaagtacactcaaattaatcttc-aatgtaaaatgtcttccactaaaatattttaaat |
1021 |
T |
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| Q |
101 |
ta |
102 |
Q |
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|| |
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| T |
1022 |
ta |
1023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 923 - 1023
Alignment:
| Q |
1 |
atgaggtgccaaaattacaaaactgtgatacttaagagaccgaaagtacactcaaattaatcttctaatgtaaaatgtcttcaactaaaagattttaaat |
100 |
Q |
| |
|
|||| |||||||||||||| || | ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||| |
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| T |
923 |
atgatgtgccaaaattacacaaatatgatacttaagaggccgaaagtacactcaaattaatcttc-aatgtaaaatgtcttccactaaaatattttaaat |
1021 |
T |
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| Q |
101 |
ta |
102 |
Q |
| |
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|| |
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|
| T |
1022 |
ta |
1023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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