View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4970-Insertion-1 (Length: 1018)

Name: NF4970-Insertion-1
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4970-Insertion-1
NF4970-Insertion-1
[»] chr2 (31 HSPs)
chr2 (37-957)||(41842677-41843607)
chr2 (79-218)||(20242667-20242801)
chr2 (79-222)||(34784911-34785060)
chr2 (78-217)||(36096303-36096448)
chr2 (79-241)||(37558939-37559096)
chr2 (79-144)||(24009349-24009414)
chr2 (81-223)||(2438661-2438796)
chr2 (79-218)||(11223793-11223937)
chr2 (79-180)||(974770-974870)
chr2 (77-218)||(18840951-18841087)
chr2 (92-222)||(14996172-14996302)
chr2 (79-222)||(15972854-15972992)
chr2 (118-182)||(28524447-28524517)
chr2 (79-175)||(35056896-35056998)
chr2 (78-217)||(38117098-38117232)
chr2 (79-141)||(26769579-26769641)
chr2 (146-183)||(5367212-5367249)
chr2 (138-223)||(12668417-12668502)
chr2 (141-222)||(36756341-36756422)
chr2 (84-144)||(12224277-12224337)
chr2 (80-180)||(28596492-28596587)
chr2 (79-242)||(37419703-37419873)
chr2 (79-144)||(22084756-22084824)
chr2 (109-182)||(28677930-28678003)
chr2 (148-182)||(30471059-30471093)
chr2 (144-182)||(31808098-31808136)
chr2 (144-182)||(39279696-39279734)
chr2 (146-222)||(19536399-19536476)
chr2 (138-175)||(22550246-22550283)
chr2 (79-144)||(42511322-42511387)
chr2 (141-182)||(44860341-44860382)
[»] chr1 (44 HSPs)
chr1 (81-222)||(1486646-1486787)
chr1 (79-241)||(25934572-25934746)
chr1 (80-222)||(10577676-10577813)
chr1 (79-144)||(41597410-41597475)
chr1 (76-240)||(46348320-46348479)
chr1 (79-219)||(37598816-37598950)
chr1 (148-222)||(34315693-34315767)
chr1 (80-141)||(12919002-12919063)
chr1 (76-182)||(47989518-47989630)
chr1 (108-220)||(1815240-1815347)
chr1 (79-182)||(5944304-5944413)
chr1 (79-182)||(9828065-9828174)
chr1 (81-223)||(42359391-42359528)
chr1 (141-182)||(10572586-10572627)
chr1 (79-191)||(30749852-30749959)
chr1 (79-191)||(30771303-30771410)
chr1 (138-182)||(44482251-44482295)
chr1 (80-222)||(6414932-6415079)
chr1 (79-182)||(18337350-18337448)
chr1 (144-182)||(1864880-1864918)
chr1 (79-133)||(9690213-9690267)
chr1 (144-182)||(13997904-13997942)
chr1 (80-182)||(45534131-45534228)
chr1 (118-182)||(20157323-20157388)
chr1 (140-217)||(24577182-24577259)
chr1 (109-182)||(29163351-29163419)
chr1 (79-144)||(32461393-32461458)
chr1 (141-182)||(34371734-34371775)
chr1 (133-182)||(35919265-35919314)
chr1 (93-182)||(40181892-40181976)
chr1 (146-182)||(9709841-9709877)
chr1 (79-182)||(19562556-19562659)
chr1 (77-221)||(22515825-22515964)
chr1 (138-182)||(25361907-25361951)
chr1 (79-182)||(5898206-5898304)
chr1 (79-142)||(6427531-6427594)
chr1 (79-182)||(43492434-43492532)
chr1 (79-182)||(51410046-51410144)
chr1 (140-182)||(7918207-7918249)
chr1 (144-182)||(10233274-10233312)
chr1 (146-183)||(13436478-13436515)
chr1 (79-128)||(15765828-15765877)
chr1 (133-182)||(34712372-34712421)
chr1 (79-144)||(40917814-40917879)
[»] chr3 (27 HSPs)
chr3 (76-217)||(35222924-35223060)
chr3 (66-144)||(25064972-25065050)
chr3 (79-240)||(20503429-20503584)
chr3 (79-195)||(13845465-13845576)
chr3 (79-182)||(27505267-27505370)
chr3 (80-182)||(10690193-10690300)
chr3 (79-182)||(40993275-40993373)
chr3 (79-222)||(55401056-55401194)
chr3 (78-175)||(8039763-8039866)
chr3 (94-222)||(10954933-10955056)
chr3 (108-222)||(28917982-28918093)
chr3 (109-182)||(29508465-29508539)
chr3 (79-222)||(41961579-41961728)
chr3 (77-182)||(17005546-17005657)
chr3 (84-182)||(2941579-2941672)
chr3 (110-220)||(18426932-18427037)
chr3 (80-182)||(8789489-8789588)
chr3 (133-182)||(25948876-25948925)
chr3 (146-182)||(7928471-7928507)
chr3 (138-238)||(14209079-14209178)
chr3 (77-182)||(34185050-34185161)
chr3 (79-182)||(7171522-7171620)
chr3 (150-189)||(8930836-8930875)
chr3 (80-150)||(15864880-15864950)
chr3 (146-189)||(38731232-38731275)
chr3 (79-144)||(15796223-15796288)
chr3 (141-241)||(28812477-28812577)
[»] chr6 (33 HSPs)
chr6 (78-240)||(28152062-28152218)
chr6 (81-222)||(12696305-12696446)
chr6 (79-182)||(17327590-17327693)
chr6 (78-211)||(16488518-16488657)
chr6 (79-211)||(18367828-18367966)
chr6 (79-222)||(34595115-34595253)
chr6 (79-222)||(8365448-8365597)
chr6 (79-182)||(33001229-33001327)
chr6 (79-218)||(16766682-16766827)
chr6 (92-182)||(24138447-24138537)
chr6 (80-241)||(17841530-17841686)
chr6 (109-222)||(3398600-3398712)
chr6 (129-218)||(10770659-10770748)
chr6 (80-217)||(5626641-5626769)
chr6 (134-182)||(9025484-9025532)
chr6 (134-181)||(9027200-9027247)
chr6 (108-222)||(9658860-9658969)
chr6 (79-144)||(3209453-3209518)
chr6 (133-182)||(7086816-7086865)
chr6 (146-182)||(7027263-7027299)
chr6 (146-182)||(7265595-7265631)
chr6 (138-182)||(9522912-9522956)
chr6 (79-143)||(13789209-13789273)
chr6 (79-143)||(13797828-13797892)
chr6 (138-182)||(26562710-26562754)
chr6 (79-182)||(13364645-13364743)
chr6 (77-144)||(24645535-24645602)
chr6 (159-244)||(17302515-17302601)
chr6 (79-128)||(4388150-4388199)
chr6 (140-185)||(9911524-9911569)
chr6 (79-144)||(10339054-10339119)
chr6 (145-222)||(16833289-16833366)
chr6 (129-182)||(19040373-19040421)
[»] chr5 (29 HSPs)
chr5 (77-211)||(30098976-30099105)
chr5 (80-222)||(6401479-6401627)
chr5 (78-211)||(21814253-21814392)
chr5 (81-242)||(43001761-43001922)
chr5 (92-182)||(23015937-23016027)
chr5 (79-217)||(31084309-31084447)
chr5 (79-178)||(14873542-14873641)
chr5 (79-182)||(21576685-21576783)
chr5 (79-182)||(28588614-28588712)
chr5 (79-182)||(39205901-39206004)
chr5 (79-222)||(21522731-21522880)
chr5 (79-222)||(21533297-21533446)
chr5 (81-222)||(21190998-21191134)
chr5 (79-144)||(27932289-27932354)
chr5 (78-220)||(39698524-39698672)
chr5 (143-196)||(39758279-39758332)
chr5 (79-182)||(42029773-42029871)
chr5 (132-182)||(38749551-38749601)
chr5 (81-182)||(30502330-30502426)
chr5 (81-182)||(30542673-30542769)
chr5 (134-182)||(2436943-2436991)
chr5 (149-241)||(14674231-14674323)
chr5 (135-182)||(6471880-6471927)
chr5 (92-182)||(15382500-15382591)
chr5 (79-182)||(43564902-43565000)
chr5 (140-182)||(3966524-3966566)
chr5 (84-174)||(26312798-26312883)
chr5 (146-196)||(32426871-32426921)
chr5 (140-182)||(41091253-41091295)
[»] chr7 (25 HSPs)
chr7 (79-222)||(18212973-18213112)
chr7 (79-218)||(5409771-5409910)
chr7 (77-182)||(32093952-32094058)
chr7 (82-196)||(39138451-39138560)
chr7 (79-182)||(1433475-1433578)
chr7 (79-182)||(9778521-9778624)
chr7 (79-182)||(43027404-43027507)
chr7 (92-222)||(13770672-13770802)
chr7 (80-162)||(20545185-20545267)
chr7 (79-241)||(15680771-15680928)
chr7 (79-166)||(21138931-21139018)
chr7 (77-182)||(5835268-5835368)
chr7 (146-190)||(640126-640170)
chr7 (138-182)||(15902843-15902887)
chr7 (139-182)||(22602705-22602748)
chr7 (79-182)||(24339663-24339772)
chr7 (158-203)||(1656676-1656721)
chr7 (110-175)||(7758350-7758415)
chr7 (134-182)||(5548697-5548745)
chr7 (134-182)||(16341517-16341565)
chr7 (79-143)||(21864863-21864927)
chr7 (140-222)||(18013070-18013152)
chr7 (80-182)||(32287404-32287501)
chr7 (79-144)||(598262-598327)
chr7 (145-182)||(17851452-17851489)
[»] chr8 (26 HSPs)
chr8 (79-182)||(26902104-26902213)
chr8 (79-241)||(36450694-36450851)
chr8 (76-178)||(16641906-16642008)
chr8 (78-144)||(34450960-34451026)
chr8 (79-198)||(18964182-18964309)
chr8 (80-182)||(43737752-43737849)
chr8 (79-144)||(8343381-8343446)
chr8 (79-220)||(15816058-15816205)
chr8 (79-182)||(24858033-24858135)
chr8 (81-182)||(3025572-3025668)
chr8 (81-144)||(926730-926793)
chr8 (146-241)||(14134661-14134756)
chr8 (79-222)||(22651957-22652106)
chr8 (79-222)||(29510233-29510382)
chr8 (141-182)||(11803280-11803321)
chr8 (141-182)||(11927083-11927124)
chr8 (133-182)||(34222968-34223017)
chr8 (146-182)||(4786340-4786376)
chr8 (146-182)||(8847277-8847313)
chr8 (79-182)||(3951476-3951574)
chr8 (142-189)||(22493508-22493555)
chr8 (79-182)||(11944686-11944795)
chr8 (200-242)||(31109574-31109616)
chr8 (144-189)||(3677800-3677845)
chr8 (79-128)||(8343037-8343086)
chr8 (109-178)||(33405354-33405418)
[»] chr4 (33 HSPs)
chr4 (78-222)||(5414100-5414250)
chr4 (79-182)||(36635345-36635449)
chr4 (79-222)||(19482649-19482798)
chr4 (79-241)||(19097835-19097995)
chr4 (78-222)||(23292925-23293064)
chr4 (80-182)||(3947702-3947804)
chr4 (80-182)||(30982808-30982916)
chr4 (619-707)||(24399079-24399167)
chr4 (78-182)||(46083919-46084029)
chr4 (92-182)||(49431047-49431132)
chr4 (78-222)||(12797277-12797415)
chr4 (79-182)||(12895214-12895312)
chr4 (136-182)||(15659752-15659798)
chr4 (79-182)||(22234819-22234928)
chr4 (447-521)||(24399405-24399479)
chr4 (77-223)||(35157923-35158064)
chr4 (79-182)||(715545-715645)
chr4 (79-182)||(752871-752971)
chr4 (77-182)||(28964186-28964286)
chr4 (79-240)||(12895055-12895211)
chr4 (79-182)||(18513175-18513279)
chr4 (146-182)||(18576039-18576075)
chr4 (79-139)||(29205527-29205587)
chr4 (146-222)||(40179638-40179714)
chr4 (124-208)||(54580008-54580087)
chr4 (82-182)||(28084543-28084640)
chr4 (146-239)||(30298910-30299004)
chr4 (146-239)||(30327778-30327872)
chr4 (78-143)||(5654502-5654567)
chr4 (109-182)||(29205465-29205533)
chr4 (79-144)||(34306744-34306809)
chr4 (149-182)||(40613471-40613504)
chr4 (79-144)||(47264051-47264116)
[»] scaffold0171 (1 HSPs)
scaffold0171 (129-182)||(23441-23494)
[»] scaffold0306 (1 HSPs)
scaffold0306 (81-222)||(13381-13523)
[»] scaffold0152 (1 HSPs)
scaffold0152 (81-222)||(21804-21946)
[»] scaffold0003 (1 HSPs)
scaffold0003 (79-222)||(241575-241724)
[»] scaffold0227 (1 HSPs)
scaffold0227 (79-124)||(15045-15090)
[»] scaffold0050 (1 HSPs)
scaffold0050 (82-182)||(70299-70394)
[»] scaffold0020 (1 HSPs)
scaffold0020 (134-182)||(135302-135350)
[»] scaffold0123 (1 HSPs)
scaffold0123 (79-182)||(44454-44563)
[»] scaffold0793 (1 HSPs)
scaffold0793 (79-182)||(4821-4921)
[»] scaffold0036 (1 HSPs)
scaffold0036 (81-182)||(9678-9785)
[»] scaffold0110 (1 HSPs)
scaffold0110 (135-182)||(28871-28918)
[»] scaffold0083 (1 HSPs)
scaffold0083 (74-177)||(45465-45563)
[»] scaffold0652 (1 HSPs)
scaffold0652 (80-182)||(403-500)
[»] scaffold0512 (1 HSPs)
scaffold0512 (79-144)||(4976-5041)
[»] scaffold0019 (1 HSPs)
scaffold0019 (79-144)||(71790-71855)


Alignment Details
Target: chr2 (Bit Score: 795; Significance: 0; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 795; E-Value: 0
Query Start/End: Original strand, 37 - 957
Target Start/End: Complemental strand, 41843607 - 41842677
Alignment:
Q  37 ttatcgttgataaaatcaaaagttagaaaatcaaaatgaaaactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtg 136  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||| |    
T  41843607 ttatcattgataaaatcaaaagttagaaaatagaaatgaaaactatgaagcacagacactcctcggataaagcgtgtccccgtgtcggacacgtgtcgcg 41843508  T
Q  137 tccgacacaacaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgctt 236  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41843507 tccgacacaacaccgacacatataattataccgaattatgtgatttcctaaaaaatttagttttgtcggcgtgtcagtgtccgtgttcatatccgtgctt 41843408  T
Q  237 catagaatgaaaagcaatataattaatatttatgatgatgatgatga------gaaggtaaaagaaatagtaaggttgaccagtgnnnnnnntcttgtcc 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||       ||||||||    
T  41843407 catagaatgaaaagcaatataattaatatttatgatgatgatgatgatagtgagaaggtaaaagaaatagtaaggttgaccagtgaaaaaaatcttgtcc 41843308  T
Q  331 cattttttatgtaggaggtgctctccaatctgtggtccaccttcaatgatcttaatgccattattgtccaaataatttggtagaacagtggctagaagag 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41843307 cattttttatgtaggaggtgctctccaatctgtggtccaccttcaatgatcttaatgccattattgtccaaataatttggtagaacagtggctagaagag 41843208  T
Q  431 aagaagaagtaggggccaactctgaaggttttagtactgcaacatttccagcagctatggctccaattaatggctccaaggacagtcctgttcataaaac 530  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41843207 aagaagaagtaggggccaactctgaaggttttaggactgcaacatttccagcagctatggctccaattaatggctccaaggacagtcctgttcataaaac 41843108  T
Q  531 caaccatatcttgttgatattgtaaccaagagaggcaccactttgcacttgatttctttatagatttaatatactaaaactttattttactcaccaaaag 630  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  41843107 caaccatatcttgttgatattgtaaccaagagaggcaccactttgcacttgatttctttatagatttaatatactaaaactttattttactcaccaaagg 41843008  T
Q  631 gaaaattccatgatgagattatgaggactagaccaagaggctcagcaacaatttctgcacttgaaagtagtgctatttggggcagtttagcctgttaagt 730  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41843007 gaaaattccatgatgagattatgaggactagaccaagaggctcagcaacaatttctgcacttgaaagtagtgctatttggggcagtttagcctgttaagt 41842908  T
Q  731 tgaaaataataaggcataacaataaagtatatagttatggaattccttaatttcatgtaaaagtatggtgcaattgttcttattttcaataaactaaata 830  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41842907 tgaaaataataaggcataacaataaagtatatagttatggaattctttaatttcatgtaaaagtatggtgcaattgttcttattttcaataaactaagta 41842808  T
Q  831 taatggaaatataaaatatacttttctcatttgttttgcctgtgttgtacatatataaactaacctctttaccagccatccat-ttttgaaggactttat 929  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41842807 taatggaaatataaaatatacttttctcatttgttttgcatgtgttgtacatatataaactaacctctttaccagccatccattttttgaaggactttat 41842708  T
Q  930 tgcc-aatc-atgga-ttttttaacgttcca 957  Q
    |||| |||| ||||| |||||||||||||||    
T  41842707 tgccaaatcaatggatttttttaacgttcca 41842677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 20242667 - 20242801
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||| ||||||||||||||| |||||||| |||||||||||||||| |||||||     |||||||||||||||||||||| ||||||||||    
T  20242667 ctatgaagcacagacactcttcggataaggcgtgtcctcgtgtcagacacgtgttgtgtccg-----acaccgacacatataattacactgaattatgtg 20242761  T
Q  179 atttcttaaaaaatttagttttgtcagcgtgtcagtgtcc 218  Q
    ||||  ||||||| |||||| |||| ||||||||||||||    
T  20242762 attttctaaaaaaattagttgtgtcggcgtgtcagtgtcc 20242801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 34784911 - 34785060
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccga------cacaacaccgacacatataattacaccgaat 172  Q
    |||||||||||| |||||| ||| |||| |||||||||||||||||||| |||||||||||||      ||| ||||||||||||||||||||||  |||    
T  34784911 ctatgaagcacagacactcctcgaataaggcgtgtccccgtgtcagacaggtgtcgtgtccgataccgacacgacaccgacacatataattacactaaat 34785010  T
Q  173 tatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    ||||||||||  ||||||| |||||| |||| | ||||||||||||||||    
T  34785011 tatgtgattttctaaaaaaattagttgtgtcggtgtgtcagtgtccgtgt 34785060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 78 - 217
Target Start/End: Original strand, 36096303 - 36096448
Alignment:
Q  78 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtc------cgacacaacaccgacacatataattacaccgaa 171  Q
    ||||||||||||  |||||||| || ||| |||||||||||||||||||||||||||||||      |||||| ||||||||| |||||||||||| | |    
T  36096303 actatgaagcacggacactctttggttaaggcgtgtccccgtgtcagacacgtgtcgtgtccgacatcgacacgacaccgacaaatataattacactgca 36096402  T
Q  172 ttatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtc 217  Q
    || ||||||||  |||||||||||| | |||| ||||||| |||||    
T  36096403 ttttgtgattttctaaaaaatttagctgtgtcggcgtgtccgtgtc 36096448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 79 - 241
Target Start/End: Complemental strand, 37559096 - 37558939
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||  |||||| |||||| |||||||| || ||||| ||||||||||  |||||     |||||||||| | ||||||||  ||||||||||    
T  37559096 ctatgaagcacggacactcctcggattaagcgtgtaccggtgtcggacacgtgtcaagtccg-----acaccgacacttgtaattacattgaattatgtg 37559002  T
Q  179 atttcttaaaaaat-ttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcatag 241  Q
    |||| ||| ||| | |||| | |||| |||||||||||||||||| | ||||||||||||||||    
T  37559001 attt-ttacaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgcttcatag 37558939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 24009414 - 24009349
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 144  Q
    |||||||||||  |||||| | |||||| |||||||||||||||||||||||||||||||||||||    
T  24009414 ctatgaagcacggacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacac 24009349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 223
Target Start/End: Original strand, 2438661 - 2438796
Alignment:
Q  81 atgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgat 180  Q
    |||||||||  |||||| |||||| | ||||||||| ||||| |||| ||||||||||||     |||||||||| | ||||||||| ||||||||||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccg-----acaccgacacttgtaattacactgaattatgtgat 2438755  T
Q  181 ttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgtt 223  Q
    || || |||   |||| | |||||||  |||||||||||||||    
T  2438756 tttttgaaattattagctgtgtcagc--gtcagtgtccgtgtt 2438796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 11223793 - 11223937
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac------aacaccgacacatataattacaccgaat 172  Q
    |||||||||||  |||||| || ||| | ||||||||| |||||||||| ||||||||||||||||       |||||||||| | ||||||||| ||||    
T  11223793 ctatgaagcacggacactcctcagattaggcgtgtcccggtgtcagaca-gtgtcgtgtccgacacctacatgacaccgacacttgtaattacactgaat 11223891  T
Q  173 tatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtcc 218  Q
    ||||| |||| || ||||  |||| | |||||||||||| ||||||    
T  11223892 tatgttattttttcaaaatattagctgtgtcagcgtgtctgtgtcc 11223937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 180
Target Start/End: Complemental strand, 974870 - 974770
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||| |||| |  ||||| |||||||||||  ||| |||||| |||||||||| |||| |||||||||| | ||||||||| |||| |||||    
T  974870 ctatgaagcacagacaccccccggattaagcgtgtcccgttgt-agacacatgtcgtgtccaacacgacaccgacacttgtaattacactgaataatgtg 974772  T
Q  179 at 180  Q
    ||    
T  974771 at 974770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 218
Target Start/End: Original strand, 18840951 - 18841087
Alignment:
Q  77 aactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatg 176  Q
    |||||||||||||  |||||| |||||| | | ||||||| ||||| |||| |||||||||| |     |||||||||| | |||||||||  |||||||    
T  18840951 aactatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacatgtgtcgtgtctg-----acaccgacacttgtaattacacttaattatg 18841045  T
Q  177 tgatttcttaaaaaatttagttttgtcagcgtgtcagtgtcc 218  Q
    | |||| || |||   |||||| |||||||||||||||||||    
T  18841046 taattttttcaaattattagttgtgtcagcgtgtcagtgtcc 18841087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 222
Target Start/End: Original strand, 14996172 - 14996302
Alignment:
Q  92 acactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgatttcttaaaaaa 191  Q
    |||||| |||||| | |||||| || ||||||||||||||| ||||||||||  |||||||||| | |||||||||  |||||| |||||| ||  |||     
T  14996172 acactcctcggattaggcgtgttccggtgtcagacacgtgt-gtgtccgacaagacaccgacacttgtaattacactaaattatatgatttttttcaaat 14996270  T
Q  192 t-ttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    | |||| | |||| || |||||||||||||||    
T  14996271 tattagctgtgtcggcttgtcagtgtccgtgt 14996302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 15972992 - 15972854
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||  ||| ||||||||| | | ||||||| | ||| |||||||||||||||||     |||||||||| | ||||||||| ||||| |||     
T  15972992 ctatgaagcacggacattcttcggattaggtgtgtcccggcgtcggacacgtgtcgtgtccg-----acaccgacacttgtaattacactgaattgtgta 15972898  T
Q  179 atttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    |||| || |||   ||| || |||| ||||||||||||||||||    
T  15972897 attttttcaaattattaattgtgtcggcgtgtcagtgtccgtgt 15972854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 28524517 - 28524447
Alignment:
Q  118 gtgtcagacacgtgtcgtgtccgacac------aacaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||||||||||||| |||||||||||      |||| |||||||||||||||||| ||||||||||||||    
T  28524517 gtgtcagacacgtgttgtgtccgacaccaacacaacaacgacacatataattacactgaattatgtgattt 28524447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 35056998 - 35056896
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacaca------acaccgacacatataattacaccgaat 172  Q
    |||||||||||  |||||| || ||| | ||||||  ||||||| |||||||||||||||||||||       |||||||||||||||||||||| ||||    
T  35056998 ctatgaagcacggacactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaat 35056899  T
Q  173 tat 175  Q
    |||    
T  35056898 tat 35056896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 217
Target Start/End: Original strand, 38117098 - 38117232
Alignment:
Q  78 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgt 177  Q
    ||||||||||||  |||| | |||||| | ||||||||| ||||| ||||||||| ||||||||||| |     |||| | ||||||||||||| |||||    
T  38117098 actatgaagcacggacacccctcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacacca-----acacttgtaattacaccgaagtatgt 38117192  T
Q  178 gatttcttaaaaaatttagttttgtcagcgtgtcagtgtc 217  Q
    ||||| || |||   |||| | |||| |||||||||||||    
T  38117193 gattttttcaaattattagctgtgtcggcgtgtcagtgtc 38117232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 26769641 - 26769579
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccga 141  Q
    |||||||||||  |||||| |||||| | ||||||||| ||||| ||||||||||||||||||    
T  26769641 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccga 26769579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 5367249 - 5367212
Alignment:
Q  146 acaccgacacatataattacaccgaattatgtgatttc 183  Q
    |||||||||||||||||||||| |||||||||||||||    
T  5367249 acaccgacacatataattacactgaattatgtgatttc 5367212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 12668417 - 12668502
Alignment:
Q  138 ccgacacaacaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgtt 223  Q
    ||||||| |||||||||| ||||||||||| ||||||||| |||| || |||   |||||| |||| |||||||||| || |||||    
T  12668417 ccgacacgacaccgacacttataattacactgaattatgtcattttttcaaattattagttatgtcggcgtgtcagtatctgtgtt 12668502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 36756341 - 36756422
Alignment:
Q  141 acacaacaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    |||| |||||||||| ||||||||||| ||||||||| ||||||| |||   |||||| ||||  |||||||||||| ||||    
T  36756341 acacgacaccgacacttataattacactgaattatgttatttcttcaaattattagttgtgtcgacgtgtcagtgtctgtgt 36756422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 12224337 - 12224277
Alignment:
Q  84 aagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 144  Q
    |||||||||||||| | |||| | ||||||||| ||||| ||||||| |||||||||||||    
T  12224337 aagcacaaacactccttggattaggcgtgtcccagtgtcggacacgtatcgtgtccgacac 12224277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 180
Target Start/End: Complemental strand, 28596587 - 28596492
Alignment:
Q  80 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtga 179  Q
    ||||||||||  |||||| |||||| | | ||||||  ||||| |||||||||||||||||     |||||||||| ||||||||||| || ||||||||    
T  28596587 tatgaagcacggacactcctcggattaggagtgtccgagtgtcggacacgtgtcgtgtccg-----acaccgacacttataattacactgacttatgtga 28596493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 242
Target Start/End: Complemental strand, 37419873 - 37419703
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccg------acacaacaccgacacatataattacaccgaat 172  Q
    |||||||||||  |||||| |||||| | ||||||||| ||||| ||||||  |||||||||      |||| |||||| ||| | ||||||||| ||||    
T  37419873 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatcgtgtccgacaccgacacgacaccggcacttgtaattacactgaat 37419774  T
Q  173 tatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtcc-gtgttcatatccgtgcttcataga 242  Q
    | |||||||| || |||   || |   |||| |||||||||||||| |||| | |||||||||||||||||    
T  37419773 tttgtgattttttcaaattatttgccatgtcggcgtgtcagtgtccggtgtccgtatccgtgcttcataga 37419703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 22084756 - 22084824
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtg---tcagacacgtgtcgtgtccgacac 144  Q
    |||||||||||| |||||| |||||| | ||||||||| |||   |||||||||||| |||||||||||    
T  22084756 ctatgaagcacagacactcatcggattaggcgtgtcccggtggtgtcagacacgtgttgtgtccgacac 22084824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 28678003 - 28677930
Alignment:
Q  109 cgtgtccccgtgtcagacacgtgtcgtgtccgacaca-acaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||||| ||||| ||||| ||||||||  |||||  ||||||| |||||||||||||| ||||||||||||||    
T  28678003 cgtgtccctgtgtcggacacttgtcgtgtttgacaccgacaccga-acatataattacactgaattatgtgattt 28677930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 30471093 - 30471059
Alignment:
Q  148 accgacacatataattacaccgaattatgtgattt 182  Q
    ||||||||||||||||||| |||||||||||||||    
T  30471093 accgacacatataattacatcgaattatgtgattt 30471059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 31808136 - 31808098
Alignment:
Q  144 caacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  31808136 caacactgacacatataattacactgaattatgtgattt 31808098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 39279734 - 39279696
Alignment:
Q  144 caacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  39279734 caacaccgacacatataattacactgaattatttgattt 39279696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 19536399 - 19536476
Alignment:
Q  146 acaccgacacatataattacaccgaattatgtgatttcttaaaaaat-ttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    |||||||||| | ||||||||| |||||||||||||| ||  ||| | |||||| |||| |||||||| |||||||||    
T  19536399 acaccgacacttgtaattacactgaattatgtgatttttttcaaattattagttgtgtcggcgtgtcattgtccgtgt 19536476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 22550246 - 22550283
Alignment:
Q  138 ccgacacaacaccgacacatataattacaccgaattat 175  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  22550246 ccgacacaacactgacacatataattacactgaattat 22550283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 42511322 - 42511387
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 144  Q
    |||||||||||  |||||| |||||| |  |||||||| ||||| ||||||||| |||||||||||    
T  42511322 ctatgaagcacggacactcctcggattagccgtgtccctgtgtcggacacgtgttgtgtccgacac 42511387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 44860382 - 44860341
Alignment:
Q  141 acacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||| |||||||||||||||||||||| |||||||| |||||    
T  44860382 acacgacaccgacacatataattacactgaattatgcgattt 44860341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 2e-33; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 81 - 222
Target Start/End: Original strand, 1486646 - 1486787
Alignment:
Q  81 atgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgat 180  Q
    |||||||||| |||||| |||||| | ||||||||| ||||| ||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  1486646 atgaagcacagacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacacgacaccgacacttataattacactgaattatgtgat 1486745  T
Q  181 ttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    || || |||   |||| | ||||||||||||||| |||||||    
T  1486746 tttttcaaattattagctgtgtcagcgtgtcagtatccgtgt 1486787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 79 - 241
Target Start/End: Complemental strand, 25934746 - 25934572
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccg------acacaacaccgacacatataattacaccgaat 172  Q
    |||||||||||  |||||| | |||||| |||| ||||||||||||||||||||||||||||      |||| | |||||||||||||||||||| | ||    
T  25934746 ctatgaagcacggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacaccgacacgataccgacacatataattacactgtat 25934647  T
Q  173 tatgtgatttcttaaaaaatttagttttgtcagcgtgtca------gtgtccgtgttcatatccgtgcttcatag 241  Q
    | ||||||||  || ||||||||| | |||| ||||||||      |||||||||| | ||||||||||||||||    
T  25934646 tttgtgattttctagaaaatttagctgtgtcggcgtgtcatgtccggtgtccgtgtccgtatccgtgcttcatag 25934572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 80 - 222
Target Start/End: Original strand, 10577676 - 10577813
Alignment:
Q  80 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtga 179  Q
    ||||||||||  |||||| | |||||| |||||||||||||||||||||| ||||||||||      | ||||||||||||||||||| | ||| |||||    
T  10577676 tatgaagcacggacactccttggataaggcgtgtccccgtgtcagacacgcgtcgtgtccg-----cccccgacacatataattacactgcattttgtga 10577770  T
Q  180 tttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    |||  ||||||| |||| | |||| ||||||| ||||||||||    
T  10577771 ttttctaaaaaaattagctgtgtcggcgtgtcggtgtccgtgt 10577813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 41597410 - 41597475
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 144  Q
    |||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||||    
T  41597410 ctatgaagcacagacactccttggataaagcgtatccccgtgtcagacacgtgtcgtgtccgacac 41597475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 76 - 240
Target Start/End: Original strand, 46348320 - 46348479
Alignment:
Q  76 aaactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattat 175  Q
    ||||||||||||||  |||| | |||||| | ||||||| | ||||| |||||||||||||||||||||     |||||| | |||||||||  ||||||    
T  46348320 aaactatgaagcacggacacacctcggatcaggcgtgtctcggtgtcggacacgtgtcgtgtccgacac-----cgacacttgtaattacactaaattat 46348414  T
Q  176 gtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcata 240  Q
     |||||| || |||   |||| | |||| |||||||||||||||||| | |||||||||||||||    
T  46348415 atgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgcttcata 46348479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 37598950 - 37598816
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||  |||||| |||||| | |||||||||  |||| |||||||||||||||||     |||||||||| ||||||||||| ||||| ||||    
T  37598950 ctatgaagcacggacactcctcggattaggcgtgtcccattgtcggacacgtgtcgtgtccg-----acaccgacacttataattacactgaatt-tgtg 37598857  T
Q  179 atttcttaaaaaatttagttttgtcagcgtgtcagtgtccg 219  Q
    |||| || |||   |||||| |||| |||||||||||||||    
T  37598856 attttttcaaattattagttgtgtcggcgtgtcagtgtccg 37598816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 222
Target Start/End: Complemental strand, 34315767 - 34315693
Alignment:
Q  148 accgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||||| | |||| || ||||||| |||||||    
T  34315767 accgacacatataattacaccgaattatgtagttttttaaaaaatttagctgtgtcggcatgtcagtatccgtgt 34315693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 12919063 - 12919002
Alignment:
Q  80 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccga 141  Q
    |||||||||| ||||||  ||||||||  |||||||||||||||||||||||||||||||||    
T  12919063 tatgaagcacgaacacttctcggataagccgtgtccccgtgtcagacacgtgtcgtgtccga 12919002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 182
Target Start/End: Complemental strand, 47989630 - 47989518
Alignment:
Q  76 aaactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccg------acacaacaccgacacatataattacaccg 169  Q
    ||||||||||||||  |||||| |||||| | |||||||||  ||||||||| ||||||||||||      |||| |||||||||| | ||||||||| |    
T  47989630 aaactatgaagcacggacactcctcggattaggcgtgtcccgatgtcagacatgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactg 47989531  T
Q  170 aattatgtgattt 182  Q
    |||||||||||||    
T  47989530 aattatgtgattt 47989518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 220
Target Start/End: Complemental strand, 1815347 - 1815240
Alignment:
Q  108 gcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcg 207  Q
    ||||||||| ||||| |||| |||||||||| |||||     |||||| | ||||||||| |||||||||||||| |||||| | ||| || |||| |||    
T  1815347 gcgtgtcccggtgtcggacatgtgtcgtgtcggacac-----cgacacttgtaattacactgaattatgtgattttttaaaataattatttgtgtcggcg 1815253  T
Q  208 tgtcagtgtccgt 220  Q
    |||||||||||||    
T  1815252 tgtcagtgtccgt 1815240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 5944413 - 5944304
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccg------acacaacaccgacacatataattacaccgaat 172  Q
    ||||||||||| ||||||| |||||| | |||| |||| ||||| |||| |||| |||||||      |||| |||||||||| ||||||||||| ||||    
T  5944413 ctatgaagcacgaacactcctcggattaggcgtatcccggtgtcggacatgtgttgtgtccgtcatcgacacgacaccgacacttataattacactgaat 5944314  T
Q  173 tatgtgattt 182  Q
    ||||||||||    
T  5944313 tatgtgattt 5944304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 9828174 - 9828065
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacaca------acaccgacacatataattacaccgaat 172  Q
    |||||||||||  |||||| |||||| |  |||||||| ||||| ||||||||||||||| |||||       ||||||||||||| |||||||| ||||    
T  9828174 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtcgtgtctgacacggacacgacaccgacacataaaattacactgaat 9828075  T
Q  173 tatgtgattt 182  Q
    ||||||||||    
T  9828074 tatgtgattt 9828065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 223
Target Start/End: Original strand, 42359391 - 42359528
Alignment:
Q  81 atgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgat 180  Q
    |||||||||  |||||| |||||| | ||||||||| ||||| |||||  ||| ||||||||||     |||||| | ||||||||| ||||| ||||||    
T  42359391 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacacgtcttgtccgacac-----cgacacttgtaattacactgaattttgtgat 42359485  T
Q  181 ttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgtt 223  Q
    || || |||   |||| | ||||||||||||||||||||||||    
T  42359486 tttttcaaattattagatgtgtcagcgtgtcagtgtccgtgtt 42359528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 10572586 - 10572627
Alignment:
Q  141 acacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  10572586 acacaacaccgacacatttaattacaccgaattatgtgattt 10572627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 191
Target Start/End: Complemental strand, 30749959 - 30749852
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    ||||||||||   |||||| ||| |||| |||| ||| ||||||| |||| ||| |||||||||||     |||||||||||||||||| ||||||||||    
T  30749959 ctatgaagcatggacactcctcgaataatgcgtatcctcgtgtcaaacacatgtggtgtccgacac-----cgacacatataattacactgaattatgtg 30749865  T
Q  179 atttcttaaaaaa 191  Q
    ||||  |||||||    
T  30749864 attttctaaaaaa 30749852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 191
Target Start/End: Complemental strand, 30771410 - 30771303
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    ||||||||||   |||||| ||| |||| |||| ||| ||||||| |||| ||| |||||||||||     |||||||||||||||||| ||||||||||    
T  30771410 ctatgaagcatggacactcctcgaataatgcgtatcctcgtgtcaaacacatgtggtgtccgacac-----cgacacatataattacactgaattatgtg 30771316  T
Q  179 atttcttaaaaaa 191  Q
    ||||  |||||||    
T  30771315 attttctaaaaaa 30771303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 44482295 - 44482251
Alignment:
Q  138 ccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||    
T  44482295 ccgacacgacaccgacacatataattacactgaattatgtgattt 44482251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 222
Target Start/End: Original strand, 6414932 - 6415079
Alignment:
Q  80 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgac-----acaacaccgacacatataattacaccgaatta 174  Q
    ||||||||||  |||||| |||||| ||  ||||| | |||||||||||||||||||||||||     |  |||||||||||| |||||| || | ||||    
T  6414932 tatgaagcacggacactcctcggatgaaatgtgtcgcggtgtcagacacgtgtcgtgtccgacatcgaatgacaccgacacatctaattaaactgtatta 6415031  T
Q  175 tgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    ||||||||  | ||| | ||||   |||| ||||||||||||||||||    
T  6415032 tgtgattttctcaaataattagcgatgtcggcgtgtcagtgtccgtgt 6415079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 18337448 - 18337350
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||  |||||| |||||| | || |||||| ||||| ||||||||| |||||||     |||||||||| | ||||||||| ||||||||||    
T  18337448 ctatgaagcacggacactcctcggatcaggcatgtcccagtgtcggacacgtgttgtgtccg-----acaccgacacttgtaattacactgaattatgtg 18337354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 1864880 - 1864918
Alignment:
Q  144 caacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  1864880 caacaccgacacatataattacactgaattatgtgattt 1864918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 9690213 - 9690267
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtc 133  Q
    |||||||||||||||||||| ||||| | ||||||||| ||||| ||||||||||    
T  9690213 ctatgaagcacaaacactctccggattaggcgtgtcccggtgtcggacacgtgtc 9690267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 13997942 - 13997904
Alignment:
Q  144 caacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  13997942 caacaccgacacatataattacactgaattatgtgattt 13997904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 45534131 - 45534228
Alignment:
Q  80 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtga 179  Q
    |||||||||||||||||| |||||||| |||||||||  |||||||||     | ||| | |||| ||||||||| ||||| ||||||  ||||||||||    
T  45534131 tatgaagcacaaacactcctcggataaggcgtgtccctatgtcagaca-----catgtaccacaccacaccgacatatatacttacactaaattatgtga 45534225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 20157323 - 20157388
Alignment:
Q  118 gtgtcagacacgtgtcg-tgtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||| |||||| |||| |||| ||||| |||||||||||||| ||||||| ||||||||||||||    
T  20157323 gtgtcggacacgcgtcggtgtcggacacgacaccgacacatatgattacactgaattatgtgattt 20157388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 24577182 - 24577259
Alignment:
Q  140 gacacaacaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtc 217  Q
    ||||| |||||||||| | ||||||||| |||||||||||||| || |||   |||||| |||||||||||| |||||    
T  24577182 gacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgtcagcgtgtccgtgtc 24577259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 29163351 - 29163419
Alignment:
Q  109 cgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||||| ||||||| |||||||||||||||     ||||||||||||||||||| |  ||||||||||||||    
T  29163351 cgtgtcccggtgtcaggcacgtgtcgtgtccg-----acaccgacacatataattaaattgaattatgtgattt 29163419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 32461393 - 32461458
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 144  Q
    |||||||||||  |||||  | |||| | ||||||||| |||||||||||||||||||||||||||    
T  32461393 ctatgaagcacggacacttcttggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacac 32461458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 34371775 - 34371734
Alignment:
Q  141 acacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  34371775 acacgacaccgacacatataattacactgaattatgtgattt 34371734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 35919265 - 35919314
Alignment:
Q  133 cgtgtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||||||||| |||| ||||| ||||||||||| ||||||||||||||    
T  35919265 cgtgtccgacacgacacggacacttataattacactgaattatgtgattt 35919314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 182
Target Start/End: Complemental strand, 40181976 - 40181892
Alignment:
Q  93 cactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||| |||||| | ||||||||| ||||  ||||||||| |||||||||||     ||| |||||||||||||| ||||||||||||||    
T  40181976 cactcctcggattaggcgtgtcccggtgtaggacacgtgttgtgtccgacac-----cgatacatataattacactgaattatgtgattt 40181892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 9709877 - 9709841
Alignment:
Q  146 acaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||||||||||||||||||| |||||||||||||||    
T  9709877 acaccgacacatataattacaacgaattatgtgattt 9709841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 19562556 - 19562659
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacaca-acaccgacacatataattacaccgaattatgt 177  Q
    ||||||||||| | ||||| |||||| | | ||||||| ||||| ||||||||| || ||||||||  ||||| |||||||||||||||| ||| ||||     
T  19562556 ctatgaagcacga-cactcctcggattaggtgtgtccctgtgtcggacacgtgttgtatccgacactgacacctacacatataattacactgaactatga 19562654  T
Q  178 gattt 182  Q
    |||||    
T  19562655 gattt 19562659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 221
Target Start/End: Original strand, 22515825 - 22515964
Alignment:
Q  77 aactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatg 176  Q
    |||||||||||||  |||||| |||||| | ||||||| | ||||| || | ||||||||||||     |||||||||| | |||||||||  |||||||    
T  22515825 aactatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatatgtgtcgtgtccg-----acaccgacacttgtaattacactaaattatg 22515919  T
Q  177 tgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtg 221  Q
    |||||| || |||   |||| | |||| ||||||| |||||||||    
T  22515920 tgattttttcaaattattagctgtgtctgcgtgtccgtgtccgtg 22515964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 25361951 - 25361907
Alignment:
Q  138 ccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||||| |||| ||||||||||||||||| ||||||||||||||    
T  25361951 ccgacacgacactgacacatataattacactgaattatgtgattt 25361907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 5898206 - 5898304
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||| ||||||  |||||| |||||| |  |||||||| ||||  ||||||||||||||| |     |||||||| ||||||||||||| ||||||||||    
T  5898206 ctataaagcacggacactcctcggattagacgtgtcccggtgttggacacgtgtcgtgtctg-----acaccgacgcatataattacactgaattatgtg 5898300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 142
Target Start/End: Complemental strand, 6427594 - 6427531
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgac 142  Q
    |||||||||||  |||||| || ||| | ||||||||| ||||| |||||||||||||||||||    
T  6427594 ctatgaagcacggacactcatcagattaggcgtgtcccggtgtcggacacgtgtcgtgtccgac 6427531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 43492434 - 43492532
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||| |  |||||||||| | |||||| || ||||| |||| |||| ||||| |     ||||||||||| ||||||||||||||||| |||    
T  43492434 ctatgaagcacatatgctcttcggattaggcgtgtgccggtgtcggacatgtgttgtgtctg-----acaccgacacacataattacaccgaattacgtg 43492528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 51410144 - 51410046
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    ||||||||||| || |||| | |||| | ||||||| | ||||| || ||||||||||||||     |||||||||| | ||||||||| ||||||||||    
T  51410144 ctatgaagcacgaatactccttggattaggcgtgtctcggtgtcggatacgtgtcgtgtccg-----acaccgacacttgtaattacactgaattatgtg 51410050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 7918207 - 7918249
Alignment:
Q  140 gacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||| |||| ||||||||||||||||| ||||||||||||||    
T  7918207 gacacgacactgacacatataattacactgaattatgtgattt 7918249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 10233312 - 10233274
Alignment:
Q  144 caacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  10233312 caacacagacacatataattacactgaattatgtgattt 10233274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 13436515 - 13436478
Alignment:
Q  146 acaccgacacatataattacaccgaattatgtgatttc 183  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  13436515 acaccaacacatataattacactgaattatgtgatttc 13436478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 15765877 - 15765828
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacac 128  Q
    |||||||||||  ||||||||||||| | ||||||||| |||||||||||    
T  15765877 ctatgaagcacggacactcttcggattaggcgtgtcccagtgtcagacac 15765828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 34712372 - 34712421
Alignment:
Q  133 cgtgtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||||||||| |||| |||||||||||||||||  |||||||| ||||    
T  34712372 cgtgtccgacacgacactgacacatataattacactaaattatgttattt 34712421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 40917879 - 40917814
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 144  Q
    |||||||||||  ||| || |||||| | ||||||||| ||||| |||||||||||||||| ||||    
T  40917879 ctatgaagcacggacagtcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacac 40917814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 5e-31; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 76 - 217
Target Start/End: Complemental strand, 35223060 - 35222924
Alignment:
Q  76 aaactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattat 175  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||| ||||||     |||||||||||||||||||||  |||||||    
T  35223060 aaactatgaagcacggacactcctcggataaagcgtgtccccgtgtcagacacgtgtcatgtccg-----acaccgacacatataattacattgaattat 35222966  T
Q  176 gtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtc 217  Q
    |||||||  ||||||  |||||| |||| ||||||| |||||    
T  35222965 gtgattttctaaaaatgttagttgtgtcggcgtgtctgtgtc 35222924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 25065050 - 25064972
Alignment:
Q  66 atcaaaatgaaaactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 144  Q
    ||||| || ||||||||| ||||| ||||||| ||||||||| |||||||| |||||||||||||||||||||||||||    
T  25065050 atcaatataaaaactatggagcacgaacactcctcggataaaccgtgtcccggtgtcagacacgtgtcgtgtccgacac 25064972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 79 - 240
Target Start/End: Complemental strand, 20503584 - 20503429
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||  |||||| |||||| | ||||||||| |||||||||| ||||||||||     |||||||||||| | ||||||||| |||||||||     
T  20503584 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcagacatgtgtcgtgtc-----caacaccgacacttgtaattacactgaattatgtc 20503490  T
Q  179 atttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcata 240  Q
    |||| || |||   || ||| |||| |||||||||||| ||||| | |||||||||||||||    
T  20503489 attttttcaaattatttgttgtgtcggcgtgtcagtgt-cgtgtccgtatccgtgcttcata 20503429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 13845465 - 13845576
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||  |||||| | |||||| ||||||| ||||||||||||||| |||||||||     |||||||||||||||||||||| | ||| ||||    
T  13845465 ctatgaagcacggacactccttggataaggcgtgtctccgtgtcagacacgtctcgtgtccg-----acaccgacacatataattacactgcattttgtg 13845559  T
Q  179 atttcttaaaaaattta 195  Q
    ||||  |||||||||||    
T  13845560 attttctaaaaaattta 13845576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 27505370 - 27505267
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||  |||||| |||||| | || |||||| ||||| ||||||||||||||| ||||| |||||||||| | |||||||||  |||||||||    
T  27505370 ctatgaagcacggacactcctcggattaggcatgtcccggtgtcggacacgtgtcgtgtcagacacgacaccgacacttgtaattacacttaattatgtg 27505271  T
Q  179 attt 182  Q
    ||||    
T  27505270 attt 27505267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 10690193 - 10690300
Alignment:
Q  80 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac-----aacaccgacacatataattacaccgaatta 174  Q
    ||||||||||| ||| || |||||| | | ||||| ||||||||||||||||| |||||||||||     || ||||||| |||||||||||| ||||||    
T  10690193 tatgaagcacatacattcctcggattaggtgtgtcgccgtgtcagacacgtgttgtgtccgacactaaacaataccgacaaatataattacactgaatta 10690292  T
Q  175 tgtgattt 182  Q
    ||||||||    
T  10690293 tgtgattt 10690300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 40993275 - 40993373
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    ||||||||||   |||||| |||||| | ||||||||| ||||| |||| ||||||||||||||||     |||||||||||||||||| ||||||||||    
T  40993275 ctatgaagcatggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacac-----cgacacatataattacactgaattatgtg 40993369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 55401194 - 55401056
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||  |||||| |||||| | ||||||| | ||||| |||||||||||||||||     |||||||||| | |||||||||  |||||||||    
T  55401194 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtcgtgtccg-----acaccgacacttgtaattacactaaattatgtg 55401100  T
Q  179 atttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    |||| || |||   |||||| |||| |||| |||||||||||||    
T  55401099 attttttcaaattattagttgtgtcggcgtatcagtgtccgtgt 55401056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 175
Target Start/End: Original strand, 8039763 - 8039866
Alignment:
Q  78 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgt------ccgacacaacaccgacacatataattacaccgaa 171  Q
    ||||||||||||| | ||||||||||| ||||||||||| ||||| |||| || || |||      ||||||| |||||||||||||||||||||| |||    
T  8039763 actatgaagcacagatactcttcggattaagcgtgtcccggtgtcggacatgtctcatgtccgacaccgacacgacaccgacacatataattacactgaa 8039862  T
Q  172 ttat 175  Q
    ||||    
T  8039863 ttat 8039866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 222
Target Start/End: Complemental strand, 10955056 - 10954933
Alignment:
Q  94 actcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgatttcttaaaaaatt 193  Q
    |||| |||||| | ||||||||| ||||| |||||||||||||||||||||     |||||| | | ||||||| |||||||||||||| || |||   |    
T  10955056 actcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgacac-----cgacacttgtgattacactgaattatgtgattttttcaaattat 10954962  T
Q  194 tagttttgtcagcgtgtcagtgtccgtgt 222  Q
    ||||| |||| |||||||||||| |||||    
T  10954961 tagttgtgtcggcgtgtcagtgttcgtgt 10954933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 28918093 - 28917982
Alignment:
Q  108 gcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcg 207  Q
    ||||||||| ||||| ||||||||||||||||   || |||||||||| | ||||||||| |||||||||||||| || |||   |||| | |||| |||    
T  28918093 gcgtgtcccagtgtcggacacgtgtcgtgtcc---acgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctatgtcggcg 28917997  T
Q  208 tgtcagtgtccgtgt 222  Q
    ||||||| |||||||    
T  28917996 tgtcagtttccgtgt 28917982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 29508539 - 29508465
Alignment:
Q  109 cgtgtccccgtgtcagacacgtgtcgtgtccgacac-aacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||||| ||||| |||  |||||||||||||||| |||| |||||||||||||||||| ||||||| ||||||    
T  29508539 cgtgtcccggtgtcggacgtgtgtcgtgtccgacaccaacatcgacacatataattacactgaattatatgattt 29508465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 41961579 - 41961728
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgt------ccgacacaacaccgacacatataattacaccgaat 172  Q
    |||||||||||  |||||  |||||| | ||||||||| ||||| ||||||||||||||      ||||||| |||||||||| | ||||||||||||||    
T  41961579 ctatgaagcacggacacttctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattacaccgaat 41961678  T
Q  173 tatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
     ||||||| | || |||   |||||| || | ||||||||||||| ||||    
T  41961679 aatgtgatattttcaaattattagttgtgacggcgtgtcagtgtctgtgt 41961728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 17005546 - 17005657
Alignment:
Q  77 aactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac------aacaccgacacatataattacaccga 170  Q
    ||||||||||||||||||||| |||||| |   ||||||  |||||||||||||||  |||| |||||      ||||||||||| ||||||||||| ||    
T  17005546 aactatgaagcacaaacactcctcggattagaggtgtcctggtgtcagacacgtgttatgtctgacaccaacacaacaccgacacttataattacactga 17005645  T
Q  171 attatgtgattt 182  Q
    ||||| ||||||    
T  17005646 attatatgattt 17005657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 2941672 - 2941579
Alignment:
Q  84 aagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||||||||| |  | |||||| || | ||||| ||||||||||||||||||||||     |||||||||||||||||||||| | ||| ||||||||    
T  2941672 aagcacaaacatttcttggataaggcatatccccatgtcagacacgtgtcgtgtccg-----acaccgacacatataattacactgtattttgtgattt 2941579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 220
Target Start/End: Complemental strand, 18427037 - 18426932
Alignment:
Q  110 gtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtg 209  Q
    ||||||| ||| | |||||||||||| ||||     ||||||||| ||||||||||||||||||||||||||| || |||   |||||  |||| |||||    
T  18427037 gtgtcccggtgccggacacgtgtcgtatccg-----acaccgacatatataattacaccgaattatgtgattttttgaaattattagtggtgtcggcgtg 18426943  T
Q  210 tcagtgtccgt 220  Q
    || ||||||||    
T  18426942 tccgtgtccgt 18426932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 8789489 - 8789588
Alignment:
Q  80 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgt--cgtgtccgacacaacaccgacacatataattacaccgaattatgt 177  Q
    ||||||||||  |||||| |||||| | ||||||| | ||||| |||| ||||  ||||||||||||     |||||||||||||||||| |||||||||    
T  8789489 tatgaagcacggacactcctcggattaggcgtgtctcggtgtccgacatgtgtgtcgtgtccgacac-----cgacacatataattacacggaattatgt 8789583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 25948876 - 25948925
Alignment:
Q  133 cgtgtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||||||||| ||||| |||| ||||||||||| ||||||||||||||    
T  25948876 cgtgtccgacacgacaccaacacttataattacactgaattatgtgattt 25948925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 7928507 - 7928471
Alignment:
Q  146 acaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||||||||||||||||||| ||||||||||||||    
T  7928507 acaccgacacatataattacactgaattatgtgattt 7928471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 14209178 - 14209079
Alignment:
Q  138 ccgacacaacaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttc 237  Q
    ||||||| |||| ||||| | ||||||||| |||||||||||||| ||||||   |||||| |||| ||||||| ||||| |||| |  |||||||||||    
T  14209178 ccgacacgacactgacacttgtaattacactgaattatgtgattttttaaaattattagttgtgtcggcgtgtc-gtgtctgtgtccgcatccgtgcttc 14209080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 34185050 - 34185161
Alignment:
Q  77 aactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtcc------gacacaacaccgacacatataattacaccga 170  Q
    |||||||||||||  |||||| |||||| | ||||||||| ||||| ||||| |||| |||||      ||||| |||||||||| | ||||||||| ||    
T  34185050 aactatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacatgtcttgtccgacatggacacgacaccgacacttgtaattacactga 34185149  T
Q  171 attatgtgattt 182  Q
    ||| ||||||||    
T  34185150 attgtgtgattt 34185161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 7171620 - 7171522
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||| | |||||| | |||| | ||||||| | ||||| ||||||||||||||||||||| |     |||| | ||||||||||||||||| ||    
T  7171620 ctatgaagcatatacactccttggattaggcgtgtcgcggtgtcggacacgtgtcgtgtccgacacca-----acacttgtaattacaccgaattatatg 7171526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 189
Target Start/End: Original strand, 8930836 - 8930875
Alignment:
Q  150 cgacacatataattacaccgaattatgtgatttcttaaaa 189  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  8930836 cgacacatataattacatcgaattatgtgattttttaaaa 8930875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 15864950 - 15864880
Alignment:
Q  80 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtc-gtgtccgacacaacacc 150  Q
    ||||||||||  |||||||| |||| | ||||||||| |||||||||||||||| ||||||||||| |||||    
T  15864950 tatgaagcacggacactctttggattaggcgtgtccc-gtgtcagacacgtgtcggtgtccgacacgacacc 15864880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 189
Target Start/End: Complemental strand, 38731275 - 38731232
Alignment:
Q  146 acaccgacacatataattacaccgaattatgtgatttcttaaaa 189  Q
    |||||||||||||||| ||||| |||||||||||||| ||||||    
T  38731275 acaccgacacatataactacactgaattatgtgattttttaaaa 38731232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 15796223 - 15796288
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 144  Q
    ||||||||||| ||||||||| |||| | |||||| || ||||  ||||||||| |||||||||||    
T  15796223 ctatgaagcacgaacactctttggattaggcgtgttccggtgttggacacgtgttgtgtccgacac 15796288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 241
Target Start/End: Complemental strand, 28812577 - 28812477
Alignment:
Q  141 acacaacaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccg-tgttcatatccgtgcttcat 239  Q
    |||| |||||||||| | ||| ||||| ||||||||||||||||| |||   |||||| |||| ||||||| ||||||| |||   ||||||||||||||    
T  28812577 acacgacaccgacacttgtaactacactgaattatgtgatttcttcaaattattagttgtgtcggcgtgtc-gtgtccgttgtctgtatccgtgcttcat 28812479  T
Q  240 ag 241  Q
    ||    
T  28812478 ag 28812477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 3e-29; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 78 - 240
Target Start/End: Complemental strand, 28152218 - 28152062
Alignment:
Q  78 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgt 177  Q
    |||||||||||| ||||||| |||||| | || |||||| ||||| |||||||||||||||||     |||||||||| | ||||||||| |||||||||    
T  28152218 actatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtcgtgtccg-----acaccgacacttgtaattacactgaattatgt 28152124  T
Q  178 gatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcata 240  Q
    ||||| || |||   |||| |||||| |||||||||||||||||| |||||||||||||||||    
T  28152123 gattt-ttcaaattattagctttgtcggcgtgtcagtgtccgtgtccatatccgtgcttcata 28152062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 81 - 222
Target Start/End: Complemental strand, 12696446 - 12696305
Alignment:
Q  81 atgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgat 180  Q
    |||||||||| |||||| | |||||| | ||||||| ||||||||||||||||||||||||||| |||| ||||| | ||||||||| ||||||||| ||    
T  12696446 atgaagcacagacactccttggataaggtgtgtcccggtgtcagacacgtgtcgtgtccgacacgacactgacacttgtaattacactgaattatgtaat 12696347  T
Q  181 ttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    || || |||   |||| | |||| ||||||||||||||||||    
T  12696346 tttttcaaattattagctgtgtcggcgtgtcagtgtccgtgt 12696305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 17327590 - 17327693
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||  |||||| |||||| | ||||||||| ||||||||||||||||||||||||||| |||| |||||||||| ||||||  |||||||||    
T  17327590 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcagacacgtgtcgtgtccgacacgacactgacacatatagttacactaaattatgtg 17327689  T
Q  179 attt 182  Q
    ||||    
T  17327690 attt 17327693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 16488518 - 16488657
Alignment:
Q  78 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgt------ccgacacaacaccgacacatataattacaccgaa 171  Q
    |||||||||||| |||| || | |||||| ||||||||||||| ||||||||||||||||      ||||||| |||||||||||||||||||||| | |    
T  16488518 actatgaagcacgaacattccttggataaggcgtgtccccgtgccagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgca 16488617  T
Q  172 ttatgtgatttcttaaaaaatttagttttgtcagcgtgtc 211  Q
    || ||||||||  ||||||| |||| | |||| |||||||    
T  16488618 ttttgtgattttctaaaaaaattagctgtgtcggcgtgtc 16488657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 79 - 211
Target Start/End: Complemental strand, 18367966 - 18367828
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgt------ccgacacaacaccgacacatataattacaccgaat 172  Q
    |||||||||||  |||||| | |||||| |||||||||||||||||||| |||||||||      ||||||| |||||||||||||||||||||| | ||    
T  18367966 ctatgaagcacggacactccttggataaggcgtgtccccgtgtcagacatgtgtcgtgtctgacaccgacacgacaccgacacatataattacactgcat 18367867  T
Q  173 tatgtgatttcttaaaaaatttagttttgtcagcgtgtc 211  Q
    | ||||||||  ||||||| |||| | |||| |||||||    
T  18367866 tttgtgattttctaaaaaaattagctgtgtcggcgtgtc 18367828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 34595253 - 34595115
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||  |||||| |||||| | | ||||||| |||||||||||||||||||||||     |||||||||| | ||||||||| ||||||||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtcgtgtccg-----acaccgacacttgtaattacactgaattatgtg 34595159  T
Q  179 atttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    |||| || |||   |||||| |||| |||||||| |||||||||    
T  34595158 attttttcaaattattagttgtgtcggcgtgtcattgtccgtgt 34595115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 8365448 - 8365597
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccga------cacaacaccgacacatataattacaccgaat 172  Q
    |||||||||||  | |||| |||||| | ||||||||| ||||| ||||||||||||||||||      ||| |||||||||| | ||||||||||||||    
T  8365448 ctatgaagcacggagactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacacgacaccgacacttgtaattacaccgaat 8365547  T
Q  173 tatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    |||||||| | || |||   |||||| |||| ||||||||||||||||||    
T  8365548 tatgtgatattttcaaattattagttgtgtcggcgtgtcagtgtccgtgt 8365597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 33001229 - 33001327
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    ||||||||||||||||||||| |||| | |||| |  | |||||||||||||||||||||||     |||||||||||||||||||||   |||||||||    
T  33001229 ctatgaagcacaaacactctttggattaggcgtatttcggtgtcagacacgtgtcgtgtccg-----acaccgacacatataattacatttaattatgtg 33001323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 218
Target Start/End: Complemental strand, 16766827 - 16766682
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccg------acacaacaccgacacatataattacaccgaat 172  Q
    |||||||||||  ||| ||||||||| | ||||||||| ||||| ||||||||| |||||||      |||| |||||||||| | ||||||||| ||||    
T  16766827 ctatgaagcacggacattcttcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaat 16766728  T
Q  173 tatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtcc 218  Q
    |||||||||| || |||   |||| | |||| ||||||||||||||    
T  16766727 tatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtcc 16766682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 24138537 - 24138447
Alignment:
Q  92 acactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||||||||||| | || |||| | |||||||||||||||| ||||| |||||||||||| |||||||| |||||  |||||| ||||||    
T  24138537 acactcttcggattaggcatgtctctgtgtcagacacgtgtcatgtccaacacaacaccgatacatataaatacacttaattatatgattt 24138447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 241
Target Start/End: Original strand, 17841530 - 17841686
Alignment:
Q  80 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtga 179  Q
    ||||||||||  |||||| |||||| | ||||||| | ||||| ||||| |||||||||||||||     || ||| | |||||||||  ||||||||||    
T  17841530 tatgaagcacggacactcctcggattaggcgtgtctcagtgtcggacacatgtcgtgtccgacac-----cgtcacttgtaattacactaaattatgtga 17841624  T
Q  180 tttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcatag 241  Q
    ||| || |||   |||| | |||| |||||||||||||||||| | |||| |||||||||||    
T  17841625 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatcagtgcttcatag 17841686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 3398712 - 3398600
Alignment:
Q  109 cgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgt 208  Q
    ||||| || ||||| |||| ||||||||||| |||| ||||||| || ||||||||||| ||||||| |||||| || |||   |||| | |||| ||||    
T  3398712 cgtgttccggtgtcggacatgtgtcgtgtccaacacgacaccgatacttataattacactgaattatatgattt-ttcaaattattagctgtgtcggcgt 3398614  T
Q  209 gtcagtgtccgtgt 222  Q
    ||||||||||||||    
T  3398613 gtcagtgtccgtgt 3398600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 10770659 - 10770748
Alignment:
Q  129 gtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtcc 218  Q
    |||||||||| ||||| |||||||||| | ||||||||| |||||||||||||| || |||   |||||| |||  ||||||||||||||    
T  10770659 gtgtcgtgtctgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagttgtgttggcgtgtcagtgtcc 10770748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 217
Target Start/End: Original strand, 5626641 - 5626769
Alignment:
Q  80 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtga 179  Q
    |||||||||||||||||| |||||||| || ||| ||| |  |||    ||||||||||||||||     ||||||||||| |||||| ||| || ||||    
T  5626641 tatgaagcacaaacactcctcggataaggcatgttcccattacag----gtgtcgtgtccgacac-----cgacacatatatttacactgaactaagtga 5626731  T
Q  180 tttcttaaaaaatttagttttgtcagcgtgtcagtgtc 217  Q
    |||  ||||||| |||||| |||| |||||||||||||    
T  5626732 ttttctaaaaaaattagttgtgtcggcgtgtcagtgtc 5626769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 9025484 - 9025532
Alignment:
Q  134 gtgtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||||||||    
T  9025484 gtgtcggacacgacaccgacacatataattacactgaattatgtgattt 9025532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 181
Target Start/End: Complemental strand, 9027247 - 9027200
Alignment:
Q  134 gtgtccgacacaacaccgacacatataattacaccgaattatgtgatt 181  Q
    ||||| ||||| |||||||||||||||||||||| |||||||||||||    
T  9027247 gtgtcggacacgacaccgacacatataattacacggaattatgtgatt 9027200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 9658969 - 9658860
Alignment:
Q  108 gcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtga-tttcttaaaaaatttagttttgtcagc 206  Q
    |||||| || |||||||||||||||||||||      |||||||||| |||||||||||| ||||||||||| |||||||||  | ||||   |||| ||    
T  9658969 gcgtgttccggtgtcagacacgtgtcgtgtct-----aacaccgacaaatataattacactgaattatgtgattttcttaaatta-ttagcggtgtcggc 9658876  T
Q  207 gtgtcagtgtccgtgt 222  Q
    ||||||||||||||||    
T  9658875 gtgtcagtgtccgtgt 9658860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 3209518 - 3209453
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 144  Q
    ||||||||||||||||||| |||||| | ||||||||  ||||| ||| |||||||||| ||||||    
T  3209518 ctatgaagcacaaacactcctcggattaggcgtgtccgggtgtcggacgcgtgtcgtgttcgacac 3209453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 7086865 - 7086816
Alignment:
Q  133 cgtgtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||| ||||| ||||||||||||||||||||||  |||||||||||||    
T  7086865 cgtgtctgacactacaccgacacatataattacactaaattatgtgattt 7086816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 7027299 - 7027263
Alignment:
Q  146 acaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||||||||||||||||||| ||||||||||||||    
T  7027299 acaccgacacatataattacactgaattatgtgattt 7027263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 7265595 - 7265631
Alignment:
Q  146 acaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||||||||||||||||||| ||||||||||||||    
T  7265595 acaccgacacatataattacactgaattatgtgattt 7265631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 9522956 - 9522912
Alignment:
Q  138 ccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||||||||||||||| | ||||||||| ||||||||||||||    
T  9522956 ccgacacaacaccgacacttgtaattacactgaattatgtgattt 9522912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 13789273 - 13789209
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgaca 143  Q
    ||||||||||| ||||||| | | |||| |||| ||||| ||||||||||||||| |||||||||    
T  13789273 ctatgaagcacgaacactccttgaataaggcgtatccccatgtcagacacgtgtcatgtccgaca 13789209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 13797892 - 13797828
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgaca 143  Q
    ||||||||||| ||||||| | | |||| |||| ||||| ||||||||||||||| |||||||||    
T  13797892 ctatgaagcacgaacactccttgaataaggcgtatccccatgtcagacacgtgtcatgtccgaca 13797828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 26562754 - 26562710
Alignment:
Q  138 ccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||||| ||| |||||||||||||||||| ||||||||||||||    
T  26562754 ccgacacgacatcgacacatataattacactgaattatgtgattt 26562710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 13364645 - 13364743
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||| |||||| |||||  |  |||||||  |||||||||| || ||||||||     ||||||||||||||| ||||||| ||||||| ||    
T  13364645 ctatgaagcacagacactcgtcggaatagacgtgtcctggtgtcagacatgtatcgtgtcc-----aacaccgacacatatgattacactgaattatatg 13364739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 24645602 - 24645535
Alignment:
Q  77 aactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 144  Q
    |||||||||||||| ||||||||||||| |  ||||||   ||||| ||||||||||||||| |||||    
T  24645602 aactatgaagcacagacactcttcggattagacgtgtcttggtgtcggacacgtgtcgtgtctgacac 24645535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 17302601 - 17302515
Alignment:
Q  159 taattacaccgaattatgtgatttcttaaaaaat-ttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcatagaat 244  Q
    ||||||||  |||||||||||||| ||  ||| | |||||| ||||||||||||||||| ||||| | |||| | ||||||||||||    
T  17302601 taattacattgaattatgtgatttttttcaaattattagttgtgtcagcgtgtcagtgttcgtgtccgtatctgcgcttcatagaat 17302515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 4388199 - 4388150
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacac 128  Q
    |||||||||||| |||||  |||||||| |||||||| ||||||||||||    
T  4388199 ctatgaagcacagacacttctcggataaggcgtgtcctcgtgtcagacac 4388150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 9911524 - 9911569
Alignment:
Q  140 gacacaacaccgacacatataattacaccgaattatgtgatttctt 185  Q
    ||||| |||||||||| | ||||||||| |||||||||||||||||    
T  9911524 gacacgacaccgacacttgtaattacactgaattatgtgatttctt 9911569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 10339054 - 10339119
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 144  Q
    |||||||||||  |||||| || ||| | ||||||||| ||||| |||| ||||||||||||||||    
T  10339054 ctatgaagcacggacactcctccgattaggcgtgtcccagtgtcggacatgtgtcgtgtccgacac 10339119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 16833366 - 16833289
Alignment:
Q  145 aacaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    ||||||||||| | ||||||||| ||| |||||||||| || |||   |||||| |||| ||||||||||||| ||||    
T  16833366 aacaccgacacttgtaattacactgaagtatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtctgtgt 16833289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 19040421 - 19040373
Alignment:
Q  129 gtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||||||||||||||     ||||||||||||||||| ||||||||||||||    
T  19040421 gtgtcgtgtccgacaca-----gacacatataattacactgaattatgtgattt 19040373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 3e-29; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 77 - 211
Target Start/End: Original strand, 30098976 - 30099105
Alignment:
Q  77 aactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatg 176  Q
    ||||| ||||||| ||||||| | |||||| |||||||||||||||||||||||||||| ||||     |||||||||||||||||||||| ||||||||    
T  30098976 aactacgaagcacgaacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtatccg-----acaccgacacatataattacacagaattatg 30099070  T
Q  177 tgatttcttaaaaaatttagttttgtcagcgtgtc 211  Q
     ||||  ||||||||||||||| |||| |||||||    
T  30099071 cgattgtttaaaaaatttagttgtgtcggcgtgtc 30099105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 80 - 222
Target Start/End: Complemental strand, 6401627 - 6401479
Alignment:
Q  80 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacaca------acaccgacacatataattacaccgaatt 173  Q
    ||||||||||  |||||| | |||||| |||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||| | |||    
T  6401627 tatgaagcacggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacactgacacgacaccgacacatataattacactgtatt 6401528  T
Q  174 atgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
     ||||||||  |||||||||||||| |||| ||||||| ||||||||||    
T  6401527 ttgtgattttctaaaaaatttagttgtgtcggcgtgtcggtgtccgtgt 6401479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 21814392 - 21814253
Alignment:
Q  78 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccg------acacaacaccgacacatataattacaccgaa 171  Q
    |||||||||||| |||| || | |||||| ||||||||||||| |||||||||||||||||||      |||| |||||||||||||||||||||| | |    
T  21814392 actatgaagcacgaacattccttggataaggcgtgtccccgtgccagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgca 21814293  T
Q  172 ttatgtgatttcttaaaaaatttagttttgtcagcgtgtc 211  Q
    || ||||||||  ||||||| |||| | |||| |||||||    
T  21814292 ttttgtgattttctaaaaaaattagctgtgtcggcgtgtc 21814253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 81 - 242
Target Start/End: Complemental strand, 43001922 - 43001761
Alignment:
Q  81 atgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgat 180  Q
    |||||||||  |||||| |||||| | ||||||||  ||||  |||||||||||||||||||||| |||| |||| | ||||||||| ||||||||| ||    
T  43001922 atgaagcacggacactcctcggattaggcgtgtccaggtgtttgacacgtgtcgtgtccgacacatcaccaacacttgtaattacactgaattatgtaat 43001823  T
Q  181 ttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcataga 242  Q
    || || |||   ||||   ||||  | ||||||||||||||| | |||||||||||||||||    
T  43001822 tttttcaaattattagcagtgtcgacatgtcagtgtccgtgtccgtatccgtgcttcataga 43001761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 92 - 182
Target Start/End: Original strand, 23015937 - 23016027
Alignment:
Q  92 acactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||| |||||| | |||||||||  |||| ||||| |||||||||||| |||||| |||||| ||||||||||| ||||||||||||||    
T  23015937 acactcctcggattaggcgtgtcccaatgtcggacacatgtcgtgtccgatacaacatcgacacctataattacactgaattatgtgattt 23016027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 79 - 217
Target Start/End: Complemental strand, 31084447 - 31084309
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    ||||||| |||  |||||| |||||| | || |||||| ||||| ||||||||||||||||||||| ||| |||||| | ||||||||  ||||||||||    
T  31084447 ctatgaaccacggacactcctcggattaggcatgtcccagtgtcggacacgtgtcgtgtccgacacgacatcgacacttgtaattacattgaattatgtg 31084348  T
Q  179 atttcttaaaaaatttagttttgtcagcgtgtcagtgtc 217  Q
    |||| || |||   |||| | |||| |||||||||||||    
T  31084347 attttttcaaattattagctgtgtcggcgtgtcagtgtc 31084309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 14873641 - 14873542
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||  |||||| |||||| | ||||||||| ||||  ||||||||| | ||||||||  ||||||||||||||||||||||  |||||||||    
T  14873641 ctatgaagcacggacactcctcggattaggcgtgtcccggtgttggacacgtgttgcgtccgacatgacaccgacacatataattacactaaattatgtg 14873542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 21576685 - 21576783
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||  |||||| |||||| | ||||||||| ||||||||||||||||||||||||||      |||||| | ||||||||| ||||||||||    
T  21576685 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacat-----cgacacttgtaattacactgaattatgtg 21576779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 28588614 - 28588712
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    ||||||||||   ||||||||||||| ||||||||||  |||||||| | ||||||||||||     |||||||||| ||||||||||| ||||||||||    
T  28588614 ctatgaagcatggacactcttcggattaagcgtgtcctggtgtcagatatgtgtcgtgtccg-----acaccgacacctataattacactgaattatgtg 28588708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 39206004 - 39205901
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||| | |||||| | |||| || ||| |||| ||||| | ||||||||||||| ||||| ||||| ||||||||||||||||| |||||| ||    
T  39206004 ctatgaagcatagacactccttggattaaacgtatcccggtgtcgggcacgtgtcgtgtcggacacgacaccaacacatataattacacctaattatatg 39205905  T
Q  179 attt 182  Q
    ||||    
T  39205904 attt 39205901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 21522880 - 21522731
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacaca------acaccgacacatataattacaccgaat 172  Q
    |||||| ||||  |||||||| |||| | ||||||||| ||| | |||||||||||||||||||||       |||||||||  | ||||||||| ||||    
T  21522880 ctatgatgcacggacactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaat 21522781  T
Q  173 tatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    ||||| |||| ||||||   |||| | |||| ||||||||||||||||||    
T  21522780 tatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccgtgt 21522731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 21533446 - 21533297
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacaca------acaccgacacatataattacaccgaat 172  Q
    |||||| ||||  |||||||| |||| | ||||||||| ||| | |||||||||||||||||||||       |||||||||  | ||||||||| ||||    
T  21533446 ctatgatgcacggacactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaat 21533347  T
Q  173 tatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    ||||| |||| ||||||   |||| | |||| ||||||||||||||||||    
T  21533346 tatgttattttttaaaattattagctgtgtcggcgtgtcagtgtccgtgt 21533297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 222
Target Start/End: Original strand, 21190998 - 21191134
Alignment:
Q  81 atgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgat 180  Q
    |||||||||  |||||| |||||| | ||||||||| | ||| ||||||||| |||||||||||     |||||| | ||||||||| ||||||||||||    
T  21190998 atgaagcacggacactcctcggattaggcgtgtcccggagtcggacacgtgttgtgtccgacac-----cgacacttgtaattacactgaattatgtgat 21191092  T
Q  181 ttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    || || |||   |||| | |||| || |||||||||||||||    
T  21191093 tttttcaaattattagctgtgtcggcatgtcagtgtccgtgt 21191134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 27932354 - 27932289
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 144  Q
    ||||||||||||||||||| ||| || | ||||||||  ||||| |||||||||||||||||||||    
T  27932354 ctatgaagcacaaacactcctcgaattaggcgtgtcctggtgtccgacacgtgtcgtgtccgacac 27932289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 220
Target Start/End: Complemental strand, 39698672 - 39698524
Alignment:
Q  78 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacaca------acaccgacacatataattacaccgaa 171  Q
    ||||||||||||  |||||| |||||| | ||||||| | ||||| || || |||||||||||||||       |||| ||||| | ||||||||| |||    
T  39698672 actatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatacatgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaa 39698573  T
Q  172 ttatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgt 220  Q
    ||||||||||| || |||   |||| | |||||||||||||||||||||    
T  39698572 ttatgtgattttttcaaattattagctgtgtcagcgtgtcagtgtccgt 39698524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 39758332 - 39758279
Alignment:
Q  143 acaacaccgacacatataattacaccgaattatgtgatttcttaaaaaatttag 196  Q
    |||| |||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  39758332 acaataccgacacatataattacactgaattatgtgattttctaaaaaatttag 39758279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 42029871 - 42029773
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||| ||||  |||||| |||||||| |||||||  |||| |||||| ||||||||||||     ||||||| |||||||||||||  ||||||||||    
T  42029871 ctatgatgcacggacactcctcggataaggcgtgtctacgtgacagacatgtgtcgtgtccg-----acaccgatacatataattacattgaattatgtg 42029777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 38749551 - 38749601
Alignment:
Q  132 tcgtgtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||||||||||||||||| |||||||||||||||  ||||||||| ||||    
T  38749551 tcgtgtccgacacaacaccaacacatataattacattgaattatgtcattt 38749601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 30502330 - 30502426
Alignment:
Q  81 atgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgat 180  Q
    ||||||||| |||| || | |||| | || |||||| ||||| |||| ||||||||||||||||     |||||||||||||||||| |||||| |||||    
T  30502330 atgaagcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacac-----cgacacatataattacactgaattaagtgat 30502424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 30542673 - 30542769
Alignment:
Q  81 atgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgat 180  Q
    ||||||||| |||| || | |||| | || |||||| ||||| |||| ||||||||||||||||     |||||||||||||||||| |||||| |||||    
T  30542673 atgaagcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacac-----cgacacatataattacactgaattaagtgat 30542767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 2436991 - 2436943
Alignment:
Q  134 gtgtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||| ||||| ||||||||||||||||| ||| |||||||||||||||    
T  2436991 gtgtcggacacgacaccgacacatataatcacaacgaattatgtgattt 2436943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 14674323 - 14674231
Alignment:
Q  149 ccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcatag 241  Q
    ||||||| | |||||||||  ||||||||||||| || |||   |||| | |||| ||||||||||||||||||   ||||||||||||||||    
T  14674323 ccgacacttgtaattacactaaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtctgtatccgtgcttcatag 14674231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 6471880 - 6471927
Alignment:
Q  135 tgtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||| |||| ||||| |||||||||||||||| ||||||||||||||    
T  6471880 tgtcccacacgacacccacacatataattacactgaattatgtgattt 6471927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 15382591 - 15382500
Alignment:
Q  92 acactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgaca-caacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||| |||||| | ||||||||| ||||| |||| ||||||||||| ||| | |||||||||| | |||||| || ||||||| ||||||    
T  15382591 acactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccaacaccgacaccgacacttgtaattatactgaattatatgattt 15382500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 43565000 - 43564902
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||  |||||  |||||| | ||||||||| | ||| ||||| |||||||||||     |||||||||| |||||||||||  |||||||||    
T  43565000 ctatgaagcacggacacttctcggattaggcgtgtcccggcgtcggacacatgtcgtgtccg-----acaccgacacttataattacactaaattatgtg 43564906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 3966566 - 3966524
Alignment:
Q  140 gacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||| |||||||||||||||||||||| ||||| ||||||||    
T  3966566 gacacgacaccgacacatataattacactgaattgtgtgattt 3966524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 26312883 - 26312798
Alignment:
Q  84 aagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaatta 174  Q
    ||||||| |||||| |||||| | | ||||||  ||||||||||||| |||||||||     ||||||| |||||||||||||| ||||||    
T  26312883 aagcacatacactcctcggattaggtgtgtcctggtgtcagacacgtatcgtgtccg-----acaccgatacatataattacactgaatta 26312798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 32426871 - 32426921
Alignment:
Q  146 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttag 196  Q
    ||||||||||| |||||||||  ||||||||||||||  ||||||||||||    
T  32426871 acaccgacacaaataattacaatgaattatgtgattttctaaaaaatttag 32426921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 41091253 - 41091295
Alignment:
Q  140 gacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||| ||| |||||||||||||||||| ||||||||||||||    
T  41091253 gacacgacatcgacacatataattacactgaattatgtgattt 41091295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 5e-28; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 18212973 - 18213112
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||| |||||| |||||||| |||||||||||||||||| | | ||||||||||     ||||||||||||||||||||||  |||||||||    
T  18212973 ctatgaagcacagacactcctcggataaggcgtgtccccgtgtcagaaaggggtcgtgtccg-----acaccgacacatataattacactaaattatgtg 18213067  T
Q  179 a-tttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    | ||||| |||||| |||||| |||| |||| |||||||||||||    
T  18213068 attttctaaaaaaaattagttgtgtcggcgtatcagtgtccgtgt 18213112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 5409771 - 5409910
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||  |||||| |||||| | ||||||||| ||||| ||||||||||||||||||||| |||||||||| | ||||| ||| ||||||||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacacgacaccgacacttgtaattgcactgaattatgtg 5409870  T
Q  179 atttcttaaaaaatttagttttgtcagcgtgtcagtgtcc 218  Q
    |||| || |||   |||| | | |||||||||||||||||    
T  5409871 attttttcaaattattagctgtatcagcgtgtcagtgtcc 5409910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 32093952 - 32094058
Alignment:
Q  77 aactatgaagcacaaacactcttcggataaagcgtgtccccg-tgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattat 175  Q
    ||||||||||||| ||||||| |||||| | ||||||||||| |||| ||||||||||||||||||||| |||||||||  | ||||||||| |||||||    
T  32093952 aactatgaagcacgaacactcctcggattaggcgtgtccccggtgtcggacacgtgtcgtgtccgacacgacaccgacatttgtaattacactgaattat 32094051  T
Q  176 gtgattt 182  Q
    |||||||    
T  32094052 gtgattt 32094058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 82 - 196
Target Start/End: Complemental strand, 39138560 - 39138451
Alignment:
Q  82 tgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgatt 181  Q
    ||||||||| | |||||| |||||| |||||||||||||| ||||| || |||||||||||||     ||||| |||||||||||| |||||||||||||    
T  39138560 tgaagcacagatactcttgggataaggcgtgtccccgtgttagacatgtatcgtgtccgacac-----cgacatatataattacactgaattatgtgatt 39138466  T
Q  182 tcttaaaaaatttag 196  Q
    |  ||||||||||||    
T  39138465 ttctaaaaaatttag 39138451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 1433578 - 1433475
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||  |||||| |||||| |  |||||||  ||||| ||||| |||| |||||||||| ||||||||||||||||||||||| ||| |||||    
T  1433578 ctatgaagcacggacactcctcggattagacgtgtcctggtgtcggacacatgtcttgtccgacacgacaccgacacatataattacaccaaatgatgtg 1433479  T
Q  179 attt 182  Q
    ||||    
T  1433478 attt 1433475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 9778624 - 9778521
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||  |||||| | |||| | ||||||||| ||||| ||||||||| ||||||||||| |||||||||| | |||||| || ||||||||||    
T  9778624 ctatgaagcacggacactccttggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacacgacaccgacacttgtaattatactgaattatgtg 9778525  T
Q  179 attt 182  Q
    ||||    
T  9778524 attt 9778521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 43027404 - 43027507
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||  |||||| |||||| | ||||||||| ||||| ||||||||||||||| ||||| |||||||||| | || |||||| | ||||||||    
T  43027404 ctatgaagcacggacactcatcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacacgacaccgacacttgtatttacactgcattatgtg 43027503  T
Q  179 attt 182  Q
    ||||    
T  43027504 attt 43027507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 92 - 222
Target Start/End: Complemental strand, 13770802 - 13770672
Alignment:
Q  92 acactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgatttcttaaaaaa 191  Q
    ||||||||||||| | |||||| || ||||| ||||||||| ||||||||||| ||| |||||| | ||||||||| ||||||||| |||| || |||      
T  13770802 acactcttcggattaggcgtgttccggtgtcggacacgtgttgtgtccgacacgacaacgacacttgtaattacactgaattatgtaatttttttaaatt 13770703  T
Q  192 tttagttttgtcagcgtgtcagtgtccgtgt 222  Q
     |||| | |||| |||| |||||||||||||    
T  13770702 attagctgtgtcggcgtatcagtgtccgtgt 13770672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 80 - 162
Target Start/End: Original strand, 20545185 - 20545267
Alignment:
Q  80 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataat 162  Q
    ||||||||||| |||||| ||| || || |||||||||||||| |||| ||||||||| |||||| |||||||||||||||||    
T  20545185 tatgaagcacagacactcctcgaattaaacgtgtccccgtgtcggacatgtgtcgtgtacgacacgacaccgacacatataat 20545267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 241
Target Start/End: Complemental strand, 15680928 - 15680771
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||  |||||| ||| || |  |||||| | ||||| |||||||||||||||||||||     |||||| |||||||||||  |||||||||    
T  15680928 ctatgaagcacggacactcctcgaattagacgtgtctcggtgtcggacacgtgtcgtgtccgacac-----cgacacttataattacactaaattatgtg 15680834  T
Q  179 atttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcatag 241  Q
    |||| ||  ||   |||| | |||| |||||||||||||| ||| | ||||||||||||||||    
T  15680833 attttttttaattattagctatgtcggcgtgtcagtgtccatgtccgtatccgtgcttcatag 15680771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 166
Target Start/End: Original strand, 21138931 - 21139018
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattaca 166  Q
    ||||||||||| |||||||    ||| ||||||||||  ||||| ||||||| || |||||||||| |||||||||||||||||||||    
T  21138931 ctatgaagcacgaacactcccttgattaagcgtgtcctggtgtcggacacgtatcatgtccgacacgacaccgacacatataattaca 21139018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 5835368 - 5835268
Alignment:
Q  77 aactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatg 176  Q
    |||||| ||||| |||||||  |||||| ||||||||||| || |||||||| |||| |||| |     |||||||||||||||||||||| ||||||||    
T  5835368 aactataaagcaaaaacacttctcggattaagcgtgtcccggtatcagacacatgtcatgtctg-----acaccgacacatataattacactgaattatg 5835274  T
Q  177 tgattt 182  Q
    | ||||    
T  5835273 ttattt 5835268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 640170 - 640126
Alignment:
Q  146 acaccgacacatataattacaccgaattatgtgatttcttaaaaa 190  Q
    |||||||||||||||||||||| |||||||||||||| |||||||    
T  640170 acaccgacacatataattacactgaattatgtgatttgttaaaaa 640126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 15902887 - 15902843
Alignment:
Q  138 ccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||||||||||||||||||||||||||||  |||||||||||||    
T  15902887 ccgacacaacaccgacacatataattacactaaattatgtgattt 15902843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 22602705 - 22602748
Alignment:
Q  139 cgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||| |||||||||||||||||||||| ||||||||||||||    
T  22602705 cgacacgacaccgacacatataattacactgaattatgtgattt 22602748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 24339772 - 24339663
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccg------acacaacaccgacacatataattacaccgaat 172  Q
    |||||||||||   ||||| |||||| | ||||||||| ||||| || ||||||||||||||      |||| |||||||||| | ||||||||| ||||    
T  24339772 ctatgaagcacgggcactcctcggattaggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaat 24339673  T
Q  173 tatgtgattt 182  Q
    ||||||||||    
T  24339672 tatgtgattt 24339663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 1656721 - 1656676
Alignment:
Q  158 ataattacaccgaattatgtgatttcttaaaaaatttagttttgtc 203  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||    
T  1656721 ataattacactgaattatgtgattttttaaaaaatttagttgtgtc 1656676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 7758415 - 7758350
Alignment:
Q  110 gtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattat 175  Q
    |||||| ||| |||||||| ||| ||||||||||| ||||||||||| ||||||| || |||||||    
T  7758415 gtgtccacgtatcagacacatgtggtgtccgacacgacaccgacacacataattatactgaattat 7758350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 5548745 - 5548697
Alignment:
Q  134 gtgtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||||||||| |||| ||||||||||||||||| ||||||| ||||||    
T  5548745 gtgtccgacacgacactgacacatataattacactgaattatttgattt 5548697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 16341565 - 16341517
Alignment:
Q  134 gtgtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||||||||| |||||| |||||||||||||||  |||||||||||||    
T  16341565 gtgtccgacacgacaccggcacatataattacacttaattatgtgattt 16341517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 21864927 - 21864863
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgaca 143  Q
    |||||||||||| |||||| ||| || |  |||||||| ||||| ||||||||||||||||||||    
T  21864927 ctatgaagcacagacactcctcgaattagacgtgtcccggtgtcggacacgtgtcgtgtccgaca 21864863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 18013070 - 18013152
Alignment:
Q  140 gacacaacaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    ||||| |||| ||||||||||||||||| ||||||||| |||| || |||   |||||  ||||||  |||||||||||||||    
T  18013070 gacacgacactgacacatataattacactgaattatgtaatttttttaaattattagtagtgtcagaatgtcagtgtccgtgt 18013152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 32287404 - 32287501
Alignment:
Q  80 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtga 179  Q
    ||||||||||  |||||| |||||| | | ||||||| ||||| ||||| |||| ||||||||||     ||||||||||| || ||| |||||||||||    
T  32287404 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacttgtcatgtccgacac-----cgacacatatacttgcactgaattatgtga 32287498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 598327 - 598262
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 144  Q
    |||||||||||  |||||  |||||| | ||||||||| ||||| ||||||||||||||| |||||    
T  598327 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacac 598262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 17851489 - 17851452
Alignment:
Q  145 aacaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  17851489 aacacagacacatataattacactgaattatgtgattt 17851452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 4e-22; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 26902104 - 26902213
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgac------acaacaccgacacatataattacaccgaat 172  Q
    |||||||||||  |||||| || ||||| ||||||||||||| |||||||||||||||||||||      || |||||||||||||||||||||| ||||    
T  26902104 ctatgaagcacggacactcctcagataaggcgtgtccccgtgccagacacgtgtcgtgtccgacactcatacgacaccgacacatataattacactgaat 26902203  T
Q  173 tatgtgattt 182  Q
    ||||||||||    
T  26902204 tatgtgattt 26902213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 79 - 241
Target Start/End: Original strand, 36450694 - 36450851
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||| |||||| |||||| | ||||||||  ||||| |||||| ||||||||||||||     | |||| | ||||||||| ||||| ||||    
T  36450694 ctatgaagcacagacactcctcggattaggcgtgtcctggtgtcggacacgcgtcgtgtccgacac-----ctacacttgtaattacactgaattctgtg 36450788  T
Q  179 atttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcatag 241  Q
    |||| || |||   |||||| |||| |||||||||||||||||| | ||||||||||||||||    
T  36450789 attttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtccgtatccgtgcttcatag 36450851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 16641906 - 16642008
Alignment:
Q  76 aaactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattat 175  Q
    ||||||||||||||| |||||| |||||| | | ||||||| |||| |||||| ||||||||||||||| ||||||||||||||||  ||||  ||||||    
T  16641906 aaactatgaagcacagacactcctcggattaggtgtgtcccggtgttagacacatgtcgtgtccgacacgacaccgacacatataacgacactaaattat 16642005  T
Q  176 gtg 178  Q
    |||    
T  16642006 gtg 16642008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 34450960 - 34451026
Alignment:
Q  78 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 144  Q
    ||||||||||||  |||||| | |||||| |||||||||||||||||||||||||||||||||||||    
T  34450960 actatgaagcacggacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacac 34451026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 79 - 198
Target Start/End: Complemental strand, 18964309 - 18964182
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgt------ccgacac--aacaccgacacatataattacaccga 170  Q
    |||||||||||| |||||| |||||||| ||||||| |||||| ||||| |||||||||      |||||||   |||||||||||||||||||||  ||    
T  18964309 ctatgaagcacagacactcctcggataaggcgtgtctccgtgttagacaggtgtcgtgttcaacgccgacacgacacaccgacacatataattacattga 18964210  T
Q  171 attatgtgatttcttaaaaaatttagtt 198  Q
    ||||||||||||  ||||||| ||||||    
T  18964209 attatgtgattttctaaaaaaattagtt 18964182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 43737752 - 43737849
Alignment:
Q  80 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtga 179  Q
    ||||||||||  |||||| | |||||| |||| |||||||||||||||| |||||||||||     |||||||||||||||||||||| | ||| |||||    
T  43737752 tatgaagcacggacactccttggataaggcgtatccccgtgtcagacacctgtcgtgtccg-----acaccgacacatataattacactgtattttgtga 43737846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 8343446 - 8343381
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 144  Q
    |||||||||||| ||||||||||||| | ||||||||| ||||| ||||||||||||||| |||||    
T  8343446 ctatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacacgtgtcgtgtcggacac 8343381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 220
Target Start/End: Original strand, 15816058 - 15816205
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaa------caccgacacatataattacaccgaat 172  Q
    |||||||||||  |||||  |||||| | ||||||||| ||||| ||  ||||||||||||||||| |      ||||||||| |||||||||||  |||    
T  15816058 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggattcgtgtcgtgtccgacaccaacacgacaccgacacttataattacactaaat 15816157  T
Q  173 tatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgt 220  Q
    |||||||||| || |||   |||||| |||| ||||||||||||||||    
T  15816158 tatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtccgt 15816205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 24858135 - 24858033
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    ||||||||||||||||||| || ||| | ||||||||| | ||  ||||| ||||||||||||||| ||| |||||| | | ||||||| ||||||||||    
T  24858135 ctatgaagcacaaacactcctctgattaggcgtgtcccggcgtgggacacatgtcgtgtccgacacgacaacgacacttgt-attacactgaattatgtg 24858037  T
Q  179 attt 182  Q
    ||||    
T  24858036 attt 24858033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 3025668 - 3025572
Alignment:
Q  81 atgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgat 180  Q
    |||||||||  |||||| |||||| |  |||||| | |||||||||||||||||||||||||||      ||||| ||||||||||| ||||||||||||    
T  3025668 atgaagcacggacactcctcggattagccgtgtcacagtgtcagacacgtgtcgtgtccgacact-----gacacctataattacactgaattatgtgat 3025574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 926730 - 926793
Alignment:
Q  81 atgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 144  Q
    |||||||||  |||||| ||||||||||| |||||| ||||| ||||||||||| |||||||||    
T  926730 atgaagcacggacactcctcggataaagcatgtcccggtgtcggacacgtgtcgcgtccgacac 926793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 241
Target Start/End: Complemental strand, 14134756 - 14134661
Alignment:
Q  146 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcatag 241  Q
    ||||||||| |||||||||||| ||||||||||||||  | |||   ||||| |||||  |||||| ||||| |||| | ||||||||||||||||    
T  14134756 acaccgacatatataattacactgaattatgtgattttctcaaattattagtattgtcgacgtgtccgtgtcggtgtccgtatccgtgcttcatag 14134661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 22652106 - 22651957
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccg------acacaacaccgacacatataattacaccgaat 172  Q
    |||||||||||  |||||| |||||| |  |||||||| ||||| ||||| |||||||||||      |||| |||||||||| | |||||| |  ||||    
T  22652106 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtcgtgtccgacaccgacacgacaccgacacttgtaattatattgaat 22652007  T
Q  173 tatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    |||||||||| || |||   |||| | |||| ||||||||||||||||||    
T  22652006 tatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgt 22651957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 222
Target Start/End: Original strand, 29510233 - 29510382
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgt------ccgacacaacaccgacacatataattacaccgaat 172  Q
    |||||||||||  |||||| |||||| | | ||||||| ||||| |||||| |||||||      ||||||| |||||||||| | |||||| || ||||    
T  29510233 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacactacaccgacacttgtaattatactgaat 29510332  T
Q  173 tatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    | |||||||| || |||   |||| | |||| ||||||||||||||||||    
T  29510333 tttgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgt 29510382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 11803321 - 11803280
Alignment:
Q  141 acacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||||||| |||||||||||||||| ||||||||||||||    
T  11803321 acacaacaccaacacatataattacactgaattatgtgattt 11803280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 11927083 - 11927124
Alignment:
Q  141 acacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  11927083 acacgacaccgacacatataattacactgaattatgtgattt 11927124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 34223017 - 34222968
Alignment:
Q  133 cgtgtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||||||||| | ||||||||||||||||||||  |||||||||||||    
T  34223017 cgtgtccgacaccataccgacacatataattacacttaattatgtgattt 34222968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 4786340 - 4786376
Alignment:
Q  146 acaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||||||||||||||||||| ||||||||||||||    
T  4786340 acaccgacacatataattacactgaattatgtgattt 4786376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 8847313 - 8847277
Alignment:
Q  146 acaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||||||||||||||||||| ||||||||||||||    
T  8847313 acaccgacacatataattacactgaattatgtgattt 8847277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 3951476 - 3951574
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||  | |||| | |||| | |||||| |||||||||||||||||||||||| |     |||||||||||||||| ||||| | ||| ||||    
T  3951476 ctatgaagcacggaaactccttggattaggcgtgttcccgtgtcagacacgtgtcgtgtctg-----acaccgacacatataagtacactgcattttgtg 3951570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 22493555 - 22493508
Alignment:
Q  142 cacaacaccgacacatataattacaccgaattatgtgatttcttaaaa 189  Q
    ||||||||||||| |||| ||||||| |||||||||||||| ||||||    
T  22493555 cacaacaccgacatatatgattacactgaattatgtgattttttaaaa 22493508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 11944795 - 11944686
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgaca------caacaccgacacatataattacaccgaat 172  Q
    ||||||||||| ||||||| |||||| | ||||||| | ||||| || || ||||||||  ||||      | |||||||||||||||||||||| || |    
T  11944795 ctatgaagcacgaacactcatcggattaggcgtgtctcggtgtcggatacatgtcgtgtatgacatcaacacgacaccgacacatataattacactgagt 11944696  T
Q  173 tatgtgattt 182  Q
    ||||||||||    
T  11944695 tatgtgattt 11944686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 31109574 - 31109616
Alignment:
Q  200 tgtcagcgtgtcagtgtccgtgttcatatccgtgcttcataga 242  Q
    |||| |||||||||||||||||| |||||| ||||||||||||    
T  31109574 tgtcggcgtgtcagtgtccgtgtccatatcagtgcttcataga 31109616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 3677845 - 3677800
Alignment:
Q  144 caacaccgacacatataattacaccgaattatgtgatttcttaaaa 189  Q
    ||||||||| |||||||||||||  |||||||||||||| ||||||    
T  3677845 caacaccgatacatataattacatagaattatgtgattttttaaaa 3677800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 8343086 - 8343037
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacac 128  Q
    |||||||||||| ||||||||||||| | ||||||||| ||||| |||||    
T  8343086 ctatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacac 8343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 33405354 - 33405418
Alignment:
Q  109 cgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||  |||||||||| ||||||||||||||||     ||||||||||||||||||  |||||||||    
T  33405354 cgtgtccaggtgtcagacatgtgtcgtgtccgacac-----cgacacatataattacactaaattatgtg 33405418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 3e-20; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 5414100 - 5414250
Alignment:
Q  78 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtcc------gacacaacaccgacacatataattacaccgaa 171  Q
    ||||||||||||  |||||| | |||||| | ||||||| ||||||||||||||||||||||      ||||| ||||||| |||||||||||||| | |    
T  5414100 actatgaagcacggacactccttggataaggtgtgtccctgtgtcagacacgtgtcgtgtccgacactgacacgacaccgatacatataattacactgca 5414199  T
Q  172 ttatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    || ||||||||  ||||||| |||| | |||| ||||||| ||||||||||    
T  5414200 ttttgtgattttctaaaaaaattagctgtgtcggcgtgtccgtgtccgtgt 5414250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 36635449 - 36635345
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac-aacaccgacacatataattacaccgaattatgt 177  Q
    |||||||||||  ||||||||||||| | ||||||||| ||||| ||| ||||||||||| |||||  ||||  |||||||||||||||| |||||||||    
T  36635449 ctatgaagcacggacactcttcggattaggcgtgtcccggtgtctgacgcgtgtcgtgtctgacactcacacgaacacatataattacactgaattatgt 36635350  T
Q  178 gattt 182  Q
    |||||    
T  36635349 gattt 36635345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 19482798 - 19482649
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtcc------gacacaacaccgacacatataattacaccgaat 172  Q
    ||||||||||| ||||||| |||||| | | ||||||| ||||| ||||||||||||||||      ||||| ||||| |||| | ||||||||||||||    
T  19482798 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgtgtcgtgtccaataccgacacgacaccaacacttgtaattacaccgaat 19482699  T
Q  173 tatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    |||||||| | || |||   |||||| |||| ||||||||||||| ||||    
T  19482698 tatgtgatattttcaaattattagttgtgtcggcgtgtcagtgtctgtgt 19482649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 79 - 241
Target Start/End: Original strand, 19097835 - 19097995
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||| |||||||| || ||| |||||||||||||||||||||||||| ||| ||     ||||||||| ||||||||| || |||||| |||    
T  19097835 ctatgaagcacagacactctttgg-taaggcgtgtccccgtgtcagacacgtgtcatgttcg-----acaccgacaaatataattatactgaattacgtg 19097928  T
Q  179 atttcttaaaaaatt----tagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcatag 241  Q
    ||||  ||||||| |    ||||| |||| |||||||||||| | |||  ||||| |||||||||||    
T  19097929 attttctaaaaaaataaaatagttgtgtctgcgtgtcagtgttcatgtctatatcagtgcttcatag 19097995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 23292925 - 23293064
Alignment:
Q  78 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgt 177  Q
    ||||||||||||  |||||| |||||| | ||||||||| ||||| |||||||||||||||||     |||||||||| | |||||| || |||||||||    
T  23292925 actatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccg-----acaccgacacttgtaattatactgaattatgt 23293019  T
Q  178 gatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    ||||| || |||   |||| | |||| |||||||| |||||||||    
T  23293020 gattttttcaaattattagctgtgtcggcgtgtcattgtccgtgt 23293064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 3947702 - 3947804
Alignment:
Q  80 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtga 179  Q
    ||||||||||  |||||| |||||| | | ||||||  ||||| ||||||||||||||||||||| |||| ||||| | ||||||||| |||||||| ||    
T  3947702 tatgaagcacggacactcctcggattaggtgtgtcctggtgtcggacacgtgtcgtgtccgacacgacactgacacttgtaattacactgaattatgcga 3947801  T
Q  180 ttt 182  Q
    |||    
T  3947802 ttt 3947804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 30982808 - 30982916
Alignment:
Q  80 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgt------ccgacacaacaccgacacatataattacaccgaatt 173  Q
    ||||||||||  |||||||| |||| | ||||||||| ||||| ||||||||||||||      ||||||| |||||||||| ||||||||||| ||| |    
T  30982808 tatgaagcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattacactgaaat 30982907  T
Q  174 atgtgattt 182  Q
    |||||||||    
T  30982908 atgtgattt 30982916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 619 - 707
Target Start/End: Complemental strand, 24399167 - 24399079
Alignment:
Q  619 actcaccaaaaggaaaattccatgatgagattatgaggactagaccaagaggctcagcaacaatttctgcacttgaaagtagtgctatt 707  Q
    |||||||||| || |||||||| ||||| || |||||||| ||||| | |||||||  ||||||||||||||||||||| | |||||||    
T  24399167 actcaccaaagggcaaattccaagatgaaataatgaggacgagacccaaaggctcatgaacaatttctgcacttgaaagcaatgctatt 24399079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 46083919 - 46084029
Alignment:
Q  78 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtcc------gacacaacaccgacacatataattacaccgaa 171  Q
    |||||||||||   |||||| ||  |||| ||||||||||| ||||||||||||||||||||      ||||| ||||||||||||||||||||||   |    
T  46083919 actatgaagcatggacactcctcttataaggcgtgtccccgcgtcagacacgtgtcgtgtccgatactgacacgacaccgacacatataattacactaga 46084018  T
Q  172 ttatgtgattt 182  Q
    |||||||||||    
T  46084019 ttatgtgattt 46084029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 49431132 - 49431047
Alignment:
Q  92 acactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||| |||||||| ||||||||| ||||  |||||||||||||||||     |||||||||| | ||||||||| ||||||||||||||    
T  49431132 acactcctcggataaggcgtgtcccggtgttggacacgtgtcgtgtccg-----acaccgacacttttaattacactgaattatgtgattt 49431047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 12797277 - 12797415
Alignment:
Q  78 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgt 177  Q
    |||| ||||||| |||| || |||||| |  | |||||| |||||||||| || |||||||||||||     |||||| | ||||||||| |||||||||    
T  12797277 actacgaagcacgaacattcctcggattagacttgtcccggtgtcagacatgtatcgtgtccgacac-----cgacacttgtaattacactgaattatgt 12797371  T
Q  178 gatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    ||||| || |||   ||||||||| | ||||||||||||||||||    
T  12797372 gattt-ttcaaattattagttttgccggcgtgtcagtgtccgtgt 12797415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 12895214 - 12895312
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    ||||||||||| ||||||| |||||| | |||||||||  |||| || || |||||||||||     |||||||||| |||||||||||  |||||||||    
T  12895214 ctatgaagcacgaacactcctcggattaggcgtgtcccgatgtcggatacatgtcgtgtccg-----acaccgacacttataattacacaaaattatgtg 12895308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 15659752 - 15659798
Alignment:
Q  136 gtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||||||| ||||| ||||||||||||||||||||||||| |||||    
T  15659752 gtccgacacgacaccaacacatataattacaccgaattatgagattt 15659798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 22234819 - 22234928
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtc------cgacacaacaccgacacatataattacaccgaat 172  Q
    ||||||||||| ||||||  |||||| |   ||||||  ||||| |||||||||||||||      |||||| ||||||||||||| |||||||| ||||    
T  22234819 ctatgaagcacgaacacttctcggattagctgtgtcctggtgtcggacacgtgtcgtgtcagacaccgacacgacaccgacacatagaattacactgaat 22234918  T
Q  173 tatgtgattt 182  Q
    ||||||||||    
T  22234919 tatgtgattt 22234928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 447 - 521
Target Start/End: Complemental strand, 24399479 - 24399405
Alignment:
Q  447 caactctgaaggttttagtactgcaacatttccagcagctatggctccaattaatggctccaaggacagtcctgt 521  Q
    |||||||||||||||||  |||||  |||||||||||||||| ||||| || | ||||||||| |||| ||||||    
T  24399479 caactctgaaggttttaacactgctgcatttccagcagctatagctcctatcagtggctccaaagacactcctgt 24399405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 35157923 - 35158064
Alignment:
Q  77 aactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatg 176  Q
    |||||||||||||  |||||  |||||| |||||||| || ||||  |||| |||||||||| |     |||||||||| |||||||||||  |||||||    
T  35157923 aactatgaagcacggacacttctcggattaagcgtgttccggtgttggacatgtgtcgtgtcag-----acaccgacacttataattacactaaattatg 35158017  T
Q  177 tgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgtt 223  Q
    |||||| |  |||   ||||||  ||| |||||||||||||||||||    
T  35158018 tgatttttccaaattattagttgcgtcggcgtgtcagtgtccgtgtt 35158064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 715545 - 715645
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||  |||||| |||||| | ||||||||| ||||| |||| |||||||||   |||  ||||| |||| | ||||||||| ||||||||||    
T  715545 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgt---acaagacaccaacacttgtaattacactgaattatgtg 715641  T
Q  179 attt 182  Q
    ||||    
T  715642 attt 715645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 752871 - 752971
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||  |||||| |||||| | ||||||||| ||||| |||| |||||||||   |||  ||||| |||| | ||||||||| ||||||||||    
T  752871 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgt---acaagacaccaacacttgtaattacactgaattatgtg 752967  T
Q  179 attt 182  Q
    ||||    
T  752968 attt 752971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 28964186 - 28964286
Alignment:
Q  77 aactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatg 176  Q
    ||||||||||||   |||||| |||||| | ||||||||| ||||| || | |||||||||||||||||     ||||| | ||||||||| ||||||||    
T  28964186 aactatgaagcatggacactcctcggattaggcgtgtcccagtgtcggatatgtgtcgtgtccgacaca-----gacacttgtaattacactgaattatg 28964280  T
Q  177 tgattt 182  Q
    ||||||    
T  28964281 tgattt 28964286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 240
Target Start/End: Original strand, 12895055 - 12895211
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||  |||||||||| || | |||| |||| ||||| |    |||||||||||||||| |||||||||| | |||||||   ||||||||||    
T  12895055 ctatgaagcacggacactcttcgaattaggcgtatcccggtgtcgg----gtgtcgtgtccgacacgacaccgacacttgtaattactttgaattatgtg 12895150  T
Q  179 atttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcata 240  Q
    |||| || |||   |||| | | || ||||||| |||||||||| | |||| ||||||||||    
T  12895151 attttttcaaattattagctgtttcggcgtgtc-gtgtccgtgtccgtatctgtgcttcata 12895211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 18513175 - 18513279
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcg-tgtccgacacaacaccgacacatataattacaccgaattatgt 177  Q
    |||||||||||  |||||| || ||| | ||||||||  ||||| |||||  |||| ||||||||||||||| ||||||||| ||||||  |||||||||    
T  18513175 ctatgaagcacggacactcctcagattaggcgtgtcctggtgtcggacacacgtcggtgtccgacacaacactgacacatatgattacattgaattatgt 18513274  T
Q  178 gattt 182  Q
     ||||    
T  18513275 cattt 18513279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 18576039 - 18576075
Alignment:
Q  146 acaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||| |||||||||||||||||||||||||||||||    
T  18576039 acaccaacacatataattacaccgaattatgtgattt 18576075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 29205587 - 29205527
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtcc 139  Q
    ||||||||||| ||||||| |||||| | ||||||||| ||||| |||| |||||||||||    
T  29205587 ctatgaagcacgaacactcctcggattaggcgtgtcccagtgtcggacatgtgtcgtgtcc 29205527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 40179638 - 40179714
Alignment:
Q  146 acaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    |||||||| ||||||||||||| |||||||||||||| || |||   ||| |  ||||| |||||||||||||||||    
T  40179638 acaccgacgcatataattacactgaattatgtgattttttcaaactattaatggtgtcaacgtgtcagtgtccgtgt 40179714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 54580008 - 54580087
Alignment:
Q  124 gacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgatttcttaaaaaatttagttttgtcagcgt 208  Q
    |||||||||||||||||||||     |||||| ||||||||||| |||||||||||||| || |||   |||||| |||||||||    
T  54580008 gacacgtgtcgtgtccgacac-----cgacacttataattacactgaattatgtgattttttcaaattattagttgtgtcagcgt 54580087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 28084640 - 28084543
Alignment:
Q  82 tgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgatt 181  Q
    ||||||||  |||||| |||||| | ||||||||| ||||| ||||||||||    ||||||| |||| ||||| | ||||||||  |||||||||||||    
T  28084640 tgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtca---ccgacacgacacagacacttgtaattacattgaattatgtgatt 28084544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 239
Target Start/End: Complemental strand, 30299004 - 30298910
Alignment:
Q  146 acaccgacacatataattacaccgaattatgtgatttcttaaaaaat-ttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcat 239  Q
    |||||||||| | ||||||||| ||||||||| |||| ||  ||| | |||| | |||| |||||||||||||||||| | |||| |||||||||    
T  30299004 acaccgacacttgtaattacactgaattatgtcatttttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatctgtgcttcat 30298910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 239
Target Start/End: Complemental strand, 30327872 - 30327778
Alignment:
Q  146 acaccgacacatataattacaccgaattatgtgatttcttaaaaaat-ttagttttgtcagcgtgtcagtgtccgtgttcatatccgtgcttcat 239  Q
    |||||||||| | ||||||||| ||||||||| |||| ||  ||| | |||| | |||| |||||||||||||||||| | |||| |||||||||    
T  30327872 acaccgacacttgtaattacactgaattatgtcatttttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatctgtgcttcat 30327778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 5654502 - 5654567
Alignment:
Q  78 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgaca 143  Q
    ||||||||||||||| ||||||||||| | |||| | || ||||| || |||| ||||||||||||    
T  5654502 actatgaagcacaaatactcttcggattaggcgtattccggtgtcggatacgtatcgtgtccgaca 5654567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 29205533 - 29205465
Alignment:
Q  109 cgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||||| ||||| |||| |||||||||||     ||||||||||| | ||||||||| ||||||||||||||    
T  29205533 cgtgtcccggtgtcggacatgtgtcgtgtcc-----aacaccgacacttgtaattacactgaattatgtgattt 29205465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 34306744 - 34306809
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 144  Q
    ||||||||||| |||| || || ||| | ||||||| | ||||| |||||||||||||||||||||    
T  34306744 ctatgaagcacgaacattcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacac 34306809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 40613504 - 40613471
Alignment:
Q  149 ccgacacatataattacaccgaattatgtgattt 182  Q
    ||||||||||||||||||| ||||||||||||||    
T  40613504 ccgacacatataattacactgaattatgtgattt 40613471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 47264116 - 47264051
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 144  Q
    |||||||||||| || |||||||||| | ||||||||  |||||||||| ||||||| || |||||    
T  47264116 ctatgaagcacagacgctcttcggattaggcgtgtcctggtgtcagacatgtgtcgtatctgacac 47264051  T

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Target: scaffold0171 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 23494 - 23441
Alignment:
Q  129 gtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||||||||||||||| |||||||||| ||||||||||| ||||||||||||||    
T  23494 gtgtcgtgtccgacacgacaccgacacttataattacactgaattatgtgattt 23441  T

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Target: scaffold0306 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 222
Target Start/End: Complemental strand, 13523 - 13381
Alignment:
Q  81 atgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgaca-caacaccgacacatataattacaccgaattatgtga 179  Q
    |||||||||  |||||| | |||| | | ||||||  ||||||||| |||||||||||||||| | |||||||| | | ||||| ||| |||||||||||    
T  13523 atgaagcacggacactccttggattaggtgtgtcctagtgtcagacgcgtgtcgtgtccgacaccgacaccgacccttgtaattgcactgaattatgtga 13424  T
Q  180 tttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    |||  | |||   |||||| |||| ||||||||||||||||||    
T  13423 ttttctcaaattattagttgtgtcggcgtgtcagtgtccgtgt 13381  T

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Target: scaffold0152 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 222
Target Start/End: Original strand, 21804 - 21946
Alignment:
Q  81 atgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgaca-caacaccgacacatataattacaccgaattatgtga 179  Q
    |||||||||  |||||| | |||| | | ||||||  ||||||||| |||||||||||||||| | |||||||| | | ||||| ||| |||||||||||    
T  21804 atgaagcacggacactccttggattaggtgtgtcctagtgtcagacgcgtgtcgtgtccgacaccgacaccgacccttgtaattgcactgaattatgtga 21903  T
Q  180 tttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    |||  | |||   |||||| |||| ||||||||||||||||||    
T  21904 ttttctcaaattattagttgtgtcggcgtgtcagtgtccgtgt 21946  T

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Target: scaffold0003 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 241724 - 241575
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccg------acacaacaccgacacatataattacaccgaat 172  Q
    |||||||||||  |||||  |||||| | ||||||||| ||||| |||||||||||||||||      |||| ||||||||||  ||||||||||  |||    
T  241724 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccaacacgacaccgacactcataattacactaaat 241625  T
Q  173 tatgtgatttcttaaaaaatttagttttgtcagcgtgtcagtgtccgtgt 222  Q
    |||||||||| |  |||   |||| | |||| ||||||||||||||||||    
T  241624 tatgtgatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgt 241575  T

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Target: scaffold0227 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 15090 - 15045
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcag 124  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||    
T  15090 ctatgaagcacaaacactcctcggataaggcgtgtccccgtgtcag 15045  T

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Target: scaffold0050 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 70394 - 70299
Alignment:
Q  82 tgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtgatt 181  Q
    |||||||| ||||||| |||||| | || |||||  ||||| |||||||||||||||||     |||||||||| ||||||||||| ||||||||| |||    
T  70394 tgaagcacgaacactcatcggattaggcatgtcctggtgtcggacacgtgtcgtgtccg-----acaccgacacttataattacactgaattatgttatt 70300  T

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Target: scaffold0020 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 135302 - 135350
Alignment:
Q  134 gtgtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||||||||    
T  135302 gtgtcggacacgacaccgacacatataattacacagaattatgtgattt 135350  T

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Target: scaffold0123 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 44454 - 44563
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtcc------gacacaacaccgacacatataattacaccgaat 172  Q
    |||||||||||| |||||  || ||| || | |||||| ||||| ||||||||| ||||||      ||||| | |||||||||||||||||||| ||||    
T  44454 ctatgaagcacagacacttctcagattaaccatgtcccagtgtcggacacgtgttgtgtccaacaccgacacgataccgacacatataattacactgaat 44553  T
Q  173 tatgtgattt 182  Q
    ||||||||||    
T  44554 tatgtgattt 44563  T

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Target: scaffold0793 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 4821 - 4921
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtg 178  Q
    |||||||||||  |||||| |||||| | ||||||||| ||||| |||| |||||||||   |||  ||||| |||| | ||||||||| ||||||||||    
T  4821 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgt---acaagacaccaacacttgtaattacactgaattatgtg 4917  T
Q  179 attt 182  Q
    ||||    
T  4918 attt 4921  T

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Target: scaffold0036 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 9678 - 9785
Alignment:
Q  81 atgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaa------caccgacacatataattacaccgaatta 174  Q
    |||||||||  |||||| |||||| |  ||||||||  ||||||||| |||||||||| ||||| |      ||||||||||||||||||||| ||||||    
T  9678 atgaagcacggacactcctcggattatacgtgtcccgatgtcagacaagtgtcgtgtctgacaccaacacgacaccgacacatataattacactgaatta 9777  T
Q  175 tgtgattt 182  Q
     |||||||    
T  9778 agtgattt 9785  T

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Target: scaffold0110 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 28918 - 28871
Alignment:
Q  135 tgtccgacacaacaccgacacatataattacaccgaattatgtgattt 182  Q
    |||| |||||||||||||||||||||||||||  |||||||| |||||    
T  28918 tgtctgacacaacaccgacacatataattacattgaattatgcgattt 28871  T

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Target: scaffold0083 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 177
Target Start/End: Original strand, 45465 - 45563
Alignment:
Q  74 gaaaactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaatt 173  Q
    |||| |||||||||||  ||| |||| |||| | || |||| | |||||||||||||||||||||||     |||||||||| | ||||||||| |||||    
T  45465 gaaatctatgaagcacgtacaatctttggattaggcatgtcgcggtgtcagacacgtgtcgtgtccg-----acaccgacacttgtaattacactgaatt 45559  T

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Target: scaffold0652 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 403 - 500
Alignment:
Q  80 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacaccgaattatgtga 179  Q
    ||||||||||  |||||| |||||| | | ||||||| ||||| |||||| ||||||||||     |||||||||| | ||||||||| ||||| |||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccg-----acaccgacacttgtaattacactgaattttgtga 497  T

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Target: scaffold0512 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 4976 - 5041
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 144  Q
    |||||||||||| |||||| |||||| | || |||| |  |||| |||||||||||||||||||||    
T  4976 ctatgaagcacagacactcctcggattaggcatgtctcaatgtcggacacgtgtcgtgtccgacac 5041  T

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Target: scaffold0019 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 71855 - 71790
Alignment:
Q  79 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 144  Q
    |||||||||||  |||||| |||||| |  |||||||| ||||| ||||||||| |||||||||||    
T  71855 ctatgaagcaccgacactcctcggattagtcgtgtcccggtgtcggacacgtgttgtgtccgacac 71790  T

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