View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970-Insertion-10 (Length: 527)
Name: NF4970-Insertion-10
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970-Insertion-10 |
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Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 8 - 494
Target Start/End: Original strand, 1175574 - 1176071
Alignment:
| Q |
8 |
cttgcaagttttccatgtagccatccaccaggaagagaaagagccaaagcggtggctcgaccggagataatgaaggaggctcttcttttgtataatgatg |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1175574 |
cttgcaagttttccatgtagccatccaccaggaagagaaagagccaaagcggtggctcgaccggagataatgaaggaggctcttcttttgtattatgatg |
1175673 |
T |
|
| Q |
108 |
tcagagtaagccattgggttgaatgatttcattcttcaggacactatattcatcacctccagaaactacaaagtgcattcacattagaaaaggtttttat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
1175674 |
tcagagtaagccattgggttgaatgatttcattcttcaggacactatattcaccacctccagaaactacaaagtgcattcgcattagaaaaggttttcat |
1175773 |
T |
|
| Q |
208 |
ttttagttaacttctatgtttgcttcgatctctgtgtaattttgccaatgnnnnnnnnccattgcactagtac---cattataagagtaaatattcatga |
304 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
1175774 |
ttttagttaacttctatgtttgcttcgatctc--tgtaattttgccaataaaaaaaaaccattgcactagtaccatcattataagagtaaatattcatga |
1175871 |
T |
|
| Q |
305 |
acacacactttcccctaccacccatatacacacacctagatggcatttgttattannnnnnnnattttattaatgcaagaaaaacacagcaacagtggcc |
404 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1175872 |
acacacattttcccctaccacccatatacacacacctagatggcatttgttattattttttttattttattaatgcaagaaaaacacagcaacagtggcc |
1175971 |
T |
|
| Q |
405 |
----------tttattatttattttatcaatgcaagaaaaacaaacacgagtctttcccttcgctttcttctctctcatttctccatctccacatatcac |
494 |
Q |
| |
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| T |
1175972 |
tttattattatttattatttattttatcaatgcaagaaaaacaaacacgagtctttcccttcgctctcttctttctcatttctccatctccacatatcac |
1176071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 25 - 288
Target Start/End: Complemental strand, 1237850 - 1237579
Alignment:
| Q |
25 |
tagccatccaccaggaagagaaagagccaaagcggtggctcgaccggagataatgaaggaggctcttcttttgtataatgatgtcagagtaagccattgg |
124 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||| ||| | | || |
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|
| T |
1237850 |
tagccatccatcaggtagagaaagagccaaagcggtggctcgaccagagataatgaaggaagctcttcttttatataatgattatagaggaaggcgtggg |
1237751 |
T |
|
| Q |
125 |
gttgaatgatttcattcttcaggacactatattcatcacctccagaaactacaaagtgcattc-------ac-attagaaaaggtttttatttttagtta |
216 |
Q |
| |
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|||||||||||||||||||||||||| |||||| || |||| |||||||| ||||||||| || |||||||||||||||||||||||||| |
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| T |
1237750 |
gttgaatgatttcattcttcaggacaggtcattcattacatccacaaactacagagtgcattctgttgaaacttttagaaaaggtttttatttttagtta |
1237651 |
T |
|
| Q |
217 |
acttctatgtttgcttcgatctctgtgtaattttgccaatgnnnnnnnnccattgcactagtaccattataa |
288 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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|
| T |
1237650 |
acttctatgtttgcttcgatctctgtggaattttgccaatgaaaaaagaccattgcactagtaccattataa |
1237579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 794265 - 794145
Alignment:
| Q |
29 |
catccaccaggaagagaaagagccaaagcggtggctcgaccggagataatgaaggaggctcttcttttgtataatgatgtcagagtaagccattgggttg |
128 |
Q |
| |
|
||||||| |||||||||||||||||||| | | |||||||| |||| || | || | || ||||||||||||||| |||| |||| ||| | | |||||| |
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| T |
794265 |
catccactaggaagagaaagagccaaagtg-tagctcgaccagagacaacggagaaagcccttcttttgtataataatgtaagaggaaggcgtggggttg |
794167 |
T |
|
| Q |
129 |
aatgatttcattcttcaggaca |
150 |
Q |
| |
|
|||||||||||| |||||||| |
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|
| T |
794166 |
aatgatttcatttatcaggaca |
794145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 175
Target Start/End: Complemental strand, 29088783 - 29088644
Alignment:
| Q |
36 |
caggaagagaaagagccaaagcggtggctcgaccggagataatgaaggaggctcttcttttgtataatgatgtcagagtaagccattgggttgaatgatt |
135 |
Q |
| |
|
||||||||||||||| ||||||| || ||| || |||||||| | || |||||| |||||||||||||| ||| ||| | | || |||||||||| |
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|
| T |
29088783 |
caggaagagaaagagtcaaagcgttgcttcggcctaagataatggaagaagctcttactttgtataatgatgcaagaacaagacgtgggattgaatgatt |
29088684 |
T |
|
| Q |
136 |
tcattcttcaggacactatattcatcacctccagaaacta |
175 |
Q |
| |
|
|||||||| |||||| ||| |||||||||| |||||| |
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| T |
29088683 |
tcattctttaggacaacgcatttatcacctccataaacta |
29088644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 289 - 506
Target Start/End: Complemental strand, 55039206 - 55038980
Alignment:
| Q |
289 |
gagtaaatattcatgaacacacactttcccctaccacccatatacacacacctagatggcatttgttattannnnnnnnattttattaatgcaagaaaaa |
388 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||| |
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|
| T |
55039206 |
gagtaaatattcatcaacacacattttcccctaccacccatatacacacacctaaatggcatttgttattattttttt-attttattaatgtaagaaaaa |
55039108 |
T |
|
| Q |
389 |
cacagcaacagtggcctttattatt----------tattttatcaatgcaagaaaaacaaacacgagtctttcccttcgctttcttctctctcatttctc |
478 |
Q |
| |
|
| ||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
55039107 |
cccagcaacagtggcatttattattatttattatttattttatcaattcaagaaaaacaaacacgagtctttcccttcgctctcttctctctcatttctc |
55039008 |
T |
|
| Q |
479 |
catctccacatatcactaacaccaccac |
506 |
Q |
| |
|
|||||||||| ||||||||||||||||| |
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|
| T |
55039007 |
catctccacagatcactaacaccaccac |
55038980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 293 - 506
Target Start/End: Original strand, 8004033 - 8004252
Alignment:
| Q |
293 |
aaatattcatgaacacacactttcccctaccacccatatacacacacctagatggcatttgttattannnnnnnnattttattaatgcaagaaaaacaca |
392 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| |
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|
| T |
8004033 |
aaatattcatgaacacacatttttccctaccatccatatacacacg--tagatggcatttgttattattttttt-attttattaatgcaagaaaa-caca |
8004128 |
T |
|
| Q |
393 |
gcaacagtggccttta----------ttatttattttatcaatgcaagaaaaacaaacacgagtctttcccttcgctttcttctctctcatttctccatc |
482 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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|
| T |
8004129 |
gcaacagtggcatttattattatttattatttattttatcaatgcaagaaaaacaaacacgagtctttcccttcgctctcttctctctcatttcttcatc |
8004228 |
T |
|
| Q |
483 |
tccacatatcactaacaccaccac |
506 |
Q |
| |
|
|||||| |||| |||||||||||| |
|
|
| T |
8004229 |
tccacaaatcattaacaccaccac |
8004252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 405 - 525
Target Start/End: Original strand, 5196940 - 5197060
Alignment:
| Q |
405 |
tttattatttattttatcaatgcaagaaaaacaaacacgagtctttcccttcgctttcttctctctcatttctccatctccacatatcactaacaccacc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
5196940 |
tttattatttattttatcaatgcaagaaaaacaaacacaagtctttcccttcgctctcttctctctcatttctccatctccacagatcactaacaccacc |
5197039 |
T |
|
| Q |
505 |
actcaccgccaccgccacccc |
525 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
5197040 |
actcaccaccaccgccacccc |
5197060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 10173635 - 10173513
Alignment:
| Q |
25 |
tagccatccaccaggaagagaaagagccaaagcggtggctcgaccggagataatgaaggaggctcttcttttgtataatgatgtcagagtaagccattgg |
124 |
Q |
| |
|
|||||||||| || | | ||||||||| ||||| ||||||||||| ||||||||| |||| |||||| |||||||||| |||| |||| || | | || |
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|
| T |
10173635 |
tagccatccatcaagtaaagaaagagcgaaagcagtggctcgacctgagataatgcaggaagctcttattttgtataaagatgcaagaggcaggcgtggg |
10173536 |
T |
|
| Q |
125 |
gttgaatgatttcattcttcagg |
147 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
10173535 |
gttgaatgatttcattcttcagg |
10173513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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