View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970-Insertion-12 (Length: 497)
Name: NF4970-Insertion-12
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970-Insertion-12 |
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| [»] scaffold0155 (3 HSPs) |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: scaffold0155 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 37448 - 37601
Alignment:
| Q |
8 |
attttactcctttattttgtcattcatttccttcaacaacatttgagactgagaagaggaagacagttaccataacaaaatcgggcaccaactttaatgt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37448 |
attttactcctttattttgtcattcatttccttcaacaacatttgagacagagaaggggaagacagttaccataacaaaatcgggcaccaactttaatgt |
37547 |
T |
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| Q |
108 |
tcattgagatttttnnnnnnngaaataatgaatgttaaacaaatatcctatacc |
161 |
Q |
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| T |
37548 |
tcattgagattttttaaaaaagaaataaagaatgtgaaacaaatatcctatacc |
37601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 225 - 340
Target Start/End: Original strand, 37666 - 37780
Alignment:
| Q |
225 |
acagtaacttgataaatataatttcggtattttgaaaactttttagtccaattctataaattttcttgagagagggtgtgccaactgtcaattcctcata |
324 |
Q |
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| T |
37666 |
acagtaacttgataaatgtaatttcggtattttgaaaactttttagtccaattctataaattttcttgagagagggtgtgccaactgtcaatt-ctcata |
37764 |
T |
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| Q |
325 |
aagtgtatcgttggat |
340 |
Q |
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|||||||||||||||| |
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| T |
37765 |
aagtgtatcgttggat |
37780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 396 - 497
Target Start/End: Original strand, 37836 - 37937
Alignment:
| Q |
396 |
gatgtcataatgtttgtttgcattttgatcacactgtttgttgacatggataaaaagatgaagatcatgaagaccttaggtgttaattttttgttctctt |
495 |
Q |
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| T |
37836 |
gatgtcataatgtttgtttgcattttgatcacactatttgttgacatggataaaaagatgaagatcatgaagaccataagtgttaattttttgttctctt |
37935 |
T |
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| Q |
496 |
ta |
497 |
Q |
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|| |
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| T |
37936 |
ta |
37937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 5e-48; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 396 - 497
Target Start/End: Original strand, 2662596 - 2662697
Alignment:
| Q |
396 |
gatgtcataatgtttgtttgcattttgatcacactgtttgttgacatggataaaaagatgaagatcatgaagaccttaggtgttaattttttgttctctt |
495 |
Q |
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| T |
2662596 |
gatgtcataatgtttgtttgcattttgatcacactgtttgttgacatggataaaaagatgaagatcatgaagaccataggtgttaattttttgttctctt |
2662695 |
T |
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| Q |
496 |
ta |
497 |
Q |
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|| |
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| T |
2662696 |
ta |
2662697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 229 - 340
Target Start/End: Original strand, 2662428 - 2662540
Alignment:
| Q |
229 |
taacttgataaatataatttcggtattttgaaaactttttagtccaa-ttctataaattttcttgagagagggtgtgccaactgtcaattcctcataaag |
327 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2662428 |
taacttgataaatgtaatttcggtattttgaaaactttttagtccaaattctataaattttcttgagatagggtgtgccaactgtcaattcctcataaag |
2662527 |
T |
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| Q |
328 |
tgtatcgttggat |
340 |
Q |
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||||||||||||| |
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| T |
2662528 |
tgtatcgttggat |
2662540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 2662265 - 2662307
Alignment:
| Q |
8 |
attttactcctttattttgtcattcatttccttcaacaacatt |
50 |
Q |
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| T |
2662265 |
attttactcctttattttgtcattcatttccttcaacaacatt |
2662307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 2662339 - 2662371
Alignment:
| Q |
129 |
gaaataatgaatgttaaacaaatatcctatacc |
161 |
Q |
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| T |
2662339 |
gaaataatgaatgtgaaacaaatatcctatacc |
2662371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 225 - 343
Target Start/End: Complemental strand, 22361679 - 22361561
Alignment:
| Q |
225 |
acagtaacttgataaatataatttcggtattttgaaaactttttagtccaattctataaattttcttgagagagggtgtgccaactgtcaattcctcata |
324 |
Q |
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||||||||||||||||| ||||| | |||||| |||||||||||| |||||||||||| | ||||||| | |||||||| |||||||||| |||| ||| |
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| T |
22361679 |
acagtaacttgataaatgtaattccagtatttggaaaactttttactccaattctatataagttcttgacatagggtgtgtcaactgtcaagtccttata |
22361580 |
T |
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| Q |
325 |
aagtgtatcgttggatgta |
343 |
Q |
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|||||| ||| |||||||| |
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| T |
22361579 |
aagtgtgtcgctggatgta |
22361561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 22361900 - 22361744
Alignment:
| Q |
9 |
ttttactcctttatt--ttgtcattcatttccttcaacaacatttgagactgagaagaggaagacagttaccataacaaaatcgggcaccaactttaatg |
106 |
Q |
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|||| |||||||||| || ||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| ||| ||| |
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| T |
22361900 |
tttttctcctttattggttttcattcattaaattcaacaacatttgagatagagaagaggaagacagttaccataaaaaaatggggcaccaattttcatg |
22361801 |
T |
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| Q |
107 |
ttcattgaga-tttttnnnnnnngaaata-atgaatgttaaacaaatatcctatacc |
161 |
Q |
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|||||||| | ||||| |||||| |||||||| |||||||||||||||||| |
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| T |
22361800 |
ttcattgaaatttttttaaaaaagaaatacatgaatgtgaaacaaatatcctatacc |
22361744 |
T |
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