View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4970-Insertion-13 (Length: 439)

Name: NF4970-Insertion-13
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4970-Insertion-13
NF4970-Insertion-13
[»] chr4 (7 HSPs)
chr4 (7-280)||(30719959-30720247)
chr4 (7-280)||(30892195-30892483)
chr4 (7-280)||(30881112-30881400)
chr4 (151-279)||(16867927-16868058)
chr4 (143-280)||(44731545-44731685)
chr4 (7-79)||(16867782-16867854)
chr4 (7-76)||(44731395-44731464)
[»] chr8 (1 HSPs)
chr8 (318-439)||(15998089-15998210)
[»] chr1 (1 HSPs)
chr1 (318-435)||(6111119-6111235)
[»] chr5 (2 HSPs)
chr5 (125-279)||(8898731-8898888)
chr5 (7-79)||(8898943-8899015)
[»] chr2 (2 HSPs)
chr2 (19-79)||(31727101-31727161)
chr2 (149-226)||(31726704-31726781)
[»] chr3 (1 HSPs)
chr3 (153-215)||(54277046-54277108)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 7 - 280
Target Start/End: Original strand, 30719959 - 30720247
Alignment:
Q  7 acttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaacag-------------------agttc 87  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||                   ||||     
T  30719959 acttcccagtactcaacttatggattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaaaaggtaaattaaaattaactagagttt 30720058  T
Q  88 aatgacaattcaatatttgatcacatgcatagtatgtaattgaatgcattacatgttagatagacacttaccacattgaccttggttcttcactggtgtt 187  Q
    ||||||||||||||||||||||||||    ||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  30720059 aatgacaattcaatatttgatcacat----agtttgtaattgaatgcattacataatagatagacacttaccacattgaccttggttcttcactggtgtt 30720154  T
Q  188 actgctcctttctttcaccaatccactgttgatggaacacttgcattttcatacttaaaactacttgtctttgtgattgaggagcacatatga 280  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30720155 actgctcctttctttctccaatccactgttgatggaacacttgcattttcatacttaaaagtacttgtctttgtgattgaggagcacatatga 30720247  T

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Target: chr4; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 30892483 - 30892195
Alignment:
Q  7 acttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaacag-------------------agttc 87  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||                   ||||     
T  30892483 acttcccagtactcaacttatggattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaaaaggtaaattaaaattaactagagttt 30892384  T
Q  88 aatgacaattcaatatttgatcacatgcatagtatgtaattgaatgcattacatgttagatagacacttaccacattgaccttggttcttcactggtgtt 187  Q
    ||||||||||||||||||||||||||    ||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  30892383 aatgacaattcaatatttgatcacat----agtttgtaattgaatgcattacataatagatagacacttaccacattgaccttggttcttcactggtgtt 30892288  T
Q  188 actgctcctttctttcaccaatccactgttgatggaacacttgcattttcatacttaaaactacttgtctttgtgattgaggagcacatatga 280  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30892287 actgctcctttctttctccaatccactgttgatggaacacttgcattttcatacttaaaagtacttgtctttgtgattgaggagcacatatga 30892195  T

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Target: chr4; HSP #3
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 30881400 - 30881112
Alignment:
Q  7 acttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaacag-------------------agttc 87  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||                   | ||     
T  30881400 acttcccagtactcaacttatggattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaaaaggtaaattaaaattaactagaattt 30881301  T
Q  88 aatgacaattcaatatttgatcacatgcatagtatgtaattgaatgcattacatgttagatagacacttaccacattgaccttggttcttcactggtgtt 187  Q
    ||||||||||||||||||||||||||    ||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  30881300 aatgacaattcaatatttgatcacat----agtttgtaattgaatgcattacataatagatagacacttaccacattgaccttggttcttcactggtgtt 30881205  T
Q  188 actgctcctttctttcaccaatccactgttgatggaacacttgcattttcatacttaaaactacttgtctttgtgattgaggagcacatatga 280  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30881204 actgctcctttctttctccaatccactgttgatggaacacttgcattttcatacttaaaagtacttgtctttgtgattgaggagcacatatga 30881112  T

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Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 151 - 279
Target Start/End: Original strand, 16867927 - 16868058
Alignment:
Q  151 acacttaccacattgaccttggttcttcactggtgttactgctcctttctttcaccaatccactgttgatggaa---cacttgcattttcatacttaaaa 247  Q
    |||| |||||||||| |||||||||||||| ||||| |||||||||||||| | ||||||||| |  |||||||   |||||||||||||||||||||||    
T  16867927 acacgtaccacattgtccttggttcttcacaggtgtaactgctcctttcttcctccaatccaccgaggatggaattgcacttgcattttcatacttaaaa 16868026  T
Q  248 ctacttgtctttgtgattgaggagcacatatg 279  Q
     |||||||| |||||||||| |||||||||||    
T  16868027 gtacttgtccttgtgattgaagagcacatatg 16868058  T

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Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 143 - 280
Target Start/End: Original strand, 44731545 - 44731685
Alignment:
Q  143 ttagatagacacttaccacattgaccttggttcttcactggtgttactgctcctttctttcaccaatccactgttgatggaa---cacttgcattttcat 239  Q
    |||||| || |||||||||||||||||||||||||||| ||||| |||||||||||||| | |||||||||||| || || |   ||||| |||||||||    
T  44731545 ttagattgatacttaccacattgaccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtggacgggattgcacttacattttcat 44731644  T
Q  240 acttaaaactacttgtctttgtgattgaggagcacatatga 280  Q
    |||||||| || |||| || | |||||||||||||||||||    
T  44731645 acttaaaagtagttgttttcgcgattgaggagcacatatga 44731685  T

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Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 16867782 - 16867854
Alignment:
Q  7 acttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa 79  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  16867782 actttccagtactcaacttatgaattccttcggttgctgcaacagcagaaaacgcccaacaacatcctacaaa 16867854  T

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Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 44731395 - 44731464
Alignment:
Q  7 acttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctac 76  Q
    |||| |||||||||||||||  ||||||||||||||| |||||||| |||||||||||||||||||||||    
T  44731395 actttccagtactcaacttagtaattccttcggttgctgcaacagctgaaaatgcccaacaacatcctac 44731464  T

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Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 318 - 439
Target Start/End: Original strand, 15998089 - 15998210
Alignment:
Q  318 aaaataatgataaaatacaagcacggtctagaaactaccacatattttcttcattcattttcccttcccctttctacttcactctcgttccttctctatg 417  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||  ||||| |||||||||| ||    
T  15998089 aaaataatgataaaatacaagcacggtctagaagctaccacatatttccttcattcattttcccttcccctttctactttgctctcattccttctctctg 15998188  T
Q  418 ttcctcacattttccaaattta 439  Q
    ||||||||||||||||||||||    
T  15998189 ttcctcacattttccaaattta 15998210  T

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Target: chr1 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 318 - 435
Target Start/End: Complemental strand, 6111235 - 6111119
Alignment:
Q  318 aaaataatgataaaatacaagcacggtctagaaactaccacatattttcttcattcattttcccttcccctttctacttcactctcgttccttctctatg 417  Q
    ||||||||||||||| |||| |||||||||||| ||| ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| ||    
T  6111235 aaaataatgataaaacacaaacacggtctagaagctagcacatatttccttcattcattttccctt-cccattctacttcactctcgttccttctctctg 6111137  T
Q  418 ttcctcacattttccaaa 435  Q
    ||||||| |||| |||||    
T  6111136 ttcctcatatttcccaaa 6111119  T

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Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 125 - 279
Target Start/End: Complemental strand, 8898888 - 8898731
Alignment:
Q  125 aattgaatgcattacatgttagatagacacttaccacattgaccttggttcttcactggtgttactgctcctttctttcaccaatccactgttgatggaa 224  Q
    |||| |||||||||  | ||||||||| || |||||||||| |||||||||||||| ||||| |||||||||||||| | |||||||||||| ||||| |    
T  8898888 aattaaatgcattagtttttagatagaaacgtaccacattggccttggttcttcacaggtgtcactgctcctttcttcctccaatccactgtagatggga 8898789  T
Q  225 ---cacttgcattttcatacttaaaactacttgtctttgtgattgaggagcacatatg 279  Q
       ||||| ||||||||||||||||| || ||||| || ||||||| |||||||||||    
T  8898788 ttgcacttacattttcatacttaaaagtagttgtccttatgattgatgagcacatatg 8898731  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 8899015 - 8898943
Alignment:
Q  7 acttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa 79  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  8899015 actttccagtactcaacttatgaattccttcggttgctgcaacagcagaaaacgcccaacaacatcctacaaa 8898943  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 31727161 - 31727101
Alignment:
Q  19 tcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa 79  Q
    ||||||||||||||||||||||||  ||||| |||||||| ||||||||||||||||||||    
T  31727161 tcaacttatgaattccttcggttgatgcaaccgcagaaaacgcccaacaacatcctacaaa 31727101  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 31726781 - 31726704
Alignment:
Q  149 agacacttaccacattgaccttggttcttcactggtgttactgctcctttctttcaccaatccactgttgatggaaca 226  Q
    ||||||||||||||||| ||||| || ||||| ||||| |||||||||| ||  | |||||||||||  |||||||||    
T  31726781 agacacttaccacattggccttgatttttcacaggtgtcactgctccttcctgcctccaatccactgcagatggaaca 31726704  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 54277108 - 54277046
Alignment:
Q  153 acttaccacattgaccttggttcttcactggtgttactgctcctttctttcaccaatccactg 215  Q
    ||||||||||||||||||| ||||| || || ||||| || |||||||||| |||||| ||||    
T  54277108 acttaccacattgaccttgattcttgaccggggttacagcacctttctttctccaatcaactg 54277046  T

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