View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4970-Insertion-15 (Length: 398)
Name: NF4970-Insertion-15
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970-Insertion-15 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 398
Target Start/End: Complemental strand, 21056479 - 21056089
Alignment:
| Q |
8 |
tccagttcctgcaaaatttatttccacggattctgcattttctatccctcaattttattatagtcaaagcagaattctccagataatttcaccaaatcaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21056479 |
tccagttcctgcaaaatttatttccacggattctgcattttctatccctcaattttattatagtcaaagcagaattctcgagataatttcaccaaatcaa |
21056380 |
T |
|
| Q |
108 |
tagtgcacaatccttgtgcaacacatgagaatttgacttctatttcattattatatannnnnnnnnatcaatttttgt-cagtataatagcacataaata |
206 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
21056379 |
tagtgcacaatccttgtgaaccacatgagaatttgacttctatttcattattatatatttttttt-atcaatttttgtgcagtataatagcacataaata |
21056281 |
T |
|
| Q |
207 |
cctatcatagtaatttcccaaacgaatcaaatacatgcaatgataagaaagtttccagacacaatgagcaacaccttctcaatgtagccggacatcaact |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21056280 |
cctatcatagtaatttcccaaacgaatcaaatacatgcaatgataagaaagtttgcagacacaatgagcaacaccttctcaatgtagccggacatcaact |
21056181 |
T |
|
| Q |
307 |
ttttctatatctaatctactttactataagcatgccattgtcaagttaaactcaaacactccaatgctgcttgcagtaagtaaacttatccg |
398 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
21056180 |
ttttctatatctaatctactttacaataagcatgccattgtcaagttaaactcaaacactccaatgcaacttccagtaagtaaacttatccg |
21056089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 190 - 367
Target Start/End: Original strand, 26365654 - 26365831
Alignment:
| Q |
190 |
ataatagcacataaatacctatcatagtaatttcccaaac-gaatcaaatacatgcaatgataagaaagtttccagacacaatgagcaacaccttctcaa |
288 |
Q |
| |
|
|||||| |||||| || | ||||||| |||||||||||| ||||||||| ||||||||| || | | |||| | |||||||||||||| |||||||||| |
|
|
| T |
26365654 |
ataataacacatagatgcatatcatattaatttcccaaatagaatcaaatgcatgcaatgcta-gcatgtttgctgacacaatgagcaaaaccttctcaa |
26365752 |
T |
|
| Q |
289 |
tgtagccggacatcaactttttctatatctaatctactttactataagcatgccattgtcaagttaaactcaaacactc |
367 |
Q |
| |
|
| |||| ||| ||||||||||||||||| |||| | ||| ||||| |||||||||| |||| |||||| ||||||||| |
|
|
| T |
26365753 |
tctagctggatatcaactttttctatattcaatcaaatttcctataggcatgccattttcaaattaaacccaaacactc |
26365831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 272 - 367
Target Start/End: Original strand, 26363244 - 26363339
Alignment:
| Q |
272 |
gagcaacaccttctcaatgtagccggacatcaactttttctatatctaatctactttactataagcatgccattgtcaagttaaactcaaacactc |
367 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||||||||||| |||| |||| | ||| |||||||||||||||| ||||||||||| || |||||| |
|
|
| T |
26363244 |
gagcaaaaccttcacaatgtagctggacatcaactttttcaatattaaatcaaatttcctataagcatgccattctcaagttaaacacagacactc |
26363339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 26365516 - 26365585
Alignment:
| Q |
38 |
ttctgcattttctatccct-caattttattatagtcaaagcagaattctccagataatttcaccaaatca |
106 |
Q |
| |
|
|||||||||||||||||| | || ||||| || |||||||| |||| |||||||||| ||||||||||| |
|
|
| T |
26365516 |
ttctgcattttctatcccaactatcttattgtattcaaagcaaaattttccagataatatcaccaaatca |
26365585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University