View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970-Insertion-16 (Length: 366)
Name: NF4970-Insertion-16
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970-Insertion-16 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 347
Target Start/End: Original strand, 5213808 - 5214147
Alignment:
| Q |
8 |
atatctacatatcaagtacaataatgttggacgtaagagggtgcgttaagagtcagacgatgaccagtgataacttgaaacatatgtttataaatgggaa |
107 |
Q |
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| T |
5213808 |
atatctacgtatcaagtacaataatgttggacgtaagagggtgcgttaagagacagacgatgatcaacgataacttagaacatatgtttataaatgagaa |
5213907 |
T |
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| Q |
108 |
caattatcacttcacaaatcgatgtaatgaggttgtgttagacccaacaataatatttaagaaaacccaatcccgtttgaagcagacactgttagtttct |
207 |
Q |
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| T |
5213908 |
caattatcacttcacaaatcaatgttatgagattgtgttagacccaacaataatttttaacaaaacccaatcctgtttgaagcagacactattagtttct |
5214007 |
T |
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| Q |
208 |
cattcgaaacaatattccctgcaacccaacatctttggggctttccatcaaacaccatggatacaaataactaatcatagtggcgaaactcaaattttta |
307 |
Q |
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| T |
5214008 |
cattcgaaacaatattccctgcaacccaacatctttggggctttccatcaaacaccatggatacaaataactaatcatagtggcgaaactcaaattttta |
5214107 |
T |
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| Q |
308 |
gaaagaacaannnnnnnnataattgtttcgtatttagagc |
347 |
Q |
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| T |
5214108 |
gaaagaacaattttttttataattgttccgtatttagagc |
5214147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 29005869 - 29005935
Alignment:
| Q |
89 |
atatgtttataaatgggaacaattatcacttcacaaatcgatgtaatgaggttgtgttagacccaac |
155 |
Q |
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| T |
29005869 |
atatgtttataagtgggaacaatcctcacttcataagccgaatttatgaggttgtgttagacccaac |
29005935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 16962329 - 16962289
Alignment:
| Q |
85 |
aaacatatgtttataaatgggaacaattatcacttcacaaa |
125 |
Q |
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| T |
16962329 |
aaacatatgtttataagtgggaacaattctcacctcacaaa |
16962289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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