View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4970-Insertion-2 (Length: 994)
Name: NF4970-Insertion-2
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970-Insertion-2 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 548; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 223 - 994
Target Start/End: Complemental strand, 24677061 - 24676277
Alignment:
| Q |
223 |
tttaagttattaaaagtttatgccgttaccctttcagtcaaccttcgttacaaaaacgttgagatgttcgttaactgagtgacgtggcttaagacgctgc |
322 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
24677061 |
tttaagttattaaaagcttatgccgttaccctttcagtcaaccttcgttacaaaaacgctgagatatccgttaactgagtgacgtggcttaagacgctgc |
24676962 |
T |
|
| Q |
323 |
attttggtcattccaatgtgtttcaatttgaagaatttgggcggtttgaagccatgcttttcttcaaaaagcttcaaattggtcgttaacgaggttaggg |
422 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||| |||||||||| |
|
|
| T |
24676961 |
attttggtcattccaatgtgtttcaatctgaagaatttgggcgatttgaagccatgcttttcttcaaaaagcttcaaattgattgttaatgaggttaggg |
24676862 |
T |
|
| Q |
423 |
ttttcaatttggggacgaatgggtgaagattgaagaggaatgatgaggaatatgatggggtagtattgaaacacgctggatagaccataacgcgacgttt |
522 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
24676861 |
ttttcaatttggggacgaatgggtgaa-attgaagaggaatgatgaggaatatgatggggcagtattgaaacacgctggataggccataacgcgacattt |
24676763 |
T |
|
| Q |
523 |
tatgccataccacgtacttaac----aactcaactttattgtaatggaggttgactaaaatgataacgatataagcttttaataacttaaatgatcaatt |
618 |
Q |
| |
|
||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24676762 |
tatgccacatcacgtacttaacggaaaactcaactttattgtaatggaggttgactaaaatgataacgacgtaagcttttaataacttaaatgatcaatt |
24676663 |
T |
|
| Q |
619 |
taaaactttaaaaacttttagactgatccggtacaaacgtgaaacttaaagacctcatgaggtatttgaccattatcatttgcattactttttaaagcaa |
718 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24676662 |
taaaactttaaaaacttatagactgatccggtacaaacgtgaaacttaaagacctcatgaggtatttgaccattatcatttgtattactttttaaagcag |
24676563 |
T |
|
| Q |
719 |
aggtagt-----tnnnnnnnnnnntttcagnnnnnnngaccaatgtgactcgaaatggttactaaaaataaggcttaaatgtagtttttagcccccaagg |
813 |
Q |
| |
|
||||||| | |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24676562 |
aggtagttaaaatctttttttttttttcagtttttttgaccaatgtgactcgaaatgattactaaaaataaggcttaaatgtagttttcagcccccaagg |
24676463 |
T |
|
| Q |
814 |
ataaactgtaatgtttgccccatatctctaattgcacgattttgctaattcagttcagaaaatttgatc-acacatgattttaac-atttaatttgactt |
911 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |
|
|
| T |
24676462 |
ataaactgtaatgtttgccccatatctctaattgcacgatttagctaattcagttcagaaaatttgatcaacacatgattttaacaatttaattcgactt |
24676363 |
T |
|
| Q |
912 |
gac-ataaatttgaagagagtgcgagtgacatattgtctagaggtattagctttgactgtaatcca--cataattgattggacatc |
994 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
24676362 |
gacaataaatttgaagagagtgcgagtgacatatggtctagaggtattagctttgactgtaatccaacaataattgattcgacatc |
24676277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 24677254 - 24677048
Alignment:
| Q |
8 |
gttttgatattgaattttcattttcattgtgttaaagatttctaaatattagtcagacttgtacaagacattaattttaattca------gtgtaaaact |
101 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
24677254 |
gttttgatatggaatttgaattttcattgtgttaaagatttctaaatattagtcagacttgtataagacattaattttaattcacagtcagtgtaaaact |
24677155 |
T |
|
| Q |
102 |
ttttagtatatacacagctaacaaattataaattatcattggccaaatgcatcccgaaatcctttaagtttcgcgtttgtact-gatcagtcctataagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
24677154 |
ttttagtatatacacagctaacaaattataaattatcattggccaaatgcatcccaaaatcctttaagtttcgcgtttgtactggatcagtcctttaagt |
24677055 |
T |
|
| Q |
201 |
ttttaaa |
207 |
Q |
| |
|
| ||||| |
|
|
| T |
24677054 |
tattaaa |
24677048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 353 - 503
Target Start/End: Original strand, 22572875 - 22573025
Alignment:
| Q |
353 |
aagaatttgggcggtttgaagccatgcttttcttcaaaaagcttcaaattggtcgttaacgaggttagggttttcaatttggggacgaatgggtgaagat |
452 |
Q |
| |
|
||||||| || || |||||||||||| |||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22572875 |
aagaattgggacgatttgaagccatgattttcttcaaaaagcttcaaattggttgttaatggggttagggttttcaatttggggaagaatgggtgaagat |
22572974 |
T |
|
| Q |
453 |
tgaagaggaatgatgaggaatatgatggggtagtattgaaacacgctggat |
503 |
Q |
| |
|
|||||| |||||||| |||| |||||||| |||||||||||||||||||| |
|
|
| T |
22572975 |
tgaagattaatgatgacgaatctgatggggcagtattgaaacacgctggat |
22573025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 163 - 285
Target Start/End: Original strand, 24676612 - 24676734
Alignment:
| Q |
163 |
ctttaagtttcgcgtttgtactg-atcagtcctataagtttttaaagttttagattgatcatttaagttattaaaagtttatgccgttaccctttcagtc |
261 |
Q |
| |
|
||||||||||| ||||||||| | ||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||| | ||||| | ||| |||| |
|
|
| T |
24676612 |
ctttaagtttcacgtttgtaccggatcagtc-tataagtttttaaagttttaaattgatcatttaagttattaaaagcttacgtcgttatcattttagtc |
24676710 |
T |
|
| Q |
262 |
aaccttcgttacaaaaacgttgag |
285 |
Q |
| |
|
||||| | |||||| || |||||| |
|
|
| T |
24676711 |
aacctccattacaataaagttgag |
24676734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 161 - 670
Target Start/End: Original strand, 32701999 - 32702514
Alignment:
| Q |
161 |
tcctttaagtttcgcgtttgtactg-atcagtcctataagtttttaaagttttagattgatcatttaagttattaaaagtttatgccgttaccctttcag |
259 |
Q |
| |
|
||||||||||||||| ||||||| | ||||||||| |||||||||||||||| | |||| || ||||||||| |||||| ||||| |||||||||||| |
|
|
| T |
32701999 |
tcctttaagtttcgcatttgtaccggatcagtcctttaagtttttaaagtttcacattggtcctttaagttactaaaagcttatgttgttaccctttcaa |
32702098 |
T |
|
| Q |
260 |
tcaaccttcgttacaaaaacgttgagatgttcgttaactgagtgacgtggcttaagacgctgcattttggtcattccaatgtgtttcaatttgaagaatt |
359 |
Q |
| |
|
||||||| |||||||||||| |||||||| |||||| ||||||| ||||| |||||||| |||||||||| ||||||| ||||| |||||| ||||||| |
|
|
| T |
32702099 |
tcaacctccgttacaaaaacactgagatgtccgttaagtgagtgatgtggcataagacgccgcattttggttattccaacgtgttccaatttaaagaatt |
32702198 |
T |
|
| Q |
360 |
tgggcggtttgaagccatgcttttcttcaaaaagcttcaaattggtcgttaacgaggttagggttttcaatttggggacgaatgggtgaagattgaagag |
459 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||| || |||||||| ||||| |||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32702199 |
tgggcgatttgaagccaagcttttcttcaaaaagtttgaaattggttgttaatgaggttagggccttcaatttggggacgaatgggtgaaaattgaagag |
32702298 |
T |
|
| Q |
460 |
gaatgatgaggaatatgatggggtagtattgaaacacgctggatagaccataacgcgacgttttatgccataccacgtactta----acaactcaacttt |
555 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| |||||| ||||||| ||| |||| | |||||||||||| | |||||||| |||||||| |||| |
|
|
| T |
32702299 |
gaatgatgaagaatatgatggggcagtattggaacacgttggataggccagaacgtggcgttttatgccacatgccgtacttaacggacaactcagcttt |
32702398 |
T |
|
| Q |
556 |
attgtaatggaggttgactaaaatgataacgatataagcttttaataacttaaatgatcaatttaaaactttaaaaactttta-gactgatccggtacaa |
654 |
Q |
| |
|
| ||||| |||||||| ||||| | |||||| ||||||||||||||||||||| || |||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
32702399 |
aatgtaacagaggttgattaaaagggtaacgacataagcttttaataacttaaaggaccaatttaaaactttaaaaacttaaaggactgatccggtacaa |
32702498 |
T |
|
| Q |
655 |
acgtgaaacttaaaga |
670 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
32702499 |
acgtaaaacttaaaga |
32702514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 163 - 266
Target Start/End: Complemental strand, 32702513 - 32702409
Alignment:
| Q |
163 |
ctttaagtttcgcgtttgtactg-atcagtcctataagtttttaaagttttagattgatcatttaagttattaaaagtttatgccgttaccctttcagtc |
261 |
Q |
| |
|
|||||||||| ||||||||| | ||||||||| |||||||||||||||||| |||| || |||||||||||||||| ||||| ||||||||||| | || |
|
|
| T |
32702513 |
ctttaagttttacgtttgtaccggatcagtcctttaagtttttaaagttttaaattggtcctttaagttattaaaagcttatgtcgttacccttttaatc |
32702414 |
T |
|
| Q |
262 |
aacct |
266 |
Q |
| |
|
||||| |
|
|
| T |
32702413 |
aacct |
32702409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 557 - 669
Target Start/End: Complemental strand, 32702114 - 32702001
Alignment:
| Q |
557 |
ttgtaatggaggttgactaaaatgataacgatataagcttttaataacttaaatgatcaatttaaaactttaaaaactttta-gactgatccggtacaaa |
655 |
Q |
| |
|
|||||| ||||||||| | ||| | |||| | ||||||||||| ||||||||| || |||| | ||||||||||||||| | ||||||||||||||||| |
|
|
| T |
32702114 |
ttgtaacggaggttgattgaaagggtaacaacataagcttttagtaacttaaaggaccaatgtgaaactttaaaaacttaaaggactgatccggtacaaa |
32702015 |
T |
|
| Q |
656 |
cgtgaaacttaaag |
669 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
32702014 |
tgcgaaacttaaag |
32702001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 3e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 161 - 666
Target Start/End: Original strand, 13488871 - 13489380
Alignment:
| Q |
161 |
tcctttaagtttcgcgtttgta-ctgatcagtcctataagtttttaaagttttagattgatcatttaagttattaaaagtttatgccgttaccctttcag |
259 |
Q |
| |
|
||||||||||||| |||||||| | ||| ||| | ||| |||||||||||| | |||| || ||||||||||| ||| ||||| ||||| |||||||| |
|
|
| T |
13488871 |
tcctttaagtttcacgtttgtaacggataagttttttaattttttaaagtttcatattggtcctttaagttattgaaaaattatgtcgttaacctttcag |
13488970 |
T |
|
| Q |
260 |
tcaaccttcgttacaaaaacgttgagatgttcgttaactgagtgacgtggcttaagacgctgcattttggtcattccaatgtgtttcaatttgaagaatt |
359 |
Q |
| |
|
||||||| |||||||||||||||||||||| | ||| ||| |||| || |||| ||| || |||| ||||||| ||||| ||||||||||||| |
|
|
| T |
13488971 |
tcaacctccgttacaaaaacgttgagatgtccatta--tgattgacatgatataaggcgccgcgttttttccattccatcgtgttccaatttgaagaatc |
13489068 |
T |
|
| Q |
360 |
tgggcggtttgaagccatgcttttcttcaaaaagcttcaaattggtcgttaacgaggttagggttttcaatttggggacgaatgggtgaagattgaagag |
459 |
Q |
| |
|
| ||| |||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13489069 |
taggcaatttgaagccatgcttttcttaaaaaagcttcaaattggttgttaatgaggttagggttttcaatttggggaagaatgggtgaagattgaagaa |
13489168 |
T |
|
| Q |
460 |
gaatgatgaggaatatgatggggtagtattgaaacacgctggatagaccataacgcgacgttttatgccataccacgtactta----acaactcaacttt |
555 |
Q |
| |
|
|| ||||||||||| |||||||||||||||| ||||| ||||||| ||| ||| | |||||||||||| | ||| || ||| |||| | |||||| |
|
|
| T |
13489169 |
gagtgatgaggaatgtgatggggtagtattggaacacattggataggccagaacatggcgttttatgccacatcacatatttaacggacaattaaacttt |
13489268 |
T |
|
| Q |
556 |
attgtaatggaggttgactaaaatgataacgatataagcttttaataacttaaatgatcaatttaaaactttaaaaactttta-gactgatccggtacaa |
654 |
Q |
| |
|
||||||| ||||||||||| ||| | |||||| |||||||||||||| ||||| | |||| |||||||||||||| || | |||||||||||||||| |
|
|
| T |
13489269 |
attgtaacggaggttgactgaaagggtaacgacgtaagcttttaataatttaaagaaccaatctaaaactttaaaaatttaaaggactgatccggtacaa |
13489368 |
T |
|
| Q |
655 |
acgtgaaactta |
666 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
13489369 |
acgtaaaactta |
13489380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 13489360 - 13489270
Alignment:
| Q |
185 |
gatcagtcctataagtttttaaagttttagattgatcatttaagttattaaaagtttatgccgttaccctttcagtcaaccttcgttacaa |
275 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||| | ||||| |||||||||| ||| | ||||||||||||||||||||| |||||||| |
|
|
| T |
13489360 |
gatcagtcctttaaatttttaaagttttagattggttctttaaattattaaaagcttacgtcgttaccctttcagtcaacctccgttacaa |
13489270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 547 - 669
Target Start/End: Complemental strand, 13488996 - 13488873
Alignment:
| Q |
547 |
ctcaactttattgtaatggaggttgactaaaatgataacgatataagcttttaataacttaaatgatcaatttaaaactttaaaaacttttaga-ctgat |
645 |
Q |
| |
|
|||||| || |||||| ||||||||||| ||| | |||||| |||| ||| ||||||||||| || |||| | |||||||||||| || | | || || |
|
|
| T |
13488996 |
ctcaacgtttttgtaacggaggttgactgaaaggttaacgacataatttttcaataacttaaaggaccaatatgaaactttaaaaaattaaaaaacttat |
13488897 |
T |
|
| Q |
646 |
ccggtacaaacgtgaaacttaaag |
669 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
13488896 |
ccgttacaaacgtgaaacttaaag |
13488873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 552 - 635
Target Start/End: Original strand, 39853818 - 39853901
Alignment:
| Q |
552 |
ctttattgtaatggaggttgactaaaatgataacgatataagcttttaataacttaaatgatcaatttaaaactttaaaaactt |
635 |
Q |
| |
|
||||||||||| ||||||||| ||| |||||| || |||||||||||||||||||| ||||||| | ||||||||||||||| |
|
|
| T |
39853818 |
ctttattgtaacggaggttgatcgaaaggataacaatgtaagcttttaataacttaaaggatcaatctgaaactttaaaaactt |
39853901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 266
Target Start/End: Original strand, 39853604 - 39853680
Alignment:
| Q |
190 |
gtcctataagtttttaaagttttagattgatcatttaagttattaaaagtttatgccgttaccctttcagtcaacct |
266 |
Q |
| |
|
||||| ||| ||| |||| |||||||||||| ||||| |||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
39853604 |
gtcctttaaatttctaaaattttagattgattctttaaattattaaaagtttacgccgttaccctttcaatcaacct |
39853680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 296
Target Start/End: Complemental strand, 39853902 - 39853802
Alignment:
| Q |
196 |
taagtttttaaagttttagattgatcatttaagttattaaaagtttatgccgttaccctttcagtcaaccttcgttacaaaaacgttgagatgttcgtta |
295 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||| ||| |||| |||||| ||||||| |||||||| || | ||| |||| ||||| |
|
|
| T |
39853902 |
taagtttttaaagtttcagattgatcctttaagttattaaaagcttacattgttatcctttcgatcaacctccgttacaataaagctgatatgtccgtta |
39853803 |
T |
|
| Q |
296 |
a |
296 |
Q |
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