View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970-Insertion-3 (Length: 974)
Name: NF4970-Insertion-3
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 6 - 372
Target Start/End: Original strand, 40495506 - 40495872
Alignment:
| Q |
6 |
catcttctgtggcctttttcttgagaagttcaagcttgttctgattaaaccagaatgacttgtatataatctcttcttcctcatgaattaatttgtttgt |
105 |
Q |
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| T |
40495506 |
catcttctgtggcctttttcttgagaagttcaagcttgttctgattaaaccagaatgacttgtatataatctcttcttcctcatgaattaatttgtttgt |
40495605 |
T |
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| Q |
106 |
atctgacaaatcttcaagttcatcgaattcgtgatgcgtgaactctatttgtggggggttgcgtgatttgagtattgttctatcaagaaatggtgggatt |
205 |
Q |
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| T |
40495606 |
atctgataaatcttcaagttcatcgaattcgtgatgcgtgaactctatttgtggggggttacgtgatttgagtattgttctatcaagaaatggtgggatt |
40495705 |
T |
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| Q |
206 |
tttaagtctagtcctcttgctgtgtcaccccaggagttcacaaattgcatagcacttataccgtcattcatacaatggttcacgtttacccccaaaacaa |
305 |
Q |
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| T |
40495706 |
tttaagtctagtcctcttgctgtgtcaccccaggagttcacaaattgcatagcacttataccgtcattcatacaatggttcacgtttacccccaaaacaa |
40495805 |
T |
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| Q |
306 |
accctccacatttatactttgtcacctgaaaaagagggttcagttccacattaaatatatgacattg |
372 |
Q |
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| T |
40495806 |
accctccacatttaaactttgtcacctgaaaaagagggttcagttccacattaaatatatgacattg |
40495872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 416 - 688
Target Start/End: Original strand, 40495878 - 40496154
Alignment:
| Q |
416 |
tcaagcacttatcaccgcataacatatcaataacttcttttnnnnnnnnntcaataattaattgcataactctattggtaatgacgtgttgcattgaata |
515 |
Q |
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| T |
40495878 |
tcaagcacttatcaccgcataacatatcaataacttattttaaaaaaaa-tcaataactaatagcatcact-----ggtaatgacgtgttgcattgaata |
40495971 |
T |
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| Q |
516 |
tcatgccactagattacttaaacaaacnnnnnnnnnnnnctaatagtgtttggatgacannnnnnnaagtaatgtaatattaaaggataattcaaaattt |
615 |
Q |
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| T |
40495972 |
tcatgcccctagattacttaaacaaa-taaaaaaaaaaactaatagtgtttggatgacatttttttaagtaatgtaatattaaaggataattcaaaattt |
40496070 |
T |
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| Q |
616 |
tctatgtaaattttattgtttggat-----------gaatttttaaaacaaagatattttatcaagtattcttttgaattatac |
688 |
Q |
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| T |
40496071 |
tctatgtaaattttattgtttggatgaattttttgagaatttttaaaacaaagatattttatcaagtattcttttgaattatac |
40496154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 767 - 916
Target Start/End: Original strand, 40496233 - 40496384
Alignment:
| Q |
767 |
gatccctatacgttttcaaaaattataaattgtcctataaatattcaaaaggtctgattcctataaac-tttcaaaaattgcaaatcgatccttannnnn |
865 |
Q |
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| T |
40496233 |
gatccctataagttttcaaaaattataaattgtcctataaatattcaaaaggtctgattcctataaacttttaaaaaattgcaaatcgatccttattttt |
40496332 |
T |
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| Q |
866 |
nnagaattacaatttta-tcctaaattttaaaattatgcataatagtcccta |
916 |
Q |
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| T |
40496333 |
ttagaattacaattttattccaaaattttaaaattatgcatattagtcccta |
40496384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 260
Target Start/End: Original strand, 45350922 - 45351015
Alignment:
| Q |
167 |
cgtgatttgagtattgttctatcaagaaatggtgggatttttaagtctagtcctcttgctgtgtcaccccaggagttcacaaattgcatagcac |
260 |
Q |
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| T |
45350922 |
cgtgatttgagtatggttctatcaagaaatggtggagtctttaagtctaaacctctagctgtttcagcccatgcattcacaaactccatagcac |
45351015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 641
Target Start/End: Original strand, 30553485 - 30553542
Alignment:
| Q |
584 |
gtaatgtaatattaaaggataattcaaaattttctatgtaaattttattgtttggatg |
641 |
Q |
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| T |
30553485 |
gtaatgtgattttagaggataattcaaccttttcaatgtaaattttattggttggatg |
30553542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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