View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4970-Insertion-6 (Length: 804)

Name: NF4970-Insertion-6
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4970-Insertion-6
NF4970-Insertion-6
[»] chr7 (6 HSPs)
chr7 (8-764)||(46121156-46121913)
chr7 (532-569)||(835093-835130)
chr7 (532-569)||(1200273-1200310)
chr7 (533-569)||(47879759-47879795)
chr7 (533-569)||(47914837-47914873)
chr7 (533-568)||(40098533-40098568)
[»] chr3 (2 HSPs)
chr3 (530-569)||(46174788-46174827)
chr3 (620-670)||(6976140-6976190)
[»] chr4 (2 HSPs)
chr4 (533-569)||(7007926-7007962)
chr4 (621-670)||(9163620-9163669)
[»] chr2 (1 HSPs)
chr2 (533-568)||(34027520-34027555)
[»] chr1 (2 HSPs)
chr1 (620-675)||(28337359-28337414)
chr1 (533-566)||(47781317-47781350)


Alignment Details
Target: chr7 (Bit Score: 658; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 8 - 764
Target Start/End: Original strand, 46121156 - 46121913
Alignment:
Q  8 atttgttcctatgaaacttttgtatcaaatagcgttggtgatgtttttatgcattcgttgatgcaaagatggtaggccctcacgcagctagcaaagcaac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46121156 atttgttcctatgaaacttttgtatcaaatagcgttggtgatgtttttatgcattcgttgatgcaaagatggtaggccctcacgcagctagcaaagcaac 46121255  T
Q  108 tcggatggaacaaccttgtttggtagctaaaggatgatgatattaaagataaggcagttgaatgtattttccaaactaagtcaggctaatgaatgtctag 207  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46121256 tcggatggaacaaccttgtttggtagctcaaggatgatgatattaaagataaggcagttgaatgcattttccaaactaagtcaggctaatgaatgtctag 46121355  T
Q  208 tatcagtgcaactgcaagtgggtttattatattctaaaaggcttgctcatcttctctatttgagcattgtgaagaaatctcacaatgacacatttttgtt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46121356 tatcagtgcaactgcaagtgggtttattatattctaaaaggcttgctcatcttctctatttgagcattgtgaagaaatctcacaatgacacatttttgtt 46121455  T
Q  308 ggatttgttggtgaatggtcagcttaatctgattttcagataaaatacatcacaataatacatagttgcttgtaaaatatactgttcatagaataaaata 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46121456 ggatttgttggtgaatggtcagcttaatctgattttcagataaaatacatcacaataatacatagttgcttgtaaaatatactgttcatagaataaaata 46121555  T
Q  408 tattgttgcaaagnnnnnnnntattgatcgatatttttgtatcaaatgaatattctatagaatttattgttgatcaaaagtttcactacaagaatttgta 507  Q
    |||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  46121556 tattgttgcaaag-aaaaaaatattgatcgatatttttgtatcaaatgaatattctatagaatttattgttgatcaaaagtttcactacaggaatttgta 46121654  T
Q  508 caattatcaatgtaactttttcggagtgtatttgattaggattttaaaagataatttttgttgnnnnnnngtattgttgattttaaaagattttaatgac 607  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||       ||||||| ||||||||||||||||||||||    
T  46121655 caattattaatgtaactttttcggagtgtattggattaggattttaaaagataatttttgttgaaaaaaagtattgtggattttaaaagattttaatgac 46121754  T
Q  608 attttaagaaatctatcaatatttacaatttggattttaaaggattcatatcataagattttatagaacttgattttgtggatt--taagatttgaaagg 705  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||| | |||    
T  46121755 attttaaaaaatctatcaatatttacaatttggattttaaaggattcatatcataagattttaaagaacttgattttgtggatttataagatttcagagg 46121854  T
Q  706 tctatgaagtttaacattctcattcataatattcttcttcatacacactcttttatgtg 764  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46121855 tctatgaagtttaacattctcattcataatattcttcttcatacacactcttttatgtg 46121913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 532 - 569
Target Start/End: Complemental strand, 835130 - 835093
Alignment:
Q  532 agtgtatttgattaggattttaaaagataatttttgtt 569  Q
    |||||||| |||||||||||||||||||||||||||||    
T  835130 agtgtattggattaggattttaaaagataatttttgtt 835093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 532 - 569
Target Start/End: Complemental strand, 1200310 - 1200273
Alignment:
Q  532 agtgtatttgattaggattttaaaagataatttttgtt 569  Q
    |||||||| |||||||||||||||||||||||||||||    
T  1200310 agtgtattggattaggattttaaaagataatttttgtt 1200273  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 533 - 569
Target Start/End: Complemental strand, 47879795 - 47879759
Alignment:
Q  533 gtgtatttgattaggattttaaaagataatttttgtt 569  Q
    ||||||| |||||||||||||||||||||||||||||    
T  47879795 gtgtattggattaggattttaaaagataatttttgtt 47879759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 533 - 569
Target Start/End: Complemental strand, 47914873 - 47914837
Alignment:
Q  533 gtgtatttgattaggattttaaaagataatttttgtt 569  Q
    ||||||| |||||||||||||||||||||||||||||    
T  47914873 gtgtattggattaggattttaaaagataatttttgtt 47914837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 568
Target Start/End: Complemental strand, 40098568 - 40098533
Alignment:
Q  533 gtgtatttgattaggattttaaaagataatttttgt 568  Q
    ||||||||||||||||||||||||||| ||||||||    
T  40098568 gtgtatttgattaggattttaaaagattatttttgt 40098533  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 530 - 569
Target Start/End: Complemental strand, 46174827 - 46174788
Alignment:
Q  530 ggagtgtatttgattaggattttaaaagataatttttgtt 569  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  46174827 ggagtgtattcgattaggattttaaaagataatttttgtt 46174788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 620 - 670
Target Start/End: Complemental strand, 6976190 - 6976140
Alignment:
Q  620 ctatcaatatttacaatttggattttaaaggattcatatcataagatttta 670  Q
    ||||||| ||||||||||||||||| || ||||| | ||||||||||||||    
T  6976190 ctatcaagatttacaatttggatttcaatggatttacatcataagatttta 6976140  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 533 - 569
Target Start/End: Complemental strand, 7007962 - 7007926
Alignment:
Q  533 gtgtatttgattaggattttaaaagataatttttgtt 569  Q
    ||||||| |||||||||||||||||||||||||||||    
T  7007962 gtgtattggattaggattttaaaagataatttttgtt 7007926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 670
Target Start/End: Complemental strand, 9163669 - 9163620
Alignment:
Q  621 tatcaatatttacaatttggattttaaaggattcatatcataagatttta 670  Q
    |||||| ||||||||||||||||| || ||||| ||| ||||||||||||    
T  9163669 tatcaagatttacaatttggatttcaatggatttataccataagatttta 9163620  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 568
Target Start/End: Original strand, 34027520 - 34027555
Alignment:
Q  533 gtgtatttgattaggattttaaaagataatttttgt 568  Q
    ||||||||||||||||||||||||||| ||||||||    
T  34027520 gtgtatttgattaggattttaaaagattatttttgt 34027555  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 675
Target Start/End: Original strand, 28337359 - 28337414
Alignment:
Q  620 ctatcaatatttacaatttggattttaaaggattcatatcataagattttatagaa 675  Q
    ||||||| ||||| |||||| |||| ||| |||| |||||||||||||||||||||    
T  28337359 ctatcaagatttaaaatttgaatttgaaatgatttatatcataagattttatagaa 28337414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 533 - 566
Target Start/End: Complemental strand, 47781350 - 47781317
Alignment:
Q  533 gtgtatttgattaggattttaaaagataattttt 566  Q
    ||||||| ||||||||||||||||||||||||||    
T  47781350 gtgtattggattaggattttaaaagataattttt 47781317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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