View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970-Insertion-7 (Length: 710)
Name: NF4970-Insertion-7
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970-Insertion-7 |
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| [»] chr2 (3 HSPs) |
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| [»] scaffold0048 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 320 - 710
Target Start/End: Original strand, 13047414 - 13047790
Alignment:
| Q |
320 |
gagagaattatactgtcaaggcttttagtgcaattgnnnnnnntagcaacaaaacttttctgtctcagttcaaaccaaaatactaaaccaagccttt-ga |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||| |||||||| |||||| || |
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| T |
13047414 |
gagagaattatactgtcaaggcttttagtgcaattgaaaaaaatggcaacagcacttttctgtctcagtccaaaccaa-------------gccttttga |
13047500 |
T |
|
| Q |
419 |
ctgaaaactattttttgaaggaaaaaaggttaatacatcagattgactgaaaactattattgtcaaaattaactctaataaaaactattaacttgctaat |
518 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13047501 |
ctgaaaactattttttgaaggaaaaaag-ttaacacatcagattgactgaaaactattattgtcaaaattaactctaataaaaactattaacttgctaat |
13047599 |
T |
|
| Q |
519 |
aaaaactaagttaacctctaattatatagttgcgagttaatatcctaacaccatatgtgataacatttaaattattctattttgttaaattagtgttgac |
618 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13047600 |
aaaaactaagttaacctctaattatatagttgtgagttaatatcctaacaccatatgtgataacattt-aattattctattttgttaaattagtgttgac |
13047698 |
T |
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| Q |
619 |
atgtaagtataatgtttcatatgcaaaatcaattctatttaaaaatattgaaagtcaaaatcaatctcacacctataaaatcaattaagact |
710 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||| |
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| T |
13047699 |
atgtaagtataatgtttgatatgcaaaatcaattctatttaaaaatattgaacgtcaaaatcaattttacacctataaaatcaattaagact |
13047790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 13046893 - 13047138
Alignment:
| Q |
8 |
taatgcagctatggctatattttaatgtgcttgataaagaagtgtggtcaatcaaatcaaactcaagagtgtgttaggaaaaaacttggaagatacaaga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13046893 |
taatgcagctatggctatattttaatgtgcttgataaagaagtgtgctcaatcaaatcaaactcaagagtgtgttaggaaaaaacttggaagatacaaga |
13046992 |
T |
|
| Q |
108 |
gaggagagaaggatttgtagggttggtaacccctatagtagtt-------tttatacaagaatggttgtcttgcacattataagtacatcatgagttccc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13046993 |
gaggagagaaggatttgtagggttggtaacccctatagtagtttttagtctttatacaagaatggttgtcttgcacattataagtacatcatgagttccc |
13047092 |
T |
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| Q |
201 |
ttttattcttggggtaatgttattaatatatactaagttttaatat |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13047093 |
ttttattcttggggtaatgttattaatatatactaagttttaatat |
13047138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 568
Target Start/End: Complemental strand, 43141684 - 43141583
Alignment:
| Q |
468 |
aaaactattattgtcaaaattaactctaataaaaa--ctattaacttgctaataaaaactaagttaacctctaattatatagttgcgagttaatatccta |
565 |
Q |
| |
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|||||||||| || || |||||||||||||||||| ||||||||||||| ||||||| |||| || ||||| | ||||| || |||||||| ||||| |
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| T |
43141684 |
aaaactattaatgacagaattaactctaataaaaaacttattaacttgctagtaaaaac-cagttgacttctaactctatagctgtgagttaatctccta |
43141586 |
T |
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| Q |
566 |
aca |
568 |
Q |
| |
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||| |
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| T |
43141585 |
aca |
43141583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 490 - 568
Target Start/End: Original strand, 23430278 - 23430356
Alignment:
| Q |
490 |
actctaataaaaactattaacttgctaataaaaactaagttaacctctaattatatagttgcgagttaatatcctaaca |
568 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||| || |||||||| |||||||| |
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| T |
23430278 |
actcgaataaaaactattaacttgctaataaaaactaagttgacctctaattttataggtgtgagttaatctcctaaca |
23430356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 468 - 570
Target Start/End: Complemental strand, 39400104 - 39400001
Alignment:
| Q |
468 |
aaaactattattgtcaaaattaactctaataaaaa--ctattaacttgctaataaaaactaagttaacctctaattatatagttgcgagttaatatccta |
565 |
Q |
| |
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|||||||||| || || |||||||||||||||||| ||||||||||||| ||||||| |||| || ||||| | ||||| || |||||||| ||||| |
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| T |
39400104 |
aaaactattaatgacagaattaactctaataaaaaacttattaacttgctagtaaaaac-cagttgacttctaactctatagctgtgagttaatctccta |
39400006 |
T |
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| Q |
566 |
acacc |
570 |
Q |
| |
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||||| |
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| T |
39400005 |
acacc |
39400001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 468 - 569
Target Start/End: Complemental strand, 39398216 - 39398114
Alignment:
| Q |
468 |
aaaactattattgtcaaaattaactctaataaaaa--ctattaacttgctaataaaaactaagttaacctctaattatatagttgcgagttaatatccta |
565 |
Q |
| |
|
|||||||||| || || |||||||||||||||||| ||||||||||||| ||||||| |||| || ||||| | ||||| || |||||||| ||||| |
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| T |
39398216 |
aaaactattaatgacagaattaactctaataaaaaacttattaacttgctagtaaaaac-cagttgacttctaactctatagctgtgagttaatctccta |
39398118 |
T |
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| Q |
566 |
acac |
569 |
Q |
| |
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|||| |
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|
| T |
39398117 |
acac |
39398114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 559
Target Start/End: Original strand, 23438345 - 23438400
Alignment:
| Q |
504 |
tattaacttgctaataaaaactaagttaacctctaattatatagttgcgagttaat |
559 |
Q |
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||||||||||||||||||||| ||||| || ||||||| ||||| || |||||||| |
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| T |
23438345 |
tattaacttgctaataaaaacaaagttgacttctaattttatagatgtgagttaat |
23438400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 468 - 568
Target Start/End: Complemental strand, 79585 - 79485
Alignment:
| Q |
468 |
aaaactattattgtcaaaattaactctaata-aaaactattaacttgctaataaaaactaagttaacctctaattatatagttgcgagttaatatcctaa |
566 |
Q |
| |
|
|||||||||| || || |||||||||||||| |||||||||||||||||| |||||| | |||| || ||||| | |||||||| |||||||| |||||| |
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| T |
79585 |
aaaactattaatgacataattaactctaataaaaaactattaacttgctagtaaaaa-tcagttgacttctaactgtatagttgtgagttaatctcctaa |
79487 |
T |
|
| Q |
567 |
ca |
568 |
Q |
| |
|
|| |
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|
| T |
79486 |
ca |
79485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 468 - 523
Target Start/End: Complemental strand, 80942 - 80886
Alignment:
| Q |
468 |
aaaactattattgtcaaaattaactctaata-aaaactattaacttgctaataaaaa |
523 |
Q |
| |
|
|||||||||| || || |||||||||||||| |||||||||||||||||| |||||| |
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| T |
80942 |
aaaactattaatgacataattaactctaataaaaaactattaacttgctagtaaaaa |
80886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 468 - 570
Target Start/End: Complemental strand, 41408286 - 41408183
Alignment:
| Q |
468 |
aaaactattattgtcaaaattaactctaataaaaa--ctattaacttgctaataaaaactaagttaacctctaattatatagttgcgagttaatatccta |
565 |
Q |
| |
|
|||||||||| || || |||||||||||||||||| ||||||||||||| ||||||| |||| || ||||| | ||||| || |||||||| ||||| |
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| T |
41408286 |
aaaactattaatgacagaattaactctaataaaaaacttattaacttgctagtaaaaac-cagttgacttctaactctatagctgtgagttaatctccta |
41408188 |
T |
|
| Q |
566 |
acacc |
570 |
Q |
| |
|
||||| |
|
|
| T |
41408187 |
acacc |
41408183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 468 - 570
Target Start/End: Complemental strand, 3814119 - 3814016
Alignment:
| Q |
468 |
aaaactattattgtcaaaattaactctaataaaaa--ctattaacttgctaataaaaactaagttaacctctaattatatagttgcgagttaatatccta |
565 |
Q |
| |
|
|||||||||| || || |||||||||||||||||| ||||||||||||| ||||||| |||| || ||||| | ||||| || |||||||| ||||| |
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| T |
3814119 |
aaaactattaatgacagaattaactctaataaaaaacttattaacttgctagtaaaaac-cagttgacttctaactctatagctgtgagttaatctccta |
3814021 |
T |
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| Q |
566 |
acacc |
570 |
Q |
| |
|
||||| |
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|
| T |
3814020 |
acacc |
3814016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 485 - 568
Target Start/End: Complemental strand, 32703607 - 32703524
Alignment:
| Q |
485 |
aattaactctaataaaaa-ctattaacttgctaataaaaactaagttaacctctaattatatagttgcgagttaatatcctaaca |
568 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| |||| || ||||| | ||||| || |||||||| |||||||| |
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|
| T |
32703607 |
aattaactctaataaaaaactattaacttgctagtaaaaac-cagttgacttctaactgtatagctgtgagttaatctcctaaca |
32703524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 568
Target Start/End: Complemental strand, 3811287 - 3811186
Alignment:
| Q |
468 |
aaaactattattgtcaaaattaactctaataaaaa--ctattaacttgctaataaaaactaagttaacctctaattatatagttgcgagttaatatccta |
565 |
Q |
| |
|
|||||||||| || || |||||||||||||||||| ||||||||||||| ||||||| |||| || ||||| | ||||| || |||||||| ||||| |
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| T |
3811287 |
aaaactattaatgacagaattaactctaataaaaaacttattaacttgctagtaaaaac-cagttgacttctaactctatagctgtgagttaatctccta |
3811189 |
T |
|
| Q |
566 |
aca |
568 |
Q |
| |
|
||| |
|
|
| T |
3811188 |
aca |
3811186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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