View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4970-Insertion-8 (Length: 655)

Name: NF4970-Insertion-8
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4970-Insertion-8
NF4970-Insertion-8
[»] chr8 (5 HSPs)
chr8 (8-655)||(12598015-12598664)
chr8 (48-156)||(11045354-11045471)
chr8 (457-508)||(38815251-38815302)
chr8 (458-508)||(3821182-3821232)
chr8 (464-504)||(4185449-4185489)
[»] chr5 (2 HSPs)
chr5 (458-503)||(16017131-16017176)
chr5 (460-508)||(2566194-2566242)
[»] chr3 (7 HSPs)
chr3 (420-508)||(53785634-53785717)
chr3 (458-508)||(26856861-26856911)
chr3 (478-510)||(30199920-30199952)
chr3 (458-500)||(39583336-39583378)
chr3 (457-509)||(38146013-38146065)
chr3 (460-508)||(52411990-52412038)
chr3 (460-508)||(52741611-52741659)
[»] chr6 (2 HSPs)
chr6 (416-498)||(959502-959579)
chr6 (457-508)||(32115675-32115726)
[»] scaffold1768 (1 HSPs)
scaffold1768 (524-564)||(224-264)
[»] chr7 (3 HSPs)
chr7 (457-505)||(21326940-21326988)
chr7 (457-508)||(19277250-19277301)
chr7 (420-508)||(5825198-5825281)
[»] scaffold0490 (1 HSPs)
scaffold0490 (457-508)||(6291-6342)
[»] scaffold0148 (1 HSPs)
scaffold0148 (457-508)||(33207-33258)
[»] chr4 (6 HSPs)
chr4 (457-508)||(3329953-3330004)
chr4 (457-508)||(4419220-4419271)
chr4 (457-508)||(54927424-54927475)
chr4 (458-508)||(43849447-43849497)
chr4 (459-508)||(16955419-16955468)
chr4 (463-508)||(32755797-32755842)
[»] chr1 (1 HSPs)
chr1 (457-508)||(21472960-21473011)


Alignment Details
Target: chr8 (Bit Score: 570; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 8 - 655
Target Start/End: Complemental strand, 12598664 - 12598015
Alignment:
Q  8 gtgtaagcattagaagaagcagtggatgggccataagcgaaatggcgcttccttgcagcattataatatccagtgttggcagcagcattggttggtgtta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12598664 gtgtaagcattagaagaagcagtggatgggccataagcgaaatggcgcttccttgcagcattataatatccagtgttggcagcagcattggttggtgtta 12598565  T
Q  108 gactgtgaagaaacctacaagggtttctgttgcatctcccagcaagccagtaggtgcacgttgtattaatggttgtaggtttagttgttctatcgctact 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  12598564 gactgtgaagaaacctacaagggtttctgttgcatctcccagcaagccagtaggtgcatgttgtattaatggttgtaggtttagttgttctaccgctact 12598465  T
Q  208 atccatga------tgatgatactctctcacaaaaacaacctacaagattccaataacatcgtcccaaataatcagccaccgtatccattcctccttctc 301  Q
    ||||||||      ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||    
T  12598464 atccatgacgatgatgatgatactctctcacaaaaacaacctacaagattccaataaaatcgtcccaaataatcagccactgtatccattactccttctc 12598365  T
Q  302 atacaaaaaacaaacaagcagttcctcagcagaaatctaatagtttcattccattttagatagtaacacaggaattagaagcaggcaggcaacatggctt 401  Q
    |||||||||||||    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12598364 atacaaaaaacaa----gcagttcctcagcagaaatctaatagtttcatcccattttagatagtaacacaggaattagaagcaggcaggcaacatggctt 12598269  T
Q  402 ctaaacctttgtgaatgacaaaaccaatcctcttaaacattacattcatagagacgacctaggagacacaacgttgctatgcatgaccctttgaactctt 501  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12598268 ctaaacctttgggaatgacaaaaccaatcctcttaaacattacattcataaagacgacctaggagacacaacgttgctatgcatgaccctttgaactctt 12598169  T
Q  502 tgtagaatatcttaagtgtattctagaaaacaaaaagtgtcaaacacaaatgctataaaagcaagttaaatgaaacacgttttctcatgtttagccgcca 601  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12598168 tgtagaatatccgaagtgtattctagaaaacaaaaagtgtcaaacacaaatgctataaaagcaagttaaatgaaacacgttttctcatgtttagccgcca 12598069  T
Q  602 ctttgcattttaacgcggctttgagggttcctcatccaaacttcataacatcaa 655  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12598068 ctttgcattttgacgcggctttgagggttcctcatccaaacttcataacatcaa 12598015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 156
Target Start/End: Original strand, 11045354 - 11045471
Alignment:
Q  48 aatggcgcttccttgcagcattataatatccagtgttggcagca---------gcattggttggtgttagactgtgaagaaacctacaagggtttctgtt 138  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||         ||| | | ||||| || ||| ||||||||||||||||| ||||||||    
T  11045354 aatgccgcttccttgcagcattatgatatccagcgttggcagcattgcaggaagcagtcgatggtgctacactatgaagaaacctacaaggatttctgtt 11045453  T
Q  139 gcatctcccagcaagcca 156  Q
    |||| ||||||| |||||    
T  11045454 gcatttcccagcgagcca 11045471  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 457 - 508
Target Start/End: Original strand, 38815251 - 38815302
Alignment:
Q  457 gacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 508  Q
    |||||||||||||  || |||||||||||||||||||||||||| |||||||    
T  38815251 gacctaggagacatgacattgctatgcatgaccctttgaactctatgtagaa 38815302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 508
Target Start/End: Original strand, 3821182 - 3821232
Alignment:
Q  458 acctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 508  Q
    ||||||||||||  || ||||||||||| |||||||||||||| |||||||    
T  3821182 acctaggagacatgacattgctatgcattaccctttgaactctatgtagaa 3821232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 464 - 504
Target Start/End: Complemental strand, 4185489 - 4185449
Alignment:
Q  464 gagacacaacgttgctatgcatgaccctttgaactctttgt 504  Q
    |||||||||| |||||||||||||| |||||||| ||||||    
T  4185489 gagacacaacattgctatgcatgactctttgaaccctttgt 4185449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 458 - 503
Target Start/End: Original strand, 16017131 - 16017176
Alignment:
Q  458 acctaggagacacaacgttgctatgcatgaccctttgaactctttg 503  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||    
T  16017131 acctaggagacacaacattgctatgcatgaccttttgaactctttg 16017176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 460 - 508
Target Start/End: Complemental strand, 2566242 - 2566194
Alignment:
Q  460 ctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 508  Q
    ||||||||||  || ||||||||||||||| |||||||||| |||||||    
T  2566242 ctaggagacatgacattgctatgcatgaccttttgaactctatgtagaa 2566194  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 508
Target Start/End: Original strand, 53785634 - 53785717
Alignment:
Q  420 caaaaccaatcctcttaaacattacattcatagagacgacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 508  Q
    |||||||||||||| ||||||| |||||||| ||     |||||||||||  || ||||||||||||||| |||||||||| |||||||    
T  53785634 caaaaccaatcctcgtaaacataacattcatgga-----cctaggagacatgacattgctatgcatgaccttttgaactctatgtagaa 53785717  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 508
Target Start/End: Complemental strand, 26856911 - 26856861
Alignment:
Q  458 acctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 508  Q
    ||||||||||||  || |||||||||||||||||||||||||| |||||||    
T  26856911 acctaggagacatgacattgctatgcatgaccctttgaactctatgtagaa 26856861  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 510
Target Start/End: Original strand, 30199920 - 30199952
Alignment:
Q  478 ctatgcatgaccctttgaactctttgtagaata 510  Q
    |||||||||||||||||||||||||||||||||    
T  30199920 ctatgcatgaccctttgaactctttgtagaata 30199952  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 500
Target Start/End: Complemental strand, 39583378 - 39583336
Alignment:
Q  458 acctaggagacacaacgttgctatgcatgaccctttgaactct 500  Q
    ||||||||||||  || ||||||||||||||||||||||||||    
T  39583378 acctaggagacatgacattgctatgcatgaccctttgaactct 39583336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 457 - 509
Target Start/End: Original strand, 38146013 - 38146065
Alignment:
Q  457 gacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaat 509  Q
    |||||||||||||  || ||| ||||||||||||||||||||||  |||||||    
T  38146013 gacctaggagacatgacattgttatgcatgaccctttgaactctaagtagaat 38146065  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 460 - 508
Target Start/End: Complemental strand, 52412038 - 52411990
Alignment:
Q  460 ctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 508  Q
    ||||||||||  || ||| |||||||||||||||||||||| |||||||    
T  52412038 ctaggagacatgacattgttatgcatgaccctttgaactctatgtagaa 52411990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 460 - 508
Target Start/End: Complemental strand, 52741659 - 52741611
Alignment:
Q  460 ctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 508  Q
    ||||||||||  || ||||||||||||||| |||||||||| |||||||    
T  52741659 ctaggagacatgacattgctatgcatgaccttttgaactctatgtagaa 52741611  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 498
Target Start/End: Original strand, 959502 - 959579
Alignment:
Q  416 atgacaaaaccaatcctcttaaacattacattcatagagacgacctaggagacacaacgttgctatgcatgaccctttgaact 498  Q
    ||||||||| |||||||| ||||||  |||||||| ||     ||||||||||||||| ||||||||||||||| ||||||||    
T  959502 atgacaaaatcaatcctcgtaaacacaacattcatgga-----cctaggagacacaacattgctatgcatgaccttttgaact 959579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 508
Target Start/End: Original strand, 32115675 - 32115726
Alignment:
Q  457 gacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 508  Q
    |||||||||||||  || ||| ||||||||||| ||||||||||||||||||    
T  32115675 gacctaggagacatgacattgttatgcatgaccttttgaactctttgtagaa 32115726  T

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Target: scaffold1768 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 564
Target Start/End: Complemental strand, 264 - 224
Alignment:
Q  524 ctagaaaacaaaaagtgtcaaacacaaatgctataaaagca 564  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  264 ctagaaaaccaaaagtgtcaaacacaaatggtataaaagca 224  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 457 - 505
Target Start/End: Complemental strand, 21326988 - 21326940
Alignment:
Q  457 gacctaggagacacaacgttgctatgcatgaccctttgaactctttgta 505  Q
    ||||||||||||| ||| ||||||||||||||| |||||||||| ||||    
T  21326988 gacctaggagacataacattgctatgcatgaccttttgaactctatgta 21326940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 508
Target Start/End: Original strand, 19277250 - 19277301
Alignment:
Q  457 gacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 508  Q
    |||||||||||||  || ||||||||||||||| |||||||||| |||||||    
T  19277250 gacctaggagacatgacattgctatgcatgaccttttgaactctatgtagaa 19277301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 420 - 508
Target Start/End: Original strand, 5825198 - 5825281
Alignment:
Q  420 caaaaccaatcctcttaaacattacattcatagagacgacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 508  Q
    |||||||||||||| ||||||  |||| ||||     ||||||||||||| ||| ||||||||||| |||||||  ||||| |||||||    
T  5825198 caaaaccaatcctcgtaaacacaacatccata-----gacctaggagacataacattgctatgcataaccctttcgactctatgtagaa 5825281  T

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Target: scaffold0490 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 508
Target Start/End: Original strand, 6291 - 6342
Alignment:
Q  457 gacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 508  Q
    |||||||||||||  || ||||||||||||||| |||||||||| |||||||    
T  6291 gacctaggagacatgacattgctatgcatgaccttttgaactctatgtagaa 6342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 508
Target Start/End: Original strand, 33207 - 33258
Alignment:
Q  457 gacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 508  Q
    ||||||||||||| ||  ||||||||||||||| |||||||||| |||||||    
T  33207 gacctaggagacataaaattgctatgcatgaccttttgaactctatgtagaa 33258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 508
Target Start/End: Original strand, 3329953 - 3330004
Alignment:
Q  457 gacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 508  Q
    ||||||||||||| ||| ||||||||||| |||||||| ||||| |||||||    
T  3329953 gacctaggagacataacattgctatgcataaccctttggactctatgtagaa 3330004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 508
Target Start/End: Original strand, 4419220 - 4419271
Alignment:
Q  457 gacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 508  Q
    ||||||||||||| ||| ||| ||||||| |||||||||||||| |||||||    
T  4419220 gacctaggagacataacattgttatgcataaccctttgaactctatgtagaa 4419271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 508
Target Start/End: Original strand, 54927424 - 54927475
Alignment:
Q  457 gacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 508  Q
    |||||| |||||||||| ||| |||||||||| |||||| ||||||||||||    
T  54927424 gacctatgagacacaacattgttatgcatgactctttgagctctttgtagaa 54927475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 508
Target Start/End: Complemental strand, 43849497 - 43849447
Alignment:
Q  458 acctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 508  Q
    ||||||||||  |||| ||| ||||||||||| ||||||||||||||||||    
T  43849497 acctaggagatgcaacattgttatgcatgaccatttgaactctttgtagaa 43849447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 508
Target Start/End: Original strand, 16955419 - 16955468
Alignment:
Q  459 cctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 508  Q
    |||||||||||  || ||||||||||||||| |||||||||| |||||||    
T  16955419 cctaggagacatgacattgctatgcatgaccttttgaactctatgtagaa 16955468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 508
Target Start/End: Complemental strand, 32755842 - 32755797
Alignment:
Q  463 ggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 508  Q
    ||||||||| | ||||||||||||||| || |||||||||||||||    
T  32755842 ggagacacaccattgctatgcatgaccgttggaactctttgtagaa 32755797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 508
Target Start/End: Original strand, 21472960 - 21473011
Alignment:
Q  457 gacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 508  Q
    |||||||||||||  || ||||||||||||||| |||||||||| |||||||    
T  21472960 gacctaggagacatgacattgctatgcatgaccttttgaactctatgtagaa 21473011  T

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