View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970-Insertion-9 (Length: 532)
Name: NF4970-Insertion-9
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970-Insertion-9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 222 - 532
Target Start/End: Complemental strand, 10799519 - 10799203
Alignment:
| Q |
222 |
cttcatcgtcatctttctcattttttctctcttaaactaacttcattataggaaattct------nnnnnnnnnntagattaatcttttttctcgaatct |
315 |
Q |
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| T |
10799519 |
cttcatcgtcatctttcccatttttttt-tcttaaactaagttcattataggaaattctaaaaaaaaaaaaaaaatggattaatcttctttctcgaatct |
10799421 |
T |
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| Q |
316 |
cactcgaaaattcttctctcatcgcccaatcgcaatttctcccataggacacacacttcgccttatcaacctccaaacacgtcgtcttctccatcacctt |
415 |
Q |
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| T |
10799420 |
cactcaaaaattcttctctcatcgcccaatcgcaatttctcccataagacacacacttcgcattatcaacctccaaacacgtcgtcttctccatcacctt |
10799321 |
T |
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| Q |
416 |
c-aaaaaattcaaaataccctgatccaattcatcttcttctaaactctcagtgacgtcatttttgtcatctttgttcttaactactttcgacatacaatc |
514 |
Q |
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| T |
10799320 |
caaaaaaattcaaaatacccaaatccaattcatcttcttctaaactctcagtgacgtcatttttgtcatttccgttcttaactactttcgacatacaatc |
10799221 |
T |
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| Q |
515 |
attgattatgtctcttta |
532 |
Q |
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| T |
10799220 |
gttgattatatctcttta |
10799203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 291 - 527
Target Start/End: Complemental strand, 10808606 - 10808371
Alignment:
| Q |
291 |
tagattaatcttttttctcgaatctcactcgaaaattcttctctcatcgcccaatcgcaatttctcccataggacacacacttcgccttatcaacctcca |
390 |
Q |
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| T |
10808606 |
tagattaatcttctttctcgaatctcactagattattcttctcccatcgcccaagcacaatttctcccataagacacacactttgcattatcaacctcca |
10808507 |
T |
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| Q |
391 |
aacacgtcgtcttctccatcaccttcaaaaaattcaaaataccctgatccaattcatcttcttctaaactctcagtgacgtcatttttgtcatctttgtt |
490 |
Q |
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| T |
10808506 |
aacacatcgtcttctccatcaccttcaaaaaattc-aaatacccagatccaattcatcttcttctaaactctcagtgtcgtcatttttgtcatctctgct |
10808408 |
T |
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| Q |
491 |
cttaactactttcgacatacaatcattgattatgtct |
527 |
Q |
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| T |
10808407 |
cttaactacttttgacatacaatcgttgattatgtct |
10808371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 24732314 - 24732222
Alignment:
| Q |
15 |
ttaccataccggacaaaaccaaaagcagctccgttgacattacgtttacgagccatatagacatcctccagaaccccacacacctcaaaacct |
107 |
Q |
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| T |
24732314 |
ttaccatagcgtacaaaaccaaacgcaccaccatttacattatgtttacgagccaaatacacatcctccataataccacacacctcaaaacct |
24732222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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