View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4970_high_1 (Length: 701)

Name: NF4970_high_1
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4970_high_1
NF4970_high_1
[»] chr7 (2 HSPs)
chr7 (282-683)||(3087117-3087518)
chr7 (21-235)||(3087598-3087820)
[»] chr6 (13 HSPs)
chr6 (477-683)||(4299050-4299256)
chr6 (481-677)||(4622843-4623039)
chr6 (477-678)||(4626653-4626854)
chr6 (481-549)||(4557956-4558024)
chr6 (628-683)||(4259534-4259589)
chr6 (481-667)||(4586349-4586535)
chr6 (157-238)||(4623136-4623217)
chr6 (487-533)||(4612957-4613003)
chr6 (612-668)||(4255985-4256041)
chr6 (641-683)||(4602489-4602531)
chr6 (607-666)||(3172455-3172514)
chr6 (481-538)||(4571814-4571871)
chr6 (487-539)||(4599011-4599063)
[»] chr8 (2 HSPs)
chr8 (481-549)||(16685519-16685587)
chr8 (575-667)||(20863170-20863262)
[»] chr5 (1 HSPs)
chr5 (619-683)||(24107072-24107136)
[»] scaffold0288 (1 HSPs)
scaffold0288 (607-671)||(3077-3141)
[»] scaffold0477 (2 HSPs)
scaffold0477 (489-530)||(3930-3971)
scaffold0477 (598-683)||(4039-4124)


Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 282 - 683
Target Start/End: Complemental strand, 3087518 - 3087117
Alignment:
Q  282 tatgaataatattagtaacgaactctttgtcaaacacttttcaacacactctttctgatttacattcatgagtcccacataatttgacgagactcataaa 381  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||| |||||||||    
T  3087518 tatgaataatattagtaacaaactctttgtcaaacacttttcaacgcactctttctgattaacattcatgagtcccacataatttaacgaaactcataaa 3087419  T
Q  382 tgttaaccaatnnnnnnngtgtgttagaaagcgttagagagtgtattcctagtaagctattgacttcttctataattatgacaagcagatgagatttta- 480  Q
    ||| ||||| |       ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||      
T  3087418 tgtaaaccagtgaaaaaagtgtgttagaaagcgtt-gagagtgtattcctagcaagctattgacttcttctataattatgacaagcatatgagagtttct 3087320  T
Q  481 gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccattttagaat 580  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3087319 gacgccagagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccattttagaat 3087220  T
Q  581 ttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattctgt 680  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3087219 ttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattctgt 3087120  T
Q  681 gtt 683  Q
    |||    
T  3087119 gtt 3087117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 3087820 - 3087598
Alignment:
Q  21 aggtctaacaccgctcaaaggtaataatttgcgatctctctctc--------ataaatctaacattcgtagctatgtaatatgagagtatgttcgttcaa 112  Q
    |||||||| |||||||||||||||||||||||||||||||||||        |||||| |||||||||| |||||||||||||||||||||||||||  |    
T  3087820 aggtctaataccgctcaaaggtaataatttgcgatctctctctctttctctcataaatataacattcgtggctatgtaatatgagagtatgttcgtttga 3087721  T
Q  113 atttgtttcataaagga-aatttagtttaaagactttatagcaagttgtcgagtagatatactcaatgagaacttttaatttgacggttggattgataaa 211  Q
    ||||||||||||||| | |||||||||| ||||| ||||||||| ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||    
T  3087720 atttgtttcataaagtataatttagtttgaagaccttatagcaatttgtcgagttgatatacttaatgagaacttttaattcgacggttggattgataaa 3087621  T
Q  212 atttaatattgataatgagtcatt 235  Q
    ||||||||| || |||||||||||    
T  3087620 atttaatatcga-aatgagtcatt 3087598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 477 - 683
Target Start/End: Original strand, 4299050 - 4299256
Alignment:
Q  477 tttagacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccatttta 576  Q
    |||||||| |||| |||||||||||||||||||||||||||||||| |||| |||||  ||||| | ||||||  |  | ||| ||| |||  |||  ||    
T  4299050 tttagacatcaaactagactgtattccaggattgcagaactttcgattgaaagatctaactgactttataaggagtacaaatccaaatgatgtcatggta 4299149  T
Q  577 gaatttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatatt 676  Q
    ||||||| |||||||| ||  ||||| || |||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||||||||| || ||||    
T  4299150 gaatttgccattgaagcggcagatagatttcacaaagcatctgctattgtttttaatacttatgatgaacttgagagtgatgtaatgaatgctctctatt 4299249  T
Q  677 ctgtgtt 683  Q
    || ||||    
T  4299250 ctatgtt 4299256  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 481 - 677
Target Start/End: Complemental strand, 4623039 - 4622843
Alignment:
Q  481 gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccattttagaat 580  Q
    |||||| ||||||||||| |||| |||||| ||||||||||  | |||||| |||||||| | |||||| ||  ||| | ||| |||  |||  ||||||    
T  4623039 gacaccgaagtagactgtgttcctggattgaagaactttcggttaaaggatttgcctgactttataaggattacagagccaaatgatgtcatggtagaat 4622940  T
Q  581 ttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattc 677  Q
    || ||||||||| ||  ||  | || |||||| ||||||||||||| ||||| |||||| |||||||||||| |||||  ||||||||||| |||||    
T  4622939 ttctcattgaagcggcagaacgatttcacaaatcctctgctattatttttaatacttataatgaacttgagactgatgcgatgaatgcgctctattc 4622843  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 477 - 678
Target Start/End: Complemental strand, 4626854 - 4626653
Alignment:
Q  477 tttagacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccatttta 576  Q
    ||||||||||||| |||| |||||||| ||||||||||||||||| |||||||| || | | || | ||||||     | |||  || |||  |||  ||    
T  4626854 tttagacaccaaactagattgtattcccggattgcagaactttcggctgaaggaccttcttaactttataaggacaacaaatcctaatgatgtcatggta 4626755  T
Q  577 gaatttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatatt 676  Q
    |||||| ||||||||| ||  ||||| || |||| ||| || |||||| | || |||||||| |||||||||||| ||||||||||||||||||| ||||    
T  4626754 gaatttctcattgaagcggcagatagatttcacagagcatcggctattgttttcaacacttacgatgaacttgagggtgatgtaatgaatgcgctctatt 4626655  T
Q  677 ct 678  Q
    ||    
T  4626654 ct 4626653  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 481 - 549
Target Start/End: Complemental strand, 4558024 - 4557956
Alignment:
Q  481 gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagg 549  Q
    ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  4558024 gacactaaagtggattgtattccaggattgcagaactttcgactgaaggatctgcctgactttataagg 4557956  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 628 - 683
Target Start/End: Original strand, 4259534 - 4259589
Alignment:
Q  628 tttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattctgtgtt 683  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||    
T  4259534 tttaacacttatgatgaacttgagagtgatgtaatgaatgtgctctattctatgtt 4259589  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 481 - 667
Target Start/End: Complemental strand, 4586535 - 4586349
Alignment:
Q  481 gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccattttagaat 580  Q
    ||||| ||||| |||||||||||||||||| ||||||||||||| |||||| |||||||| | |||||| ||   |||| ||| ||| | ||  ||||||    
T  4586535 gacactaaagtggactgtattccaggattggagaactttcgactaaaggatttgcctgactttataaggattactgatccaaatgattcgatcatagaat 4586436  T
Q  581 ttgtcattgaagtgg--gggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatg 667  Q
    || |||||||||  |  || |  |||  ||||||| ||||||| |||| ||||| |||| ||||||||||||||  |||||||| ||||    
T  4586435 ttatcattgaaggcgcaggaacggct--cacaaagactctgcttttatttttaatacttctgatgaacttgagaaggatgtaataaatg 4586349  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 4623217 - 4623136
Alignment:
Q  157 ttgtcgagtagatatactcaatgagaacttttaatttgacggttggattgataaaatttaatattgataatgagtcattaag 238  Q
    |||| |||| |||||||||||| |||| ||||||||||||||||||||||||||||| | || || | ||||||| ||||||    
T  4623217 ttgttgagttgatatactcaataagaatttttaatttgacggttggattgataaaatctgatgtttacaatgagttattaag 4623136  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 487 - 533
Target Start/End: Original strand, 4612957 - 4613003
Alignment:
Q  487 aaagtagactgtattccaggattgcagaactttcgactgaaggatct 533  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||    
T  4612957 aaagtggactgtattcaaggattgcagaactttcgactgaaggatct 4613003  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 612 - 668
Target Start/End: Original strand, 4255985 - 4256041
Alignment:
Q  612 agcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgc 668  Q
    ||||||||||||| | |||||||||||| ||||||||||||| |||||| |||||||    
T  4255985 agcctctgctattgtttttaacacttataatgaacttgagagcgatgtattgaatgc 4256041  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 641 - 683
Target Start/End: Complemental strand, 4602531 - 4602489
Alignment:
Q  641 atgaacttgagagtgatgtaatgaatgcgctatattctgtgtt 683  Q
    |||||||||||||||||||||||||||| ||||||||| ||||    
T  4602531 atgaacttgagagtgatgtaatgaatgcactatattctatgtt 4602489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 666
Target Start/End: Complemental strand, 3172514 - 3172455
Alignment:
Q  607 cacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaat 666  Q
    |||||||| ||||||||| | || ||||||| | ||||||||||||||||||| ||||||    
T  3172514 cacaaagcttctgctattgttttcaacacttctaatgaacttgagagtgatgttatgaat 3172455  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 538
Target Start/End: Complemental strand, 4571871 - 4571814
Alignment:
Q  481 gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctg 538  Q
    ||||| ||||| |||||||| |||||| || ||||||||||||||| |||| ||||||    
T  4571871 gacactaaagtggactgtatgccaggactgaagaactttcgactgagggatttgcctg 4571814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 487 - 539
Target Start/End: Complemental strand, 4599063 - 4599011
Alignment:
Q  487 aaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctga 539  Q
    |||||||| |||||||| ||| |||| |||||||||||||| ||||| |||||    
T  4599063 aaagtagattgtattcctggactgcaaaactttcgactgaaagatcttcctga 4599011  T

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Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 481 - 549
Target Start/End: Original strand, 16685519 - 16685587
Alignment:
Q  481 gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagg 549  Q
    ||||| ||||| |||||||||||||||||||||||  ||||||||||||||||||||||| | ||||||    
T  16685519 gacactaaagtggactgtattccaggattgcagaatattcgactgaaggatctgcctgactttataagg 16685587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 575 - 667
Target Start/End: Original strand, 20863170 - 20863262
Alignment:
Q  575 tagaatttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatg 667  Q
    |||||||| |||||||||| |  ||||| || |||| ||||||||||||| | || || ||||   |||| |||||||||||||| |||||||    
T  20863170 tagaatttctcattgaagtagtagatagatttcacagagcctctgctattgttttcaatactttcaatgagcttgagagtgatgttatgaatg 20863262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 619 - 683
Target Start/End: Complemental strand, 24107136 - 24107072
Alignment:
Q  619 gctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattctgtgtt 683  Q
    |||||| | |||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||    
T  24107136 gctattgtttttaacgcttatgatgaacttgagagtgatgtaatgaatacgctctattctatgtt 24107072  T

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Target: scaffold0288 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 607 - 671
Target Start/End: Original strand, 3077 - 3141
Alignment:
Q  607 cacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgct 671  Q
    |||| ||| ||||| ||| | |||||||||||| |||||||||||||||||||| ||||||||||    
T  3077 cacagagcttctgcaattgtttttaacacttataatgaacttgagagtgatgtactgaatgcgct 3141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 530
Target Start/End: Original strand, 3930 - 3971
Alignment:
Q  489 agtagactgtattccaggattgcagaactttcgactgaagga 530  Q
    ||||||| ||||||||||||||||||||||||| ||||||||    
T  3930 agtagacggtattccaggattgcagaactttcggctgaagga 3971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 598 - 683
Target Start/End: Original strand, 4039 - 4124
Alignment:
Q  598 gatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattctgtgtt 683  Q
    ||||| || |||||||||||  ||||| | || |||||||| |||||||||||||| | |||| ||||||| || |||||| ||||    
T  4039 gatagattccacaaagcctcgactattgttttcaacacttacgatgaacttgagagcggtgtattgaatgctctctattctatgtt 4124  T

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