View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970_high_10 (Length: 457)
Name: NF4970_high_10
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 10 - 440
Target Start/End: Original strand, 6460224 - 6460658
Alignment:
| Q |
10 |
attattcttaccaattatatattgcaatat----atacctctaaacttataaaagtcaacaaa-tattattatatgccgtgtcactcaataatacaagtg |
104 |
Q |
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| T |
6460224 |
attattcttaccaattatatattgcaatagtataatacctctaaacttatataagtcaacaaaatattattatatgccgtgtcactcaataatacaagtg |
6460323 |
T |
|
| Q |
105 |
tttttctaaatnnnnnnnntagaaattttttattcatggctgagataagccaatagtacaatttgtgcaaatcatagtaaaaaattctagttagtaaagg |
204 |
Q |
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| T |
6460324 |
tttttctaaataaaaaaa-tagaaaaattttattcatggctgagataagccaatagtacaatttgtgcaaatcatagtcaaaaattctagttaggaaagg |
6460422 |
T |
|
| Q |
205 |
acaaacctcaaaatccagtgcctttaaaagcccatgtctttctaaactaaagctcacatcaatacatcatcacttatttctttcattcacctttctcctc |
304 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6460423 |
acaaacctcaaaatccagtgcctttaaaagcccttgtctttctaaactaaagctcacatcaatacatcatcacttatttctttcattcacctttctcctc |
6460522 |
T |
|
| Q |
305 |
attatactagttagcaaaactcataagaaaaaacaatggaagttttgcaaaatggctttgccaaatttgccaccatcaccaaacctattgaggtacccct |
404 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6460523 |
attatactagctagcaaaactcataagaaaaaacaatggaagttttgcaaaatggctttgccaaatttgccaccatcaccaaacctattgaggtacccct |
6460622 |
T |
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| Q |
405 |
tactaatggtaatggaacaataaatcaccttaactt |
440 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6460623 |
tactaatggtaatggaacaataaatcaccttaactt |
6460658 |
T |
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