View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4970_high_12 (Length: 445)
Name: NF4970_high_12
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 30 - 427
Target Start/End: Complemental strand, 54733543 - 54733146
Alignment:
| Q |
30 |
tcacatagttgtttgttcattaaacagaagaagacacataaaggtttaaccttagtttacaatccaattttcacacaaattacatacacagattagctag |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54733543 |
tcacatagttgtttgttcattaaacagaagaagacacataaaggtttaaccttagtttacaatccaattttcaaacaaattacatacacagattagctag |
54733444 |
T |
|
| Q |
130 |
gaataaatatggtttgtacttcatttattcgtagcttctgttgtcttgcaatgaatgcctccacggtgcgacgaaattcgtcgctgctcattccatcttc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
54733443 |
gaataaatatggtttgtacttcatttattcgtagcttccgttgtcttgcaatgaatgcctccaccgtgcgacgaaattcgtcgctgctcattccatcttc |
54733344 |
T |
|
| Q |
230 |
gggatataaactccattctttctctttatcaacttcaatgtttttcctcttactcttatcattatcactctcacacctttgcaacactctttgatccttc |
329 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54733343 |
aggatataaactccattttttctctttatcaacttcaatgtttttcctcttactcttatcattatcactctcacacctttgcaacactctttgatccttc |
54733244 |
T |
|
| Q |
330 |
gcatcatcactattcacacccctcaccaactcaatttccgattgacacctcctatatcccttcacttccaaacccatctctgtttttatctcctgttt |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54733243 |
gcatcatcactattcacacccctcaccaactcaatttccgattgacacctcctatatcccttcacttccaaacccatctctgtttttatctcctgttt |
54733146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University