View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4970_high_15 (Length: 398)
Name: NF4970_high_15
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 195 - 325
Target Start/End: Complemental strand, 25941268 - 25941138
Alignment:
| Q |
195 |
accaacactaataaaaccccagctgtcaacaatcaacaatggggcccaccaagagaaagtgggtccctcggattaatgggtcctgataacacttctttct |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25941268 |
accaacactaataaaaccccagctgtcaacaatcaacaatggggcccaccaagagaaagtgggtccctcggattaatgggtcctgataacacttctttct |
25941169 |
T |
|
| Q |
295 |
gtaaacaagtgatcaaaaacctcattgcaag |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
25941168 |
gtaaacaagtgatcaaaaacctcattgcaag |
25941138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 25941450 - 25941343
Alignment:
| Q |
13 |
aaaattacccaatccattatcattcagaatattctcatattgaacatgacgcttcagcttctcactatcaataactgtccctggatgccatgatcccaga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25941450 |
aaaattacccaatccattatcattcagaatattctcatattgaacatgacgcttcagcttctcactatcaataactgtccctggatgccatgatcccaga |
25941351 |
T |
|
| Q |
113 |
aacccctc |
120 |
Q |
| |
|
|||||||| |
|
|
| T |
25941350 |
aacccctc |
25941343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University