View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970_high_20 (Length: 381)
Name: NF4970_high_20
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 371
Target Start/End: Complemental strand, 46367306 - 46366951
Alignment:
| Q |
19 |
gagaaatcgaagcgaacagataccaactgggagaatttgatcagaaaattaaagtttgtgaggtgaggaccattttcatactagtacatagtagtatagt |
118 |
Q |
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| T |
46367306 |
gagaaatcgaagcgaacagataccaactgggagaatttgatcagaaaattaaagtttgtgaggtgaggaccattttcatactagtacatagtagtatagt |
46367207 |
T |
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| Q |
119 |
aaaataatagtaatccaacgtgactatttaaatggcttttgtaatttgtttgcatgctcattcacagggatccatggcatggcacatttaatgcacttag |
218 |
Q |
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| T |
46367206 |
aaaataatagtaatccaacgtgactatttaaatggcttttgtaatttgtttgcatgctcattcacagggatccatggcatggcacatttaatgcacttag |
46367107 |
T |
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| Q |
219 |
agtcactgagatttgtttttcatatacaagtgaagaaggcatgggcttgttttgtttccgcatgtagaca------tatggttatggttatgtaattaat |
312 |
Q |
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| T |
46367106 |
agtcactgagatttgtttttcatatacaag---ggaaggcatgggcttgttttgtttccgcatgtagacatatggttatggttatggttatgtaatttat |
46367010 |
T |
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| Q |
313 |
attttcttttgctaataaaactagtatatagtacatgcaatttatatatctatcttcat |
371 |
Q |
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| T |
46367009 |
attttcttttgctaataaaactagtatatagtacatgcaatttatatatctatcttcat |
46366951 |
T |
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