View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970_high_23 (Length: 368)
Name: NF4970_high_23
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 51 - 349
Target Start/End: Original strand, 46734882 - 46735181
Alignment:
| Q |
51 |
agatttctcactgaattgttatgtttaattttctagtgaaagtgttggactggggtgaggatggtgttgccactgctgctgaaactgctgctttacgagc |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46734882 |
agatttctcactgaattgttatgtttaattttctagtgaaagtgttggactggggtgaggatggtgttgccactgctgctgaaactgctgctttacgagc |
46734981 |
T |
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| Q |
151 |
atcatttcggcaggaggttactgtgtggcaaaaacttgatcattcaaatgtcacaaaagtataaacttaatatccttcacactctcatttatttaaattc |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46734982 |
atcatttcggcaggaggttactgtgtggcaaaaacttgatcattcaaatgtcacaaaagtataaacttaatatccttcacactctcatttatttaaattc |
46735081 |
T |
|
| Q |
251 |
ataattactaataaacttttgtatgcttatttttctcctttcctttatgatgtggaactatagga-ttttattttttaaagcgtagttttgtaattgttc |
349 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
46735082 |
atgattactaataaacttttgtatgcttatttttctcctttcctttatgatgtggaactataggatttttattttttaaagcgtagttttgtaattgttc |
46735181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 142 - 349
Target Start/End: Complemental strand, 19411404 - 19411192
Alignment:
| Q |
142 |
tttacgagcatcatttcggcaggaggttactgtgtggcaaaaacttgatcattcaaatgtcacaaaagtataaacttaatatccttcacactctcattta |
241 |
Q |
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| T |
19411404 |
tttacgagcatcatttcggcaggaggttactgtgtagcaaaaacttgatcattcaaatgtcacaaaagtacaaacttaatatccttcacactctcattta |
19411305 |
T |
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| Q |
242 |
tttaaattcataattacta-ataaact--tttgtatgcttatttttctcctttcctttatgatgtggaactatagga-ttttat-tttttaaagcgtagt |
336 |
Q |
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| T |
19411304 |
tttaaattcatgattactacttaaaataatttgtattcttatttttctcctttcctttatgaggtggagctgtaggatttttatatttttaacgcatagt |
19411205 |
T |
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| Q |
337 |
tttgtaattgttc |
349 |
Q |
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||| ||||||||| |
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| T |
19411204 |
tttataattgttc |
19411192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 85 - 211
Target Start/End: Original strand, 984366 - 984492
Alignment:
| Q |
85 |
agtgaaagtgttggactggggtgaggatggtgttgccactgctgctgaaactgctgctttacgagcatcatttcggcaggaggttactgtgtggcaaaaa |
184 |
Q |
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||||||||||||||| |||||||||||||||| |||||| ||||| ||||||||||||||||| ||||| ||| ||||||||||| | || ||||| ||| |
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| T |
984366 |
agtgaaagtgttggattggggtgaggatggtgctgccaccgctgcagaaactgctgctttacgtgcatcttttaggcaggaggttgccgtctggcacaaa |
984465 |
T |
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| Q |
185 |
cttgatcattcaaatgtcacaaaagta |
211 |
Q |
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|| || ||| |||||||||| |||||| |
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| T |
984466 |
ctcgaccatccaaatgtcactaaagta |
984492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 211
Target Start/End: Original strand, 37222641 - 37222765
Alignment:
| Q |
87 |
tgaaagtgttggactggggtgaggatggtgttgccactgctgctgaaactgctgctttacgagcatcatttcggcaggaggttactgtgtggcaaaaact |
186 |
Q |
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||||||||||||| |||||||||||||||| |||||| ||||| |||||||| |||||||| ||||| ||| ||||||||||| | || ||| | ||||| |
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| T |
37222641 |
tgaaagtgttggattggggtgaggatggtgctgccaccgctgcggaaactgccgctttacgtgcatcctttaggcaggaggttgccgtctggtacaaact |
37222740 |
T |
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| Q |
187 |
tgatcattcaaatgtcacaaaagta |
211 |
Q |
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|| ||| |||||| ||| |||||| |
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| T |
37222741 |
cgaccatccaaatgccacgaaagta |
37222765 |
T |
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