View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970_high_24 (Length: 365)
Name: NF4970_high_24
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 8 - 347
Target Start/End: Complemental strand, 38533401 - 38533062
Alignment:
| Q |
8 |
aaattattcttacaaagaaactcatcagcataaagtttctcaaccctacgatccacatcatgcaaaaacacatgcgtcacaccagatcccttcctattcc |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38533401 |
aaattcttcttacaaagaaactcatcagcataaagtttctcaaccctacgatccacatcatgcaaaaacacatgcgtcacaccagatcccttcctattcc |
38533302 |
T |
|
| Q |
108 |
tcgccataacagcagctgaaaacaccgccgccattctccccggcgcctccgcgaaataccctttcggcgcatcgatcataataagatcccactccgtatc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38533301 |
tcgccataacagcagctgaaaacaccgccgccattctccccggcgcctccgcgaaataccctttcggcgcatcgatcataataagatcccactccgtatc |
38533202 |
T |
|
| Q |
208 |
gtaaacctcatcgggtaaattctcaagcgcaagcttgcatgctttgtttccacgtagaaaagctttagaaggtgaacacataggttccttgcggtaggag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38533201 |
gtaaacctcatcgggtaaattctcaagcgcaagcttgcatgctttgtttccacgtagaaaagctttagaaggtgaacacataggttccttgcggtaggag |
38533102 |
T |
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| Q |
308 |
gagatgagtttgttggcttcacgaagctgggttcgataac |
347 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||| |
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| T |
38533101 |
gagatgagtttgctggcttcacgaagctgggttcgataac |
38533062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 34715061 - 34715272
Alignment:
| Q |
8 |
aaattattcttacaaagaaactcatcagcataaagtttctcaaccctacgatccacatcatgcaaaaacacatgcgtcacaccagatcccttcctattcc |
107 |
Q |
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| T |
34715061 |
aaattcttcctacaaagaaattcttcggcataaactttctcaaccttccgatccacatcatgcaaaaacacgtgcgtcacaccggaaccttttctatttc |
34715160 |
T |
|
| Q |
108 |
tcgccataacagcagctgaaaacaccgccgccattctccccggcgcctccgcgaaataccctttcggcgcatcgatcataataagatcccactccgtatc |
207 |
Q |
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||||||| || | |||||| | ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| || | |||||||||||| || |
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| T |
34715161 |
tcgccatcaccgtcattgaaaatatcgccgccattctccccggcgcctccgcgaaataacctctcggcgcatcgatcattatcaaatcccactccgtttc |
34715260 |
T |
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| Q |
208 |
gtaaacctcatc |
219 |
Q |
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||||| |||||| |
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| T |
34715261 |
gtaaatctcatc |
34715272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 10189323 - 10189258
Alignment:
| Q |
25 |
aaactcatcagcataaagtttctcaaccctacgatccacatcatgcaaaaacacatgcgtcacacc |
90 |
Q |
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|||||| | ||||||||||||||||||| | |||||||||||| | |||||||||||||||||| |
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| T |
10189323 |
aaactccttagcataaagtttctcaacctccctatccacatcatgaagaaacacatgcgtcacacc |
10189258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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