View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4970_high_26 (Length: 337)

Name: NF4970_high_26
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4970_high_26
NF4970_high_26
[»] chr3 (4 HSPs)
chr3 (1-181)||(33306048-33306228)
chr3 (271-324)||(15497244-15497300)
chr3 (271-325)||(20997145-20997201)
chr3 (271-325)||(43317656-43317713)
[»] chr4 (2 HSPs)
chr4 (271-325)||(40848998-40849055)
chr4 (271-325)||(46046950-46047007)
[»] scaffold1793 (1 HSPs)
scaffold1793 (271-325)||(1116-1173)
[»] chr8 (1 HSPs)
chr8 (271-325)||(37034032-37034089)
[»] chr7 (4 HSPs)
chr7 (271-325)||(5482665-5482722)
chr7 (271-325)||(23153868-23153925)
chr7 (271-325)||(36759009-36759066)
chr7 (271-325)||(36764777-36764834)
[»] chr6 (1 HSPs)
chr6 (271-325)||(34207819-34207876)
[»] chr5 (4 HSPs)
chr5 (271-325)||(10041999-10042056)
chr5 (271-325)||(30511120-30511177)
chr5 (271-325)||(30551460-30551517)
chr5 (271-325)||(42112536-42112593)
[»] chr1 (1 HSPs)
chr1 (271-325)||(16096092-16096147)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 33306228 - 33306048
Alignment:
Q  1 gtggagtgaagaaacggttgttggttttggtgtgcagaatgtgacgaaatacaatgcggaaagaagacatagccattgccatcgctctggttctgccttc 100  Q
    ||||||||||||||||||||||| |||| ||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33306228 gtggagtgaagaaacggttgttgattttagtgtgtagtatgtgacgaaatacaatgcggaaagaagacatagccatggccatcgctctggttctgccttc 33306129  T
Q  101 ttctatctgctcttgttgtgtgtctatcgatattcgatagtagatatttttgttccgaaggatgctcaataggccaagaaa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33306128 ttctatctgctcttgttgtgtgtctatcgatattcgatagtagatatttttgttccgaaggttgctcaataggccaagaaa 33306048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 15497300 - 15497244
Alignment:
Q  271 tgaatgctaccttaaaaaactacttctc---aatttatttcacaagtacttctcttc 324  Q
    |||||||||| ||||||||||||||||    ||||||||||||||||||||||||||    
T  15497300 tgaatgctactttaaaaaactacttctgtttaatttatttcacaagtacttctcttc 15497244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 325
Target Start/End: Complemental strand, 20997201 - 20997145
Alignment:
Q  271 tgaatgctaccttaaaaaactacttctc--aatttatttcacaagtacttctcttca 325  Q
    |||||||||| | |||||||||||||||  ||||||||||||||| |||||||||||    
T  20997201 tgaatgctacttcaaaaaactacttctcgtaatttatttcacaagcacttctcttca 20997145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 325
Target Start/End: Complemental strand, 43317713 - 43317656
Alignment:
Q  271 tgaatgctaccttaaaaaactacttctc---aatttatttcacaagtacttctcttca 325  Q
    |||||||||| |||||||||||||||||   ||||||||||||||| || ||||||||    
T  43317713 tgaatgctactttaaaaaactacttctccgtaatttatttcacaagcacctctcttca 43317656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 325
Target Start/End: Original strand, 40848998 - 40849055
Alignment:
Q  271 tgaatgctaccttaaaaaactacttctc---aatttatttcacaagtacttctcttca 325  Q
    |||||||||| |||||||||||||||||   ||||||||||||||| |||||||||||    
T  40848998 tgaatgctactttaaaaaactacttctctgtaatttatttcacaagcacttctcttca 40849055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 325
Target Start/End: Complemental strand, 46047007 - 46046950
Alignment:
Q  271 tgaatgctaccttaaaaaactacttctc---aatttatttcacaagtacttctcttca 325  Q
    |||||||||| | |||||||||||||||   |||||||||||||||||||||||||||    
T  46047007 tgaatgctacttcaaaaaactacttctctttaatttatttcacaagtacttctcttca 46046950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1793 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1793
Description:

Target: scaffold1793; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 325
Target Start/End: Complemental strand, 1173 - 1116
Alignment:
Q  271 tgaatgctaccttaaaaaactacttctca---atttatttcacaagtacttctcttca 325  Q
    |||||||||| | ||||||||||||||||   ||||||||||||||||| ||||||||    
T  1173 tgaatgctacttcaaaaaactacttctcagcaatttatttcacaagtacctctcttca 1116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 325
Target Start/End: Original strand, 37034032 - 37034089
Alignment:
Q  271 tgaatgctaccttaaaaaactacttctc---aatttatttcacaagtacttctcttca 325  Q
    |||||||||| | |||||||||||||||   |||||||||||||||||| ||||||||    
T  37034032 tgaatgctacttcaaaaaactacttctccgtaatttatttcacaagtacctctcttca 37034089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 325
Target Start/End: Original strand, 5482665 - 5482722
Alignment:
Q  271 tgaatgctaccttaaaaaactacttctc---aatttatttcacaagtacttctcttca 325  Q
    |||||||||| | |||||||||||||||   ||||||||||||||| |||||||||||    
T  5482665 tgaatgctacttcaaaaaactacttctctgtaatttatttcacaagcacttctcttca 5482722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 325
Target Start/End: Original strand, 23153868 - 23153925
Alignment:
Q  271 tgaatgctaccttaaaaaactacttctc---aatttatttcacaagtacttctcttca 325  Q
    |||||||||| | |||||||||||||||   ||||||||||||||| |||||||||||    
T  23153868 tgaatgctacttcaaaaaactacttctctgtaatttatttcacaagcacttctcttca 23153925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 325
Target Start/End: Original strand, 36759009 - 36759066
Alignment:
Q  271 tgaatgctaccttaaaaaactacttctc---aatttatttcacaagtacttctcttca 325  Q
    |||||||||| | |||||||||||||||   ||||||||||||||| |||||||||||    
T  36759009 tgaatgctacttcaaaaaactacttctctataatttatttcacaagcacttctcttca 36759066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 325
Target Start/End: Original strand, 36764777 - 36764834
Alignment:
Q  271 tgaatgctaccttaaaaaactacttctc---aatttatttcacaagtacttctcttca 325  Q
    |||||||||| | |||||||||||||||   ||||||||||||||| |||||||||||    
T  36764777 tgaatgctacttcaaaaaactacttctctataatttatttcacaagcacttctcttca 36764834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 325
Target Start/End: Complemental strand, 34207876 - 34207819
Alignment:
Q  271 tgaatgctaccttaaaaaactacttctc---aatttatttcacaagtacttctcttca 325  Q
    |||||||||| | |||||||||||||||   ||||||||||||||| |||||||||||    
T  34207876 tgaatgctacttcaaaaaactacttctctgtaatttatttcacaagcacttctcttca 34207819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 325
Target Start/End: Original strand, 10041999 - 10042056
Alignment:
Q  271 tgaatgctaccttaaaaaactacttctc---aatttatttcacaagtacttctcttca 325  Q
    |||||||||| | |||||||||||||||   |||||||||||||||||| ||||||||    
T  10041999 tgaatgctacttcaaaaaactacttctccgtaatttatttcacaagtacatctcttca 10042056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 325
Target Start/End: Complemental strand, 30511177 - 30511120
Alignment:
Q  271 tgaatgctaccttaaaaaactacttctc---aatttatttcacaagtacttctcttca 325  Q
    |||||||||| | |||||||||||||||   ||||||||||||||| |||||||||||    
T  30511177 tgaatgctacttcaaaaaactacttctctgtaatttatttcacaagcacttctcttca 30511120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 325
Target Start/End: Complemental strand, 30551517 - 30551460
Alignment:
Q  271 tgaatgctaccttaaaaaactacttctc---aatttatttcacaagtacttctcttca 325  Q
    |||||||||| | |||||||||||||||   ||||||||||||||| |||||||||||    
T  30551517 tgaatgctacttcaaaaaactacttctctgtaatttatttcacaagcacttctcttca 30551460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 325
Target Start/End: Complemental strand, 42112593 - 42112536
Alignment:
Q  271 tgaatgctaccttaaaaaactacttctc---aatttatttcacaagtacttctcttca 325  Q
    |||||||||| | |||||||||||||||   ||||||||||||||| |||||||||||    
T  42112593 tgaatgctacttcaaaaaactacttctctgtaatttatttcacaagcacttctcttca 42112536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 325
Target Start/End: Original strand, 16096092 - 16096147
Alignment:
Q  271 tgaatgctaccttaaaaaactacttct-caatttatttcacaagtacttctcttca 325  Q
    |||||||||| | |||||||||||||| |||||||||||||||| || ||||||||    
T  16096092 tgaatgctacttcaaaaaactacttctccaatttatttcacaagcacctctcttca 16096147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University