View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970_high_27 (Length: 336)
Name: NF4970_high_27
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_high_27 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 23 - 336
Target Start/End: Original strand, 4635593 - 4635903
Alignment:
| Q |
23 |
gacaaaatggtgcaacaaattaacataattgaatttagtaaaagtactgaattgaggtctaatcttgcagactgccatgaagttcttgcaaactcattat |
122 |
Q |
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| T |
4635593 |
gacaaaatggatcaacaaattaacataattgaatttagtaaaattactgaattgaggtctaatcttgcagactgccatgaagtttttgcaaactcattat |
4635692 |
T |
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| Q |
123 |
ttcttatgggagagattggaggtaacgacttcaattatcctttatttatacgaaggagcatagtagagattaaaacatacgtgccacatgtaatcaatgc |
222 |
Q |
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| T |
4635693 |
ttcttatgggagagatcggaggtaacgacttcaattatcctttatttatacgaaggagcatagtagagattaaaacatacgtgccacatgtaatcagtgc |
4635792 |
T |
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| Q |
223 |
aatcacttcagcaatcaatgtaagattatagtattatatgaagcaatatctgtctgcattactattattcgaatttcaactttccaagcatacttaattt |
322 |
Q |
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| T |
4635793 |
aatcacttcagcaatcaatgtaagatta---tattatatgaagcaatatctgtctgcattactattattcgaatttcaactttccaagcatacttaattt |
4635889 |
T |
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| Q |
323 |
tctattttatgtct |
336 |
Q |
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| T |
4635890 |
tctattttatgtct |
4635903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 88 - 251
Target Start/End: Original strand, 4658806 - 4658969
Alignment:
| Q |
88 |
tgcagactgccatgaagttcttgcaaactcattatttcttatgggagagattggaggtaacgacttcaattatcctttatttatacgaaggagcatagta |
187 |
Q |
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| T |
4658806 |
tgcagcctgccatgaagttcttggaaagtcattatttcttgtgggggagattggaggcaacgacttcaattatcctttacatatacgacagagcataaca |
4658905 |
T |
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| Q |
188 |
gagattaaaacatacgtgccacatgtaatcaatgcaatcacttcagcaatcaatgtaagattat |
251 |
Q |
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| T |
4658906 |
aagcttaaagaatatgtaccacatgtaatcaatgcaataactttagcaattaatgtaagattat |
4658969 |
T |
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