View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970_high_30 (Length: 324)
Name: NF4970_high_30
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 307
Target Start/End: Original strand, 44262568 - 44262874
Alignment:
| Q |
10 |
aagaatattggtttgttatgccattaattgatgggatgtatgtgtatctttaagtcccatttcagttatcggatggataggaatagaattactctaatct |
109 |
Q |
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| T |
44262568 |
aagaatattggtttgttatgccattaattgatgggatgtatgtgtatctttaagtcccatttcagttatcggatggataggaatagaattactctaatct |
44262667 |
T |
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| Q |
110 |
tcgcaagtagttatcgaatggataagtatagaatacatggcctgctttcattcctacaagcattaggacagtctggtttggcatgactactgcaattgct |
209 |
Q |
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| T |
44262668 |
tcgcaagtagttatcgaatggataagtatagaatacatggcctgctttcattcctacaagcattaggacagtctggtttggcatgactactgcaattgtt |
44262767 |
T |
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| Q |
210 |
gttgttctgtttgtgtagttaagcgattta---------cagcagagttttgggttcaatatagtaaggaaggagatctaaggagaggagctttggaggt |
300 |
Q |
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| T |
44262768 |
gttgttctgtttgtgtagttaagcgatttacagagcttgcagcagagttttgggttcaatatagtaaggaaggagatctaaggagaggagctttggaggt |
44262867 |
T |
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| Q |
301 |
ttaatag |
307 |
Q |
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| T |
44262868 |
taaatag |
44262874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 277
Target Start/End: Original strand, 56165239 - 56165377
Alignment:
| Q |
148 |
ggcctgctttcattcctacaagcattaggacagtctggtttggcatgactactgcaattgctgttgttctgtttgtgtagttaagcgatttacag----- |
242 |
Q |
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| T |
56165239 |
ggcctggtttcattcctaccagcattaggaccatttggattggtgtgactgctgcgattcctcttgttttgttcgtgcggttaagcgattgacagagctt |
56165338 |
T |
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| Q |
243 |
----cagagttttgggttcaatatagtaaggaaggagat |
277 |
Q |
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| T |
56165339 |
gcagcagaattttgggttcaatatagtaaggaaagagat |
56165377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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