View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970_high_4 (Length: 537)
Name: NF4970_high_4
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 245
Target Start/End: Original strand, 39040299 - 39040534
Alignment:
| Q |
10 |
attatactgcttgcttgctgagttatgattagtttatttatataaagggtgttgataataatgtattaatttttaattttcatttattacttcttgaagc |
109 |
Q |
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| T |
39040299 |
attacactgcttgcttgctgagttatgattagtttatttatataaagggtgttgataataatgtattaatttttaattttcatttattacttcttgaagc |
39040398 |
T |
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| Q |
110 |
aatgaggaaacattcttttgccattaggataaggttaactacgatttattttgtaaattttaccattctccctctaatttcacaaatttacatgatccaa |
209 |
Q |
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| T |
39040399 |
aatgaggaaacattcttttgccattaggataaggttaactatgatttattttgtaaattttaccattctccctctaatttcacaaatttacatgatccaa |
39040498 |
T |
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| Q |
210 |
gagaagtattgacaaccagagctactacaaagaagc |
245 |
Q |
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| T |
39040499 |
gagaagtactgacaaccagagctactacaaagaagc |
39040534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 49 - 518
Target Start/End: Original strand, 39027281 - 39027762
Alignment:
| Q |
49 |
atataaagggtgttgataataatgtattaattttt-aattttcatttattacttctt-gaagcaatgaggaaacattcttttgccattaggataaggtta |
146 |
Q |
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| T |
39027281 |
atataaagggtgctgataataatgtgtgtatttttgaattttcatttattacttctttggggtgatgaggaaacattctttttccattaggataaggata |
39027380 |
T |
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| Q |
147 |
actacgatttattttgtaaattttaccattctccctctaatttcacaaatttacatgatccaagagaagtattgacaaccagagctactacaaagaagca |
246 |
Q |
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| T |
39027381 |
actatgatttattttgtaaatcttacaattctccctccaattccacaatttcacaggaatcaagagaagtattgtcaaccagagttactacaaacaagca |
39027480 |
T |
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| Q |
247 |
gcctcatggagaagactcagatcgcctgtcaaaggattgatcaattagaagaattaaaaattaagctgctgaatgactgacttgtccaactgtcatctag |
346 |
Q |
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| T |
39027481 |
agctcatggagaagactcagatcgcgtgtcaaaggattgatcaattagagaacttagaaattcagctgctgtatgattggctggtcaagctgtcatcta- |
39027579 |
T |
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| Q |
347 |
taggttatgttctag------atatagaaatgcgtcgtcccatgcaatttgaagtctatctggttaaaactgtacattgcaacataaatgatggaatgaa |
440 |
Q |
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| T |
39027580 |
ttggccatgttttagcaataaaaatagaaatgcgacgtcccatgcgatttgaggcctatctggttaacactgtacattcccacataaatgatggaatgaa |
39027679 |
T |
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| Q |
441 |
tgtgat------ttttctacattggccagtcggaaggggtttggtttaatttagaatttgatggctgatatgcagctttgtagg |
518 |
Q |
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| T |
39027680 |
tgagattcgaggttttctacattggccggtcggcaggggttgagtttaatttag-atttgatggctgacatgcagctttgtagg |
39027762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 397 - 520
Target Start/End: Original strand, 39040590 - 39040713
Alignment:
| Q |
397 |
tatctggttaaaactgtacattgcaacataaatgatggaatgaatgtgatttttctacattggccagtcggaaggggtttggtttaatttagaatttgat |
496 |
Q |
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| T |
39040590 |
tatctggttaaaactgtacattgccacagaaatgatggaatgaatgtgatttttctacattggccagtcggaaggggtttggtttaatttagaatttgat |
39040689 |
T |
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| Q |
497 |
ggctgatatgcagctttgtaggtt |
520 |
Q |
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| T |
39040690 |
ggctgatatgcagctttgtaggtt |
39040713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 39040533 - 39040590
Alignment:
| Q |
314 |
gctgaatgactgacttgtccaactgtcatctagtaggttatgttctagatatagaaat |
371 |
Q |
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| T |
39040533 |
gctgaatgactgactggtccaactgtcatctagtaggttatgttctagatatagaaat |
39040590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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