View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4970_high_43 (Length: 251)
Name: NF4970_high_43
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_high_43 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 15802162 - 15801930
Alignment:
| Q |
1 |
taaactcagattctgacttaggcacaatatctaaccataatatcataggtagcaacaacagcgatgatcatgacaatgtttatgggttatacggttgtcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15802162 |
taaactcagattctgacttaggcacaatatctaaccacaacatcataggtagcaacaacagcgatgatcatgacaatgtttatgggttatacggttgtcg |
15802063 |
T |
|
| Q |
101 |
aggtgacatcacaggaagtttctgccgattctgtatcaacactgctgttagagaaatcgctcaacgttgtcctaacagtgtttcggctttgatatggtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15802062 |
aggtgacatcacaggaagtttctgccgattctgtatcaacactgctgttagagaaatcgctcaacgttgtcctaacagtgtttcggctttgatatggtat |
15801963 |
T |
|
| Q |
201 |
gatgtatgcgtcatgggttacactaaccagaat |
233 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
15801962 |
gatgtatgcgtcatgggttacacaaaccagaat |
15801930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 28 - 233
Target Start/End: Complemental strand, 15794336 - 15794131
Alignment:
| Q |
28 |
tatctaaccataatatcataggtagcaacaacagcgatgatcatgacaatgtttatgggttatacggttgtcgaggtgacatcacaggaagtttctgccg |
127 |
Q |
| |
|
|||||||||| || | ||||| ||||||||||| | |||||||||| | ||||||||||| || | |||||| ||||||||||||||||||||||| | |
|
|
| T |
15794336 |
tatctaaccacaacaccatagttagcaacaacaacaatgatcatgatacggtttatgggttctatgattgtcggggtgacatcacaggaagtttctgtca |
15794237 |
T |
|
| Q |
128 |
attctgtatcaacactgctgttagagaaatcgctcaacgttgtcctaacagtgtttcggctttgatatggtatgatgtatgcgtcatgggttacactaac |
227 |
Q |
| |
|
||| ||||||||||||| ||||||||| || || || |||||| |||||||| || ||| |||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
15794236 |
attttgtatcaacactgttgttagagatattgcaaaatattgtcccaacagtgtctcagctatgatatggtatgatttatgcatcatgggttacactaac |
15794137 |
T |
|
| Q |
228 |
cagaat |
233 |
Q |
| |
|
|||||| |
|
|
| T |
15794136 |
cagaat |
15794131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 233
Target Start/End: Complemental strand, 15807754 - 15807549
Alignment:
| Q |
28 |
tatctaaccataatatcataggtagcaacaacagcgatgatcatgacaatgtttatgggttatacggttgtcgaggtgacatcacaggaagtttctgccg |
127 |
Q |
| |
|
|||||||||| || | ||||||||||||||||||| || || |||| | ||||||||||| || | ||||| |||| | |||| |||||||||| | |
|
|
| T |
15807754 |
tatctaaccacaacaccataggtagcaacaacagcaattataatgatacggtttatgggttctatgattgtctaggtcctaacacaagaagtttctgtca |
15807655 |
T |
|
| Q |
128 |
attctgtatcaacactgctgttagagaaatcgctcaacgttgtcctaacagtgtttcggctttgatatggtatgatgtatgcgtcatgggttacactaac |
227 |
Q |
| |
|
||| || |||||||||||| |||||||||| || || |||||| |||||||| |||||| | |||||||||||||||||| |||||||||| |||||| |
|
|
| T |
15807654 |
attttgcatcaacactgcttttagagaaattgcaaaatattgtcccaacagtgtctcggctattatatggtatgatgtatgcatcatgggttatactaac |
15807555 |
T |
|
| Q |
228 |
cagaat |
233 |
Q |
| |
|
|||||| |
|
|
| T |
15807554 |
cagaat |
15807549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 220
Target Start/End: Complemental strand, 15815562 - 15815423
Alignment:
| Q |
81 |
tatgggttatacggttgtcgaggtgacatcacaggaagtttctgccgattctgtatcaacactgctgttagagaaatcgctcaacgttgtcctaacagtg |
180 |
Q |
| |
|
||||| || |||| |||||| |||||| | |||||||||||||| | ||| ||||||||| |||||||||||| ||||||||| ||||||| || | | |
|
|
| T |
15815562 |
tatggattctacgattgtcgtggtgacgtaacaggaagtttctgtcaattttgtatcaacgctgctgttagagcgatcgctcaatgttgtcccaatggcg |
15815463 |
T |
|
| Q |
181 |
tttcggctttgatatggtatgatgtatgcgtcatgggtta |
220 |
Q |
| |
|
| |||||| ||||||||||||| |||| ||||| ||||| |
|
|
| T |
15815462 |
tctcggctatgatatggtatgacatatgtgtcatcggtta |
15815423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 15700313 - 15700230
Alignment:
| Q |
95 |
ttgtcgaggtgacatcacaggaagtttctgccgattctgtatcaacactgctgttagagaaatcgctcaacgttgtcctaacag |
178 |
Q |
| |
|
|||||| | |||| |||||||||||||||| | ||| ||||||||||||||||| | |||||| ||||||||||||| |||||| |
|
|
| T |
15700313 |
ttgtcgggctgacgtcacaggaagtttctgtcaattttgtatcaacactgctgtcaaagaaattgctcaacgttgtcttaacag |
15700230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University