View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4970_high_49 (Length: 241)

Name: NF4970_high_49
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4970_high_49
NF4970_high_49
[»] chr1 (4 HSPs)
chr1 (1-168)||(1616441-1616608)
chr1 (19-133)||(26055649-26055767)
chr1 (19-133)||(50678703-50678818)
chr1 (20-133)||(25786721-25786831)
[»] chr2 (4 HSPs)
chr2 (19-133)||(6707676-6707795)
chr2 (19-133)||(12853368-12853485)
chr2 (19-133)||(23178148-23178265)
chr2 (19-133)||(23589405-23589522)
[»] chr6 (1 HSPs)
chr6 (65-133)||(34083799-34083867)
[»] scaffold0051 (1 HSPs)
scaffold0051 (19-133)||(39416-39539)
[»] scaffold1974 (1 HSPs)
scaffold1974 (19-133)||(153-271)
[»] scaffold1878 (1 HSPs)
scaffold1878 (19-133)||(1003-1121)
[»] scaffold0290 (1 HSPs)
scaffold0290 (19-133)||(9065-9183)
[»] chr8 (2 HSPs)
chr8 (65-133)||(45541978-45542046)
chr8 (20-118)||(38590566-38590662)
[»] chr5 (2 HSPs)
chr5 (21-131)||(21388026-21388137)
chr5 (19-123)||(18694088-18694196)
[»] chr3 (3 HSPs)
chr3 (20-133)||(42633142-42633252)
chr3 (19-133)||(11219903-11220020)
chr3 (20-106)||(32979563-32979653)
[»] chr4 (1 HSPs)
chr4 (21-106)||(44303164-44303253)
[»] scaffold0007 (1 HSPs)
scaffold0007 (19-133)||(145444-145555)


Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 1616608 - 1616441
Alignment:
Q  1 cttttgagggtgaatttatgtgttgttaatgtgttgaatttggagaaattcatgtttttaatttatgatgatgatgaaaagaatccaaaagggttgaatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1616608 cttttgagggtgaatttatgtgttgttaatgtgttgaatttggaaaaatttatgtttttaatttatgatgatgatgaaaagaattcaaaagggttgaatt 1616509  T
Q  101 tgattttttgatgtgttgttgctgctattgatggatttgatgtttatgaaatttatgatttgaggttt 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1616508 tgattttttgatgtgttgttgctgctattgatggatttgatgtttatgaaatttatgatttgaggttt 1616441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 26055649 - 26055767
Alignment:
Q  19 tgtgttgttaatgtgttgaatttggagaaattcatgtttttaattt----atgatgatgatgaaaagaatccaaaagggttgaatttgattttttgatgt 114  Q
    |||| |||| ||||| ||||||||||||||| ||| ||||| | ||    ||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  26055649 tgtgctgtttatgtgctgaatttggagaaatccattttttttaattcatgatgatgatgatgaaaagaatcaaaaagggttgaatttgatttcttgatgt 26055748  T
Q  115 gttgttgctgctattgatg 133  Q
    |||||||||||||||||||    
T  26055749 gttgttgctgctattgatg 26055767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 50678818 - 50678703
Alignment:
Q  19 tgtgttgttaatgtgttgaatttggagaaattcatgtttttaa-tttatgatgatgatgaaaagaatccaaaagggttgaatttgattttttgatgtgtt 117  Q
    ||||||||| ||| | |||||||| |||||| ||| ||||||| |||||||||||||||||||||||  ||||||| ||||  | |||| | ||||||||    
T  50678818 tgtgttgttgatgggctgaatttgaagaaatgcatttttttaaatttatgatgatgatgaaaagaattaaaaagggatgaaaataatttatcgatgtgtt 50678719  T
Q  118 gttgctgctattgatg 133  Q
    ||| |||||| |||||    
T  50678718 gtttctgctactgatg 50678703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 25786721 - 25786831
Alignment:
Q  20 gtgttgttaatgtgttgaatttggagaaattcat-gtttttaatttatgatgatgatgaaaagaatccaaaagggttgaatttgattttttgatgtgttg 118  Q
    |||||||| ||||| ||||||||||||||| ||| |||||||||| ||||   |||||||||||||  ||| ||||||||| |||||| | |||||||||    
T  25786721 gtgttgttgatgtgctgaatttggagaaatccattgtttttaattcatga---tgatgaaaagaattaaaatgggttgaatatgatttctcgatgtgttg 25786817  T
Q  119 ttgctgctattgatg 133  Q
     ||| ||||||||||    
T  25786818 atgc-gctattgatg 25786831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 6707676 - 6707795
Alignment:
Q  19 tgtgttgttaatgtgttgaatttggagaaattca--tgtttttaat---ttatgatgatgatgaaaagaatccaaaagggttgaatttgattttttgatg 113  Q
    |||| |||| ||||| ||||||||||||||||||  | ||||||||   | ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  6707676 tgtgctgtttatgtgctgaatttggagaaattcatttttttttaattcatgatgatgatgatgaaaagaataaaaaagggttgaatttgattttttgatg 6707775  T
Q  114 tgttgttgctgctattgatg 133  Q
    ||||||||||||||||||||    
T  6707776 tgttgttgctgctattgatg 6707795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 12853485 - 12853368
Alignment:
Q  19 tgtgttgttaatgtgttgaatttggagaaattcatgtttttaatttatgatgatgatga---aaagaatccaaaagggttgaatttgattttttgatgtg 115  Q
    |||| |||| ||||| ||||||||||||||| ||| ||| ||||| |||||||||||||   |||||||  |||| ||||||||||||||| ||||||||    
T  12853485 tgtgctgtttatgtgctgaatttggagaaatccatttttataattcatgatgatgatgatgaaaagaattaaaaaaggttgaatttgatttcttgatgtg 12853386  T
Q  116 ttgttgctgctattgatg 133  Q
    ||||||||| ||||||||    
T  12853385 ttgttgctgatattgatg 12853368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 23178265 - 23178148
Alignment:
Q  19 tgtgttgttaatgtgttgaatttggagaaattcatgtttttaattt----atgatgatgatgaaaagaatccaaaagggttgaatttgattttttgatgt 114  Q
    ||||||||| ||||| |||||||||||||||  || ||||| | ||    ||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  23178265 tgtgttgttgatgtgctgaatttggagaaatctattttttttaattcatgatgatgatgatgaaaagaatcaaaaagggttgaatttgatttcttgatgt 23178166  T
Q  115 gttgttgctgctattgatg 133  Q
    |||||| || |||||||||    
T  23178165 gttgttact-ctattgatg 23178148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 23589522 - 23589405
Alignment:
Q  19 tgtgttgttaatgtgttgaatttggagaaattcatgtttttaattt----atgatgatgatgaaaagaatccaaaagggttgaatttgattttttgatgt 114  Q
    ||||||||| ||||| |||||||||||||||  || ||||| | ||    ||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  23589522 tgtgttgttgatgtgctgaatttggagaaatctattttttttaattcatgatgatgatgatgaaaagaatcaaaaagggttgaatttgatttcttgatgt 23589423  T
Q  115 gttgttgctgctattgatg 133  Q
    |||||| || |||||||||    
T  23589422 gttgttact-ctattgatg 23589405  T

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Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 34083799 - 34083867
Alignment:
Q  65 atgatgatgatgaaaagaatccaaaagggttgaatttgattttttgatgtgttgttgctgctattgatg 133  Q
    ||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  34083799 atgatgatgatgaaaagaataaaaaagggttgaatttgatttcttgatgtgttgttgctgctattgatg 34083867  T

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Target: scaffold0051 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 39416 - 39539
Alignment:
Q  19 tgtgttgttaatgtgttgaatttggagaaattcatgttttt---aatttatga------tgatgatgaaaagaatccaaaagggttgaatttgatttttt 109  Q
    ||||||||| ||||||||||||||||||||| ||| |||||   |||| ||||      ||||||||||||||||  ||||||||||| |||||||| ||    
T  39416 tgtgttgttgatgtgttgaatttggagaaatccattttttttttaattcatgatgatgatgatgatgaaaagaataaaaaagggttgactttgatttctt 39515  T
Q  110 gatgtgttgttgctgctattgatg 133  Q
    ||||||||||||||||||||||||    
T  39516 gatgtgttgttgctgctattgatg 39539  T

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Target: scaffold1974 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 153 - 271
Alignment:
Q  19 tgtgttgttaatgtgttgaatttggagaaattca--tgtttttaat---ttatgatgatgatgaaaagaatccaaaagggttgaatttgattttttgatg 113  Q
    ||||||||| ||||| |||||||||||||||  |  | ||||||||   | ||||||||||||||||||||  |||||||||||||||||||| ||||||    
T  153 tgtgttgttgatgtgctgaatttggagaaatctatttttttttaattcatgatgatgatgatgaaaagaattaaaaagggttgaatttgatttcttgatg 252  T
Q  114 tgttgttgctgctattgatg 133  Q
    |||||||||| |||||||||    
T  253 tgttgttgct-ctattgatg 271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1878 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 1121 - 1003
Alignment:
Q  19 tgtgttgttaatgtgttgaatttggagaaattca--tgtttttaat---ttatgatgatgatgaaaagaatccaaaagggttgaatttgattttttgatg 113  Q
    ||||||||| ||||| |||||||||||||||  |  | ||||||||   | ||||||||||||||||||||  |||||||||||||||||||| ||||||    
T  1121 tgtgttgttgatgtgctgaatttggagaaatctatttttttttaattcatgatgatgatgatgaaaagaattaaaaagggttgaatttgatttcttgatg 1022  T
Q  114 tgttgttgctgctattgatg 133  Q
    |||||||||| |||||||||    
T  1021 tgttgttgct-ctattgatg 1003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 9065 - 9183
Alignment:
Q  19 tgtgttgttaatgtgttgaatttggagaaattca--tgtttttaat---ttatgatgatgatgaaaagaatccaaaagggttgaatttgattttttgatg 113  Q
    ||||||||| ||||| |||||||||||||||  |  | ||||||||   | ||||||||||||||||||||  |||||||||||||||||||| ||||||    
T  9065 tgtgttgttgatgtgctgaatttggagaaatctatttttttttaattcatgatgatgatgatgaaaagaattaaaaagggttgaatttgatttcttgatg 9164  T
Q  114 tgttgttgctgctattgatg 133  Q
    |||||||||| |||||||||    
T  9165 tgttgttgct-ctattgatg 9183  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 45542046 - 45541978
Alignment:
Q  65 atgatgatgatgaaaagaatccaaaagggttgaatttgattttttgatgtgttgttgctgctattgatg 133  Q
    ||||||||||||||||||||  |||| |||||| |||||||| ||||||||||||||||||||||||||    
T  45542046 atgatgatgatgaaaagaataaaaaatggttgattttgatttcttgatgtgttgttgctgctattgatg 45541978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 38590566 - 38590662
Alignment:
Q  20 gtgttgttaatgtgttgaatttggagaaattcat-gtttttaatttatgatgatgatgaaaagaatccaaaagggttgaatttgattttttgatgtgttg 118  Q
    |||||||| ||||| ||||||||||||||| ||| |||||||||| ||||   |||||||||||||  ||| ||||||||| |||||| | |||||||||    
T  38590566 gtgttgttgatgtgctgaatttggagaaatccattgtttttaattcatga---tgatgaaaagaattaaaatgggttgaatatgatttctcgatgtgttg 38590662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 21388137 - 21388026
Alignment:
Q  21 tgttgttaatgtgttgaatttggagaaattcatgttttt-aatttatgatgatgatgaaaagaatccaaaagggttgaatttgattttttgatgtgttgt 119  Q
    ||||||| ||| | |||||||| |||||| ||| ||||| |||| ||||||||||||||||||||  ||||||| ||||  | |||| ||||||||||||    
T  21388137 tgttgttgatgggctgaatttgaagaaatgcattttttttaattcatgatgatgatgaaaagaattaaaaagggatgaaaataatttattgatgtgttgt 21388038  T
Q  120 tgctgctattga 131  Q
    ||||||||||||    
T  21388037 tgctgctattga 21388026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 18694196 - 18694088
Alignment:
Q  19 tgtgttgttaatgtgttgaatttggagaaattcatgttttt-aatttatgatgatg---atgaaaagaatccaaaagggttgaatttgattttttgatgt 114  Q
    ||||||||| ||| | |||||||| |||||| ||| ||||| |||| |||||||||   |||||||||||  ||||||| ||||  | |||| |||||||    
T  18694196 tgtgttgttgatgggctgaatttgaagaaatacattttttttaattcatgatgatgatgatgaaaagaattaaaaagggatgaaaataatttattgatgt 18694097  T
Q  115 gttgttgct 123  Q
    |||||||||    
T  18694096 gttgttgct 18694088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 42633252 - 42633142
Alignment:
Q  20 gtgttgttaatgtgttgaatttggagaaattcat-gtttttaatttatgatgatgatgaaaagaatccaaaagggttgaatttgattttttgatgtgttg 118  Q
    |||||||| ||||| ||||||||||||||| ||| |||||||||| ||||||||||   |||||||  ||| ||||||||| |||||| |||||||||||    
T  42633252 gtgttgttgatgtgctgaatttggagaaatccattgtttttaattcatgatgatga---aaagaattaaaatgggttgaatatgatttcttgatgtgttg 42633156  T
Q  119 ttgctgctattgatg 133  Q
     ||| ||||||||||    
T  42633155 atgc-gctattgatg 42633142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 11220020 - 11219903
Alignment:
Q  19 tgtgttgttaatgtgttgaatttggagaaattca--tgtttttaat---ttatgatgatgatgaaaagaatccaaaagggttgaatttgattttttgatg 113  Q
    |||| |||| ||||| ||||||||||||||| ||  | ||||||||   | ||||||||||||||||||||| |||| ||||||||||||||| ||||      
T  11220020 tgtgctgtttatgtgctgaatttggagaaatccatttttttttaattcatgatgatgatgatgaaaagaatcaaaaatggttgaatttgatttcttga-- 11219923  T
Q  114 tgttgttgctgctattgatg 133  Q
    ||||||||||||||| ||||    
T  11219922 tgttgttgctgctatagatg 11219903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 32979653 - 32979563
Alignment:
Q  20 gtgttgttaatgtgttgaatttggagaaattcat-gtttttaatttatga---tgatgatgaaaagaatccaaaagggttgaatttgattt 106  Q
    |||||||| ||||| ||||||||||||||| ||| |||||||||| ||||   ||||||||||||||||  ||| ||||||||||||||||    
T  32979653 gtgttgttgatgtgctgaatttggagaaatccattgtttttaattcatgaagatgatgatgaaaagaattaaaatgggttgaatttgattt 32979563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 44303253 - 44303164
Alignment:
Q  21 tgttgttaatgtgttgaatttggagaaattcat-gtttttaatttatga---tgatgatgaaaagaatccaaaagggttgaatttgattt 106  Q
    ||||||| ||||| ||||||||||||||| ||| |||||||||| ||||   ||||||||||||||||  ||| ||||||||||||||||    
T  44303253 tgttgttgatgtgatgaatttggagaaatccattgtttttaattcatgaagatgatgatgaaaagaattaaaatgggttgaatttgattt 44303164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 145444 - 145555
Alignment:
Q  19 tgtgttgttaatgtgttgaatttggagaaattcatg-tttttaatttatgatgatgatgaaaagaatccaaaagggttgaatttgattttttgatgtgtt 117  Q
    ||||||||| ||||| ||||||||||||||| |||  ||||||||| ||||   |||||||||||||  ||| ||||||||| |||||| | ||||||||    
T  145444 tgtgttgttgatgtgctgaatttggagaaatccattatttttaattcatga---tgatgaaaagaattaaaatgggttgaatatgatttctcgatgtgtt 145540  T
Q  118 gttgctgctattgatg 133  Q
    | ||| ||||||||||    
T  145541 gatgc-gctattgatg 145555  T

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