View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4970_high_52 (Length: 229)
Name: NF4970_high_52
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4970_high_52 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 4636107 - 4635884
Alignment:
| Q |
6 |
aattcttcttagcctatgtaactcatattggagctcctgattataaaattcagcaaattcgtttaaccacttcaagcaaccagctgagtcgtattggctc |
105 |
Q |
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| T |
4636107 |
aattcttcttagcctatgtaactcatattggagctcctgattataaaattcagcaaattcgtttaaccacttcaagcaaccagctgagtcatattggctc |
4636008 |
T |
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| Q |
106 |
ttatctgtagtttcatattttgttaaataaattacactgcatcccaatgggaaattcccagggatcatgagcgtgcgtgcacctagatcaatcaactcct |
205 |
Q |
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| T |
4636007 |
ttatctgtagtttcatattttgttaagtaaattacattgcatcccaatgggaaattcccagggatcatgagcgtgcgtgcacctagatcaatcaactcct |
4635908 |
T |
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| Q |
206 |
gtgaagacataaaatagaaaatta |
229 |
Q |
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| T |
4635907 |
gtgaagacataaaatagaaaatta |
4635884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 4659254 - 4659044
Alignment:
| Q |
16 |
agcctatgtaactcatattggagctcctgattataaaattcagcaaattcgtttaaccacttcaagcaaccagctgagtcgtattggctcttatctgtag |
115 |
Q |
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| T |
4659254 |
agcctatgtatctcatgttggagtttctggttataaaattcagaaaattcatttaaccacttcaagcaaccaaatgagtcatattggttcttatccgtgg |
4659155 |
T |
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| Q |
116 |
tttcatattttgttaaataaattacactgcatcccaatgggaaattcccagggatcatgagcgtgcgtgcacctagatcaatcaactcctgtgaagacat |
215 |
Q |
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| T |
4659154 |
tttcatacgttgttaaatggactgcactacatcccaatgggaaatttccagggaccataagcgtgcgtgcccctagatcaatcaactcctgcgaagacat |
4659055 |
T |
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| Q |
216 |
aaaatagaaaa |
226 |
Q |
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|||||| |||| |
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| T |
4659054 |
aaaatacaaaa |
4659044 |
T |
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