View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4970_high_53 (Length: 228)

Name: NF4970_high_53
Description: NF4970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4970_high_53
NF4970_high_53
[»] scaffold0090 (1 HSPs)
scaffold0090 (18-211)||(8335-8528)
[»] chr3 (12 HSPs)
chr3 (66-211)||(13855017-13855162)
chr3 (132-193)||(20342485-20342546)
chr3 (111-193)||(1107508-1107590)
chr3 (132-193)||(5483495-5483556)
chr3 (128-197)||(5488941-5489010)
chr3 (128-197)||(5501788-5501857)
chr3 (128-193)||(5524656-5524721)
chr3 (132-193)||(5829386-5829447)
chr3 (148-211)||(1050411-1050474)
chr3 (132-193)||(5445166-5445227)
chr3 (132-193)||(5850131-5850192)
chr3 (111-211)||(1077277-1077377)
[»] chr8 (1 HSPs)
chr8 (69-211)||(23555533-23555675)
[»] chr5 (3 HSPs)
chr5 (131-193)||(22689410-22689472)
chr5 (150-211)||(28419897-28419958)
chr5 (150-211)||(28433130-28433191)
[»] chr4 (1 HSPs)
chr4 (124-198)||(31697078-31697152)
[»] chr2 (2 HSPs)
chr2 (147-190)||(2712642-2712685)
chr2 (128-173)||(34218961-34219006)


Alignment Details
Target: scaffold0090 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 8528 - 8335
Alignment:
Q  18 ataagtttaaaatttatgtaaagaaattactaataaacttattgaacacactttacagatccatttcaaagtaaattgttggactggtctgcacgcttta 117  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8528 ataagtttaaaatttatgtaaagaaattactaataaacatattgaacacactttacagatccatttcaaagtaaattgttggattggtctgcacgcttta 8429  T
Q  118 acattctatttggaattgctcgggggcttctttatcttcatcaagattcaagattacgaatcatacatagagatctgaaagtgagtaatatttt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8428 acattctatttggaattgctcgggggcttctttatcttcatcaagattcaagattacgaatcatacacagagatctgaaagtgagtaatatttt 8335  T

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Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 66 - 211
Target Start/End: Original strand, 13855017 - 13855162
Alignment:
Q  66 cactttacagatccatttcaaagtaaattgttggactggtctgcacgctttaacattctatttggaattgctcgggggcttctttatcttcatcaagatt 165  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||    
T  13855017 cactttacagatccatttcaaagtaaattgttggattggtctgcacgcttcaacattatatttggaattgctcgagggcttctttatcttcatcaagatt 13855116  T
Q  166 caagattacgaatcatacatagagatctgaaagtgagtaatatttt 211  Q
    |||||||||| |||||||| |||||||| |||||||||||||||||    
T  13855117 caagattacggatcatacacagagatcttaaagtgagtaatatttt 13855162  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 20342546 - 20342485
Alignment:
Q  132 attgctcgggggcttctttatcttcatcaagattcaagattacgaatcatacatagagatct 193  Q
    ||||||||||||||||| ||||| ||||||||||| | | ||||||||||||||||||||||    
T  20342546 attgctcgggggcttctgtatctccatcaagattctacactacgaatcatacatagagatct 20342485  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 1107508 - 1107590
Alignment:
Q  111 cgctttaacattctatttggaattgctcgggggcttctttatcttcatcaagattcaagattacgaatcatacatagagatct 193  Q
    |||||||||||  ||| |||||| ||||| || ||| ||||||||||||||||||| |||||  | |||||||||||||||||    
T  1107508 cgctttaacatcatatgtggaatcgctcgtggacttatttatcttcatcaagattctagattgaggatcatacatagagatct 1107590  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 5483556 - 5483495
Alignment:
Q  132 attgctcgggggcttctttatcttcatcaagattcaagattacgaatcatacatagagatct 193  Q
    |||||||||||||| || ||||| ||||| ||||| | |||| |||||||||||||||||||    
T  5483556 attgctcgggggctgctgtatctccatcaggattctacattaagaatcatacatagagatct 5483495  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 5489010 - 5488941
Alignment:
Q  128 tggaattgctcgggggcttctttatcttcatcaagattcaagattacgaatcatacatagagatctgaaa 197  Q
    |||||||||||| |||||  | ||||||||||||||||| | | || ||||||||||||||||| |||||    
T  5489010 tggaattgctcgagggctgttgtatcttcatcaagattctacactaagaatcatacatagagatatgaaa 5488941  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 5501857 - 5501788
Alignment:
Q  128 tggaattgctcgggggcttctttatcttcatcaagattcaagattacgaatcatacatagagatctgaaa 197  Q
    |||||||||||| |||||  | ||||||||||||||||| | | || ||||||||||||||||| |||||    
T  5501857 tggaattgctcgagggctgttgtatcttcatcaagattctacactaagaatcatacatagagatatgaaa 5501788  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 5524721 - 5524656
Alignment:
Q  128 tggaattgctcgggggcttctttatcttcatcaagattcaagattacgaatcatacatagagatct 193  Q
    |||||||||||| ||||| || ||||||||||||||||| | |  | |||||||||||||||||||    
T  5524721 tggaattgctcgagggctgctatatcttcatcaagattctacacaaagaatcatacatagagatct 5524656  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 5829386 - 5829447
Alignment:
Q  132 attgctcgggggcttctttatcttcatcaagattcaagattacgaatcatacatagagatct 193  Q
    |||||||| ||||| |||||||| ||||||||||||| |||  | |||||||||||||||||    
T  5829386 attgctcgtgggctgctttatctccatcaagattcaacattgaggatcatacatagagatct 5829447  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 1050411 - 1050474
Alignment:
Q  148 tttatcttcatcaagattcaagattacgaatcatacatagagatctgaaagtgagtaatatttt 211  Q
    ||||||||||||||||||| |||||| | ||||||||| ||||||| |||   |||||||||||    
T  1050411 tttatcttcatcaagattctagattaaggatcatacatcgagatctaaaaccaagtaatatttt 1050474  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 5445227 - 5445166
Alignment:
Q  132 attgctcgggggcttctttatcttcatcaagattcaagattacgaatcatacatagagatct 193  Q
    |||||||||||||| || ||||| ||||| ||||| | |||| ||||||| |||||||||||    
T  5445227 attgctcgggggctgctgtatctccatcaggattctacattaagaatcattcatagagatct 5445166  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 5850131 - 5850192
Alignment:
Q  132 attgctcgggggcttctttatcttcatcaagattcaagattacgaatcatacatagagatct 193  Q
    |||||||| ||||| || ||||| ||||| ||||| | |||| |||||||||||||||||||    
T  5850131 attgctcgagggctgctgtatctccatcaggattctacattaagaatcatacatagagatct 5850192  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 1077277 - 1077377
Alignment:
Q  111 cgctttaacattctatttggaattgctcgggggcttctttatcttcatcaagattcaagattacgaatcatacatagagatctgaaagtgagtaatattt 210  Q
    ||||| |||||| | | ||||||||| || || ||  ||||||||||||||||||| |||||  | ||||||||| ||||||| |||   ||||||||||    
T  1077277 cgcttcaacattgtttgtggaattgcccgtggactgatttatcttcatcaagattctagattgaggatcatacatcgagatctaaaaccaagtaatattt 1077376  T
Q  211 t 211  Q
    |    
T  1077377 t 1077377  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 211
Target Start/End: Original strand, 23555533 - 23555675
Alignment:
Q  69 tttacagatccatttcaaagtaaattgttggactggtctgcacgctttaacattctatttggaattgctcgggggcttctttatcttcatcaagattcaa 168  Q
    |||||||||||| ||||||||||| |||| || |||||  | || ||||||||  | | |||||||||||| || ||||||||| | |||||||||||||    
T  23555533 tttacagatccaattcaaagtaaactgttagattggtcgacgcgttttaacatcttgtatggaattgctcgaggtcttctttatttacatcaagattcaa 23555632  T
Q  169 gattacgaatcatacatagagatctgaaagtgagtaatatttt 211  Q
    ||||  | ||||||||||||||| |||| |  |||||||||||    
T  23555633 gattgaggatcatacatagagatttgaaggcaagtaatatttt 23555675  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 22689472 - 22689410
Alignment:
Q  131 aattgctcgggggcttctttatcttcatcaagattcaagattacgaatcatacatagagatct 193  Q
    ||||||||| || ||||||||||||||||||||||| | |||| ||||||||||||| |||||    
T  22689472 aattgctcgaggacttctttatcttcatcaagattctatattaagaatcatacatagggatct 22689410  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 28419897 - 28419958
Alignment:
Q  150 tatcttcatcaagattcaagattacgaatcatacatagagatctgaaagtgagtaatatttt 211  Q
    ||||||||||||||||| |||||| | ||||||||||| ||| |||| | ||||||||||||    
T  28419897 tatcttcatcaagattctagattaaggatcatacatagggatttgaaggcgagtaatatttt 28419958  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 28433130 - 28433191
Alignment:
Q  150 tatcttcatcaagattcaagattacgaatcatacatagagatctgaaagtgagtaatatttt 211  Q
    ||||||||||||||||| |||||| | |||||||| |||||||| || |  |||||||||||    
T  28433130 tatcttcatcaagattctagattaaggatcatacacagagatctaaaggcaagtaatatttt 28433191  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 31697078 - 31697152
Alignment:
Q  124 tatttggaattgctcgggggcttctttatcttcatcaagattcaagattacgaatcatacatagagatctgaaag 198  Q
    |||||||||||||| |||| ||| | |||||||||||||||||  ||||| |||| || ||||||||||| ||||    
T  31697078 tatttggaattgctaggggacttgtgtatcttcatcaagattctcgattaagaattattcatagagatctcaaag 31697152  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 2712685 - 2712642
Alignment:
Q  147 ctttatcttcatcaagattcaagattacgaatcatacatagaga 190  Q
    ||||||||||||| ||||||||||||| |||| |||||||||||    
T  2712685 ctttatcttcatcgagattcaagattaagaataatacatagaga 2712642  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 34218961 - 34219006
Alignment:
Q  128 tggaattgctcgggggcttctttatcttcatcaagattcaagatta 173  Q
    |||||||||||| || ||||||||||||||| ||||||| ||||||    
T  34218961 tggaattgctcgaggccttctttatcttcatgaagattctagatta 34219006  T

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